• Journal of Ecology and Environment
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• 제42권4호
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• pp.163-173
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• 2018

Background: Deforestation and degradation are currently affecting the ecosystem services of forests. Among the ecosystem services affected by deforestation and degradation are the amount of soil organic carbon (SOC) and total nitrogen (TN) stored in forest soils which have greater impacts in global climate change. This study aimed at examining the amount of SOC and TN in the forest fragments which were separated from the continuous tracts of forests of Jibat and Chillimo through fragmentation processes over four decades. Methods: We have sampled soils from 15 forest fragments of Chillimo and Jibat in the central highlands of Ethiopia. The soil samples obtained in two separate soil depths (0-30 and 30-60 cm) were bulked, dried, and sieved for analysis. Results: Our results have shown that the two sites (Jibat and Chillimo forest fragments) differed in their SOC and TN contents. While the values for Jibat were found to be 29.89 Mg/ha of SOC and 2.84 Mg/ha for TN, it was 14. 06 Mg/ha of SOC and 1.40 Mg/ha for TN for Chillimo. When all forest fragment soil samples were bulked together, Jibat site had twice the value of SOC and TN than Chillimo. When disaggregated on the basis of each fragments, there existed differences in SOC (1.86 Mg/ha and 42.15 Mg/ha) and TN (0.24 Mg/ha and 4.23 Mg/ha) values. Among the forest fragments, fragment four ($F_4$) had the highest Relative Soil Improvement Index (RSII) value of 3826.82% and fragment fifteen ($F_{15}$) had the lowest RSII value (726.87%) which indicated that the former had a better quality of soil properties than the latter. Conclusion: SOC and TN differed across sampled fragments and sites. Variations in soil properties are the reflections of inherent soil parent material, aboveground vegetation, human interferences, and other physical factors. Such differences could be very important for identifying intervention measures for restoration and enhancing ecosystem services of those fragments.

• Journal of Forest and Environmental Science
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• 제34권2호
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• pp.101-107
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• 2018

We identified the main impacts, drivers, and restoration projects for Atlantic Forest in Northwest of the Rio Grande do Sul State, Brazil. The objective was to analyze the quantity, distribution, and causes of the environmental crimes in 2000-2014. To verify differences between degraded and restored areas, we performed a t-test; ANOVA for the municipalities with more quantity of crimes, simple linear regression analysis for the relationship between sizes of degraded areas and quantity of seedlings planted, and Principal Component Analysis (PCA) for environmental damages categories and population of the municipalities. The main environmental damages found were deforestation outside permanent preservation area (20%) and those related to Permanent Preservation Area (37%). Environmental crimes in these areas fall into two categories: native and exotic vegetation removal (17%), and impediment to natural regeneration (20%). The average size of the degraded areas was $5,359{\pm}526m^2$, while for restored areas was $3,337{\pm}255m^2$. The sizes of the degraded fragments were similar among the five municipalities with the higher number of environmental crimes (ANOVA: p>0.05, F=1.24; df=241). The number of seedlings planted was positively related to the sizes of the degraded fragments (p<0.001, $R^2=0.53$). Segregation between the less and the most populous municipalities was found with the PCA analysis along PC1 (51.7%), while PC2 represented 19.2% of the total variation. The most populous municipalities showed the highest number of environmental crimes, and the majority of degraded areas were recovered by planting native seedlings. Atlantic Forest fragments need to be recognized and preserved as an ecosystem with a unique ecological function by the population and public administration.

• Journal of Forest and Environmental Science
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• 제31권1호
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• pp.68-71
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• 2015

Korean L. leiolepis of the genus Leontopodium could be discriminate from the foreign L. alpinum using random amplified polymorphic DNA (RAPD). Among the 12 URP markers used for the detection, the URP-5 marker and the URP-7 marker detected polymorphic DNA bands, ranging from 400-1000 bp in the size of amplified DNA fragments.

• Molecules and Cells
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• 제20권2호
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• pp.201-209
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• 2005

We have constructed an AFLP-based linkage map of Japanese red pine (Pinus densiflora Siebold et Zucc.) using haploid DNA samples of 96 megagametophytes from a single maternal tree, selection clone Kyungbuk 4. Twenty-eight primer pairs generated a total of 5,780 AFLP fragments. Five hundreds and thirteen fragments were verified as genetic markers with two alleles by their Mendelian segregation. At the linkage criteria LOD 4.0 and maximum recombination fraction 0.25(${\theta}$), a total of 152 markers constituted 25 framework maps for 19 major linkage groups. The maps spanned a total length of 2,341 cM with an average framework marker spacing of 18.4 cM. The estimated genome size was 2,662 cM. With an assumption of equal marker density, 82.2% of the estimated genome would be within 10 cM of one of the 230 linked markers, and 68.1% would be within 10 cM of one of the 152 framework markers. We evaluated map completeness in terms of LOD value, marker density, genome length, and map coverage. The resulting map will provide crucial information for future genomic studies of the Japanese red pine, in particular for QTL mapping of economically important breeding target traits.

• 한국환경복원기술학회지
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• 제13권5호
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• pp.146-153
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• 2010

Urban development typically results in many species being confined to small, isolated and degraded habitat fragments. Fragment size and isolation underpin many studies of modified landscape to prevent biodiversity loss. However, habitat characteristics such as vegetation structure and edge effects are less frequently incorporated in planning. The relative influence of biogeographic (e.g. size, isolation) and vegetation parameters on assemblages is poorly understood, but critical for conservation management. In this study, the relative importance of biogeographic and vegetation parameters in explaining the diversity of forest-interior dwelling birds in forest fragments in Chungcheong Province Area. Fragment size and vegetation characteristics were consistently important predictors of bird diversity. Forestinterior bird richness was influenced by fragment size (0.437), wood age (0.332), wood diameter (0.068), and patch shape (-0.079). To preserve bird diversity of Chungcheong Province Area, it is important to consider differing responses of bird diversity to landscape change, move beyond a focus primarily on spatial attributes (size, isolation) to recognize that landscape change also has profound effects on habitat composition and quality. The result is very useful for long-term aspect of biodiversity conservation plan in regional scale.

• 한국산림과학회지
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• 제109권4호
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• pp.421-428
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• 2020

Tamarind (Tamarindus indica L.) is one of the multipurpose tree species distributed in the tropical and sub-tropical climates. It is an important fruit yielding tree that supports the livelihood and has high social and cultural values for rural communities. The vegetative, reproductive, qualitative, and quantitative traits of tamarind vary widely. Characterization of phenotypic and genetic structure is essential for the selection of suitable accessions for sustainable cultivation and conservation. This study aimedto examine the genetic relationship among the collected accessions of sweet, red, and sour tamarind by using Random Amplified Polymorphic DNA (RAPD) primers. Nine accessions were collected from germplasm gene banks and subjected to marker analysis. Fifteen highly polymorphic primers generated a total of 169 fragments, out of which 138 bands were polymorphic. The polymorphic information content of RAPD markers varied from 0.10 to 0.44, and the Jaccard's similarity coefficient values ranged from 0.37 to 0.70. The genetic clustering showed a sizable genetic variation in the tamarind accessions at the molecular level. The molecular and biochemical variations in the selected accessions are very important for developing varieties with high sugar, anthocyanin, and acidity traits in the ongoing tamarind improvement program.

• 한국조경학회지
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• 제31권2호
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• pp.48-57
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• 2003

The objective of this study is to review and verify whether the functions and effect of roadside trees generally hewn in theory are actually realized in urban roads and how well they are performed if the function and effect are realized. The study was conducted with a focus on 3 functions and effects including roadside tree's urban landscape improvement function (green area visibility ratio), effect of introducing green area within a city, and urban green network building function. The major study results are as follows: First, the average green area visibility ratio of 41 study areas is currently about 25.90%. The green area visibility ratio of commercial area within downtown was lowest among 5 road types. It showed that it is possible to raise the average green area visibility ratio up to 32.49% through roadside tree management and additional plantation. Second, in a section between Paldal Mountain and Suwon City Hall where there is no forest fragments and parks at all, a green area of 4,826 roadside trees represented 2.4% of total area and served as the only linear green area. Third, an analysis of 15 cities in Kyonggi province showed that urban forests are concentrated in outskirts. The suey showed that because forest fragments and parks exist in a form of points in urban areas, roadside trees are the only green areas that link each other and build a network.

• 한국환경복원기술학회지
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• 제8권1호
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• pp.63-72
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• 2005

Chirisan National Park, the first and largest one out of 20 national parks in Korea, is divided into five zones. They are composed of nature preservation zone, natural environment zone, natural residential zone, concentrated residential zone, and collective facility zone. However, the park is not a continuous habitat: roads, trails, local residences, and various facilities created the habitat mosaics severely fragmented. We investigated the fragmentation pattern of the park due to roads and mountain trails using GIS. Based on perimeter length, area, and the ratio of perimeter to area of each patch, we obtained landscape analysis indices which reflect the regularity of the patch shape. The 1 m-wide hiking trails divided the park into 491 fragments. The legal trails with 1.5 m - 3 m width which have been heavily used by hikers generate 58 fragments. Even the nature preservation zone, corresponding to a core zone comprising 31.8% of the park area, was divided into 37 fragments because of the roads and mountain trails. With the different widths of buffer applied, the core sizes of the fragments were reduced. When the 60 m buffer was applied, the patch interior areas ranged from 0.0001 to 47.77 $km^2$ with a mean of 7.08 $km^2$. The landscape shape indices were far greater than 1 for most of the cases with a maximum value of 25. These results clearly indicate that Chirisan National Park is not a continuous habitat, but mosaics of small, irregularly shaped habitat fragments. It is necessary to take the size and shape of the fragmented habitats into consideration when nature conservation is planned, especially for large wildlife such as brown bears.

• 한국균학회지
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• 제49권4호
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• pp.455-467
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• 2021

Macrofungi are valuable resources as novel drug candidates, new biomaterials, and edible materials. Recently, genetic approaches pertaining to macrofungi have been continuously growing for their identification, molecular breeding, and genetic engineering. However, purification and amplification of fungal DNA is challenging because of the rigid cell wall and presence of PCR inhibitory metabolites. Here, we established a direct PCR method to provide a rapid and efficient method for PCR-grade macrofungal DNA preparation applicable to both conventional PCR and real-time PCR. We first optimized the procedure of lysis and PCR using the mycelia of Lentinula edodes, one of the most widely consumed macrofungal species. Lysates prepared by neutralizing with (NH₄)₂SO₄ after heating the mycelia in a mixture of TE buffer and KOH at 65℃ for 10 min showed successful amplification in both conventional and real-time PCR. Moreover, the addition of bovine serum albumin to the PCR mixture enhanced the amplification in conventional PCR. Using this method, we successfully amplified not only internal transcribed spacer fragments but also low-copy genes ranging in length from 500 to 3,000 bp. Next, we applied this method to 62 different species (54 genera) of macrofungi, including edible mushrooms, such as Pleurotus ostreatus, and medicinal mushrooms such as Cordyceps militaris. It was found that our method is widely applicable to both ascomycetes and basidiomycetes. We expect that our method will contribute to accelerating PCR-based approaches, such as molecular identification, DNA marker typing, gene cloning, and transformant screening, in macrofungal studies.

• Mycobiology
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• 제31권1호
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• pp.23-31
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• 2003

With universal primer ITS1-F, the specific DHJ2 primer was developed to detect the Ectomycorrhizal(ECM) root tips in soil and to identify the species of ECM fungi, as based on DNA sequences of rDNA stored in GeneBank of NCBI. This primer was designed with the common sites of rDNA of Amanita and Boletus, and was also designed with several DNA programs provided by NCBI. The DNA fragments synthesized by PCR were calculated to be 1,000 to 1,200 bps of DNA located to 18s to 28s rDNA to contain two variable sites of ITS, indicating much diversities for specific species or ecotypes of ECM fungi. The primer DHJ2 reacted with the genomic DNA's extracted from the tissues of basidiocarp at the rate of 73 of 80 fungi collected produced single bands with a 1,100 bps length. The DNA fragment synthesized with the genomic DNA that extracted from eight ECM tips of Pinus densiflora was confirmed and analysized to the rDNAs of ECM in full sequences, and informed to be a ECM fungal species in the forest.