• 제목/요약/키워드: File Database

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DNA Chip Database for the Korean Functional Genomics Project

  • Kim, Sang-Soo
    • 한국생물정보학회:학술대회논문집
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    • 한국생물정보시스템생물학회 2001년도 제2회 생물정보 워크샵 (DNA Chip Bioinformatics)
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    • pp.11-28
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    • 2001
  • The Korean functional Genomics Project focuses on stomach and liver cancers. Specimens collected by six hospital teams are used in BNA microarray experiments. Experimental conditions, spot measurement data, and the associated clinical information are stored in a relational database. Microarray database schema was developed based on EBI's ArrayExpress. A diagrammatic representation of the schema is used to help navigate over marty tables in the database. Field description, table-to-table relationship, and other database features are also stored in the database and these are used by a PERL interface program to generate web-based input forms on the fly. As such, it is rather simple to modify the database definition and implement controlled vocabularies. This PERL program is a general-purpose utility which can be used for inputting and updating data in relational databases. It supports file upload and user-supplied filters of uploaded data. Joining related tables is implemented using JavaScripts, allowing this step to be deferred to a later stage. This feature alleviates the pain of inputting data into a multi-table database and promotes collaborative data input among several teams. Pathological finding, clinical laboratory parameters, demographical information, and environmental factors are also collected and stored in a separate database. The same PERL program facilitated developing this database and its user-interface.

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멀티코어 및 고성능 플래시 SSD 환경에서 저널링 파일 시스템의 성능 평가 및 최적화 (Performance Evaluation and Optimization of Journaling File Systems with Multicores and High-Performance Flash SSDs)

  • 한혁
    • 한국콘텐츠학회논문지
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    • 제18권4호
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    • pp.178-185
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    • 2018
  • 최근 클라우드 컴퓨팅, 슈퍼컴퓨팅, 기업용 스토리지/데이터베이스 등의 분야에서 멀티코어 CPU와 고성능 플래시 메모리 기반 저장 장치(플래시 SSD)를 장착한 컴퓨더 시스템에 대한 수요가 크게 증가하고 있다. 이러한 고성능 시스템에서 구동되고 있는 대표적인 운영체제 파일 시스템인 저널링 파일 시스템은 저장장치의 입출력 성능을 최대로 활용하고 있지 못하다. 본 논문에서는 고성능 플래시 SSD와 멀티코어 CPU기반의 컴퓨터 시스템에서 리녹스 운영체제의 EXT4 저널링 파일 시스템의 성능을 평가하고 분석하고자 한다. 성능 평가에 사용된 72-코어 컴퓨터 시스템은 인텔의 고성능 NVMe 기반 플래시 SSD를 장착하고 있으며 이 장치의 연속 읽기/쓰기 성능은 2800/1900 MB/s 이다. 실험 결과는 EXT4 파일 시스템의 체크포인팅 연산이 성능상의 큰 오버헤드임을 보여준다. 이 결과를 바탕으로 체크포인팅을 여러 쓰레드가 수행할 수 있는 최적화 기법을 제안하였고, 최적화된 EXT4 파일 시스템은 기존 EXT4 파일 시스템 대비 최대 92%의 성능 향상을 보여준다.

ESE 데이터베이스 내의 삭제된 레코드 복구 기법 (A recovery method for deleted records in the ESE Database)

  • 김정현;최종현;이상진
    • 정보보호학회논문지
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    • 제25권5호
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    • pp.1143-1151
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    • 2015
  • Extensible Storage Engine (ESE) 데이터베이스는 Microsoft가 개발한 데이터베이스로 Internet Explorer, Spartan과 같은 웹브라우저와 Windows Search, System Resource Usage Monitor와 같은 윈도우 시스템에서 주요하게 사용된다. 기존의 ESE 데이터베이스 뷰어는 잘못된 값을 출력할 수 있고 수집 환경과 파일의 상태에 따라 파일을 읽지 못하는 경우가 존재한다. 또한 삭제된 레코드 복구 도구는 일부 프로그램에 한정적이고 모든 테이블을 복구하지 못한다. 본 논문에서는 ESE 데이터베이스 구조를 분석하여 개별 데이터베이스가 아닌 범용적으로 적용할 수 있는 삭제된 레코드의 복구 기법을 제안하며 이를 도구로 구현하여 실험한 결과를 제시한다.

Construction of Retrieval-Based Medical Database

  • Shin Yong-Won;Koo Bong-Oh;Park Byung-Rae
    • 대한의생명과학회지
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    • 제10권4호
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    • pp.485-493
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    • 2004
  • In the current field of Medical Informatics, the information increases, and changes fast, so we can access the various data types which are ranged from text to image type. A small number of technician digitizes these data to establish database, but it is needed a lot of money and time. Therefore digitization by many end-users confronting data and establishment of searching database is needed to manage increasing information effectively. New data and information are taken fast to provide the quality of care, diagnosis which is the basic work in the medicine. And also It is needed the medical database for purpose of private study and novice education, which is tool to make various data become knowledge. However, current medical database is used and developed only for the purpose of hospital work management. In this study, using text input, file import and object images are digitized to establish database by people who are worked at the medicine field but can not expertise to program. Data are hierarchically constructed and then knowledge is established using a tree type database establishment method. Consequently, we can get data fast and exactly through search, apply it to study as subject-oriented classification, apply it to diagnosis as time-depended reflection of data, and apply it to education and precaution through function of publishing questions and reusability of data.

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PosCFS+: A Self-Managed File Service in Personal Area Network

  • Lee, Woo-Joong;Kim, Shi-Ne;Park, Chan-Ik
    • ETRI Journal
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    • 제29권3호
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    • pp.281-291
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    • 2007
  • Wearable computers consisting of various small devices such as smart phones, digital cameras, MP3 players and specialized I/O devices in personal area networks will play an important role in future ubiquitous computing. In this environment, accessing user data is quite complex due to the dynamic and heterogeneous characteristics of the underlying networks. Moreover, since the amount of user data increases rapidly, automatic data backup management is also critical. To overcome these challenges, several studies have been conducted including our previously proposed file service system, PosCFS, which could be adapted to the requirements with a virtualization technique allowing per-user global namespace for managing and accessing data stored on physical storage spaces detected in PAN. In this paper, we present a smart file service framework, PosCFS+ which is an improved and extended version of our previous work. Performance improvement is made possible by redesigning the metadata management scheme based on database and keywords rather than ontology. In addition, the automatic data replication management is newly designed based on the OSD protocol.

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와이어 컷 방전가공조건 데이터베이스 구축 및 상하이형상 가공 (Construction of a Database for Wire Cutting Electrodischarge Conditions and Variable taper Wire-cut Machining.)

  • 유우식;이규섭
    • 산업경영시스템학회지
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    • 제23권59호
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    • pp.119-127
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    • 2000
  • This paper describes the database for wire cutting electrodischarge conditions and variable taper wire-cut Machining. Electodischarge wire-cut machining is applicable to all materials that are fairly good electrical conductors, including metals, alloys, and most carbides. Thus it provides a relatively simple method for making holes of any desired cross section in materials that are too hard or brittle to be machined by most other methods. In conventional wire cutting CAM systems usually generate the NC code omitting electrodischarge conditions, so operator edits the NC code manually. But it is very inefficient. Therefore in this paper we propose a wire cutting CAM system including database for electrodischarge conditions. Proposed system consists of three steps: 1) Development of database for electrodischarge conditions 2) Development of CAM functions, Including 2D CAD modeling tools, file I/O functions, wire path genera tion functions and postprocessor. 3) Development of variable taper wire-cut machining module. The proposed system has been tested in the JinYoung precision Machine Co.,LTD. and found to be working satisfactorily.

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컴퓨터 소프트웨어 및 화일들을 위한 온라인 목록 개발시 MARC 형식의 적용 방안 (MARC FORMAT Implementation on the Development of An Online Catalog For Machine-Readable Data Files)

  • 문기주
    • 산업공학
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    • 제4권2호
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    • pp.93-101
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    • 1991
  • One of the major problems on the design of an online database for machine readable data file is on the implementation of MARC format for communication with the Library of Congress or OCLC. Most of the cataloging data to make manual card catalogs are stored on magnetic tapes based on the MARC format at LC or OCLC and are sent to local libraries. Therefore, local libraries can avoid the expensive process of cataloging for the books they own. Instead, they can retrieve the necessary cataloging information from the tape and print out manual card catalogs. A problem with MARC is that it is not designed for databases, but for portability to be read at any type of computer. Therfore, it is not practical to use the format on the development of an online database as long as the database is developed in conjunction with a commercial powerful database package. In this paper a possible methodology to resolve the conflicts between the objective of DBMS and MARC is discussed. It is to satisfy the requirements from a commercial DBMS while leaving a room for MARC to communicate with LC and OCLC.

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A Study of Middleware for Real-time Application with USN

  • Yu, Chun-Gun;Kim, Young-Rag;Kim, Chong-Gun;Kang, Byung-Wook
    • 한국정보컨버전스학회:학술대회논문집
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    • 한국정보컨버전스학회 2008년도 International conference on information convergence
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    • pp.71-74
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    • 2008
  • The current middleware, managing the bridges equipped whit sensor networks on real-time basis, merely processes the data collected from the sensor networks, In this study, we develop a very versatile middleware which mediates between sensor nodes and exclusive applications or web browsers. It collects and processes the data from the network. On database failures, it stores the data in a file and sends them to the database at a proper speed considering the rate of the database system when the database is restored. Lastly, in order to notice abnormality of the bridge to the operators when some problems occur in the bridge, we propose a mechanism for producing alarm signals.

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국가지진관측망 기반 지진동 데이터베이스 개발 연구 (A Study on Development of an Earthquake Ground-motion Database Based on the Korean National Seismic Network)

  • 최세운;이준기;이상현;강태섭
    • 한국지진공학회논문집
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    • 제24권6호
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    • pp.277-283
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    • 2020
  • In order to improve the ground-motion prediction equation, which is an important factor in seismic hazard assessment, it is essential to obtain good quality seismic data for a region. The Korean Peninsula has an environment in which it is difficult to obtain strong ground motion data. However, because digital seismic observation networks have become denser since the mid-2000s and moderate earthquake events such as the Odaesan earthquake (Jan. 20, 2007, ML 4.8), the 9.12 Gyeongju earthquake (Sep. 12, 2016, ML 5.8), and the Pohang earthquake (Nov. 15, 2017, ML 5.4) have occurred, some good empirical data on ground motion could have been accumulated. In this study, we tried to build a ground motion database that can be used for the development of the ground motion attenuation equation by collecting seismic data accumulated since the 2000s. The database was constructed in the form of a flat file with RotD50 peak ground acceleration, 5% damped pseudo-spectral acceleration, and meta information related to hypocenter, path, site, and data processing. The seismic data used were the velocity and accelerogram data for events over ML 3.0 observed between 2003 and 2019 by the Korean National Seismic Network administered by the Korea Meteorological Administration. The final flat file contains 10,795 ground motion data items for 141 events. Although this study focuses mainly on organizing earthquake ground-motion waveforms and their data processing, it is thought that the study will contribute to reducing uncertainty in evaluating seismic hazard in the Korean Peninsula if detailed information about epicenters and stations is supplemented in the future.

의료기관간 효과적인 의료정보 공유를 위한 WISD의 설계 및 구현 (Implementation and Design of WISD(Web Interface System based DICOM) for Efficient Sharing of Medical Information between Clinics)

  • 조익성;권혁숭
    • 한국정보통신학회논문지
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    • 제12권3호
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    • pp.500-508
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    • 2008
  • 의료정보는 의료기관간의 호환을 위해서 텍스트 기반정보를 위한 HL7과 영상정보를 위한 DICOM과 같은 표준프로토콜로 구축되어야 한다. 하지만 각 의료기관에서 소유하고 있는 장비 및 개발된 정보시스템이 동일하지 않고 자료의 형태 및 사용하는 코드체계가 상이하여 의료기관간에 자료를 교환하고자 할 때는 상당한 어려움이 초래된다. 따라서 의료기관간 효율적으로 정보를 공유하고 교환하기 위해서는 먼저 DICOM 파일의 특성을 분석하고 이를 기초로 한 통합 데이터베이스를 설계해야한다. 본 논문에서 제안한 WISD(Web Interface System based DICOM) 시스템은 각 의료기관에서 전송 받은 DICOM 파일을 의료정보와 영상정보로 분리하고, 표준화된 형식으로 통합데이터베이스에 저장하며, 웹브라우저를 통해 정보의 검색 및 교환을 가능하게 한다. 본 논문에서 구현한 WISD 시스템은 통합데이터베이스와 인터넷을 통해 의료영상과 환자정보를 검색 및 관리할 수 있기 때문에 별도의 시스템도입 및 비용 없이 의료기관간 효율적인 공유를 할 수 있다.