• Title/Summary/Keyword: Disease forecast model

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Simulation of Grape Downy Mildew Development Across Geographic Areas Based on Mesoscale Weather Data Using Supercomputer

  • Kim, Kyu-Rang;Seem, Robert C.;Park, Eun-Woo;Zack, John W.;Magarey, Roger D.
    • The Plant Pathology Journal
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    • v.21 no.2
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    • pp.111-118
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    • 2005
  • Weather data for disease forecasts are usually derived from automated weather stations (AWS) that may be dispersed across a region in an irregular pattern. We have developed an alternative method to simulate local scale, high-resolution weather and plant disease in a grid pattern. The system incorporates a simplified mesoscale boundary layer model, LAWSS, for estimating local conditions such as air temperature and relative humidity. It also integrates special models for estimating of surface wetness duration and disease forecasts, such as the grapevine downy mildew forecast model, DMCast. The system can recreate weather forecasts utilizing the NCEP/NCAR reanalysis database, which contains over 57 years of archived and corrected global upper air conditions. The highest horizontal resolution of 0.150 km was achieved by running 5-step nested child grids inside coarse mother grids. Over the Finger Lakes and Chautauqua Lake regions of New York State, the system simulated three growing seasons for estimating the risk of grape downy mildew with 1 km resolution. Outputs were represented as regional maps or as site-specific graphs. The highest resolutions were achieved over North America, but the system is functional for any global location. The system is expected to be a powerful tool for site selection and reanalysis of historical plant disease epidemics.

Application of smart mosquito monitoring traps for the mosquito forecast systems by Seoul Metropolitan city

  • Na, Sumi;Yi, Hoonbok
    • Journal of Ecology and Environment
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    • v.44 no.2
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    • pp.98-105
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    • 2020
  • Background: The purpose of this study, mosquito forecast system implemented by Seoul Metropolitan city, was to obtain the mosquito prediction formula by using the mosquito population data and the environmental data of the past. Results: For this study, the mosquito population data from April 1, 2015, to October 31, 2017, were collected. The mosquito population data were collected from the 50 smart mosquito traps (DMSs), two of which were installed in each district (Korean, gu) in Seoul Metropolitan city since 2015. Environmental factors were collected from the Automatic Weather System (AWS) by the Korea Meteorological Administration. The data of the nearest AWS devices from each DMS were used for the prediction formula analysis. We found out that the environmental factors affecting the mosquito population in Seoul Metropolitan city were the mean temperature and rainfall. We predicted the following equations by the generalized linear model analysis: ln(Mosquito population) = 2.519 + 0.08 × mean temperature + 0.001 × rainfall. Conclusions: We expect that the mosquito forecast system would be used for predicting the mosquito population and to prevent the spread of disease through mosquitoes.

A Machine Learning Univariate Time series Model for Forecasting COVID-19 Confirmed Cases: A Pilot Study in Botswana

  • Mphale, Ofaletse;Okike, Ezekiel U;Rafifing, Neo
    • International Journal of Computer Science & Network Security
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    • v.22 no.1
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    • pp.225-233
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    • 2022
  • The recent outbreak of corona virus (COVID-19) infectious disease had made its forecasting critical cornerstones in most scientific studies. This study adopts a machine learning based time series model - Auto Regressive Integrated Moving Average (ARIMA) model to forecast COVID-19 confirmed cases in Botswana over 60 days period. Findings of the study show that COVID-19 confirmed cases in Botswana are steadily rising in a steep upward trend with random fluctuations. This trend can also be described effectively using an additive model when scrutinized in Seasonal Trend Decomposition method by Loess. In selecting the best fit ARIMA model, a Grid Search Algorithm was developed with python language and was used to optimize an Akaike Information Criterion (AIC) metric. The best fit ARIMA model was determined at ARIMA (5, 1, 1), which depicted the least AIC score of 3885.091. Results of the study proved that ARIMA model can be useful in generating reliable and volatile forecasts that can used to guide on understanding of the future spread of infectious diseases or pandemics. Most significantly, findings of the study are expected to raise social awareness to disease monitoring institutions and government regulatory bodies where it can be used to support strategic health decisions and initiate policy improvement for better management of the COVID-19 pandemic.

Development of a Maryblyt-based Forecasting Model for Kiwifruit Bacterial Blossom Blight (Maryblyt 기반 참다래 꽃썩음병 예측모형 개발)

  • Kim, Kwang-Hyung;Koh, Young Jin
    • Research in Plant Disease
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    • v.21 no.2
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    • pp.67-73
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    • 2015
  • Bacterial blossom blight of kiwifruit (Actinidia deliciosa) caused by Pseudomonas syringae pv. syringae is known to be largely affected by weather conditions during the blooming period. While there have been many studies that investigated scientific relations between weather conditions and the epidemics of bacterial blossom blight of kiwifruit, no forecasting models have been developed thus far. In this study, we collected all the relevant information on the epidemiology of the blossom blight in relation to weather variables, and developed the Pss-KBB Risk Model that is based on the Maryblyt model for the fire blight of apple and pear. Subsequent model validation was conducted using 10 years of ground truth data from kiwifruit orchards in Haenam, Korea. As a result, it was shown that the Pss-KBB Risk Model resulted in better performance in estimating the disease severity compared with other two simple models using either temperature or precipitation information only. Overall, we concluded that by utilizing the Pss-KBB Risk Model and weather forecast information, potential infection risk of the bacterial blossom blight of kiwifruit can be accurately predicted, which will eventually lead kiwifruit growers to utilize the best practices related to spraying chemicals at the most effective time.

Prediction for spatial time series models with several weight matrices (여러 가지 가중행렬을 가진 공간 시계열 모형들의 예측)

  • Lee, Sung Duck;Ju, Su In;Lee, So Hyun
    • Journal of the Korean Data and Information Science Society
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    • v.28 no.1
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    • pp.11-20
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    • 2017
  • In this paper, we introduced linear spatial time series (space-time autoregressive and moving average model) and nonlinear spatial time series (space-time bilinear model). Also we estimated the parameters by Kalman Filter method and made comparative studies of power of forecast in the final model. We proposed several weight matrices such as equal proportion allocation, reciprocal proportion between distances, and proportion of population sizes. For applications, we collected Mumps data at Korea Center for Disease Control and Prevention from January 2001 until August 2008. We compared three approaches of weight matrices using the Mumps data. Finally, we also decided the most effective model based on sum of square forecast error.

Forecasting COVID-19 confirmed cases in South Korea using Spatio-Temporal Graph Neural Networks

  • Ngoc, Kien Mai;Lee, Minho
    • International Journal of Contents
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    • v.17 no.3
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    • pp.1-14
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    • 2021
  • Since the outbreak of the coronavirus disease 2019 (COVID-19) pandemic, a lot of efforts have been made in the field of data science to help combat against this disease. Among them, forecasting the number of cases of infection is a crucial problem to predict the development of the pandemic. Many deep learning-based models can be applied to solve this type of time series problem. In this research, we would like to take a step forward to incorporate spatial data (geography) with time series data to forecast the cases of region-level infection simultaneously. Specifically, we model a single spatio-temporal graph, in which nodes represent the geographic regions, spatial edges represent the distance between each pair of regions, and temporal edges indicate the node features through time. We evaluate this approach in COVID-19 in a Korean dataset, and we show a decrease of approximately 10% in both RMSE and MAE, and a significant boost to the training speed compared to the baseline models. Moreover, the training efficiency allows this approach to be extended for a large-scale spatio-temporal dataset.

Research on Application of SIR-based Prediction Model According to the Progress of COVID-19 (코로나-19 진행에 따른 SIR 기반 예측모형적용 연구)

  • Hoon Kim;Sang Sup Cho;Dong Woo Chae
    • Journal of Information Technology Applications and Management
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    • v.31 no.1
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    • pp.1-9
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    • 2024
  • Predicting the spread of COVID-19 remains a challenge due to the complexity of the disease and its evolving nature. This study presents an integrated approach using the classic SIR model for infectious diseases, enhanced by the chemical master equation (CME). We employ a Monte Carlo method (SSA) to solve the model, revealing unique aspects of the SARS-CoV-2 virus transmission. The study, a first of its kind in Korea, adopts a step-by-step and complementary approach to model prediction. It starts by analyzing the epidemic's trajectory at local government levels using both basic and stochastic SIR models. These models capture the impact of public health policies on the epidemic's dynamics. Further, the study extends its scope from a single-infected individual model to a more comprehensive model that accounts for multiple infections using the jump SIR prediction model. The practical application of this approach involves applying these layered and complementary SIR models to forecast the course of the COVID-19 epidemic in small to medium-sized local governments, particularly in Gangnam-gu, Seoul. The results from these models are then compared and analyzed.

A Forecasting System for Lung Cancer Sensitivities Using SNP Data

  • Ryoo, Myung-Chun;Kim, Sang-Jin;Park, Chang-Hyeon
    • 한국정보컨버전스학회:학술대회논문집
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    • 2008.06a
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    • pp.191-194
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    • 2008
  • SNP(Single Nucleotide Polymorphism) refers to the difference in a base pair existed in DNAs of individuals. Each of it appears per 1,000 bases in human genome and it enables each gene to defer in junctions, interacts with each other to make different shapes of humans, and produces different disease sensitivities. In this paper, we propose a system to forecast lung cancer sensitivities using SNP data related with the lung cancer. A lung cancer sensitivity forecasting model is also constructed through analysis of genetic and non-genetic factors for squamous cell carcinomas, adeno carcinomas, and small cell carcinomas that may frequently appear in Korean. The proposed system with the model gives the probabilities of the onset of lung cancers in the experimental subjects.

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