• Title/Summary/Keyword: Deoxyribonucleic Acid (DNA)

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Breast Milk-Transmitted Cytomegalovirus Infection in Preterm Infants

  • Gang, Mi Hyeon;Chang, Mea-young
    • Neonatal Medicine
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    • 제25권2호
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    • pp.58-65
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    • 2018
  • Purpose: The purpose of this study is to describe the rate of cytomegalovirus (CMV) virolactia, and the prevalence of breast milk (BM)-transmitted postnatal CMV infection among premature infants after freeze-thawing (FT) and Holder pasteurization (HP) of breast milk. Methods: This is a single-center, retrospective study of 312 infants born at less than 32 weeks of gestation, or with a birth weight less than 1,500 g from January 2013 to June 2017. All infants were screened for CMV-specific immunoglobulin (Ig) G and IgM at birth. Initial CMV specific polymerase chain reaction (PCR) and CMV culture were performed on mothers' BM and babies' urine within the first 21 days of life. FT and HP of BM was used to prevent the transmission of CMV. For the surveillance of postnatal CMV infection, CMV culture and CMV specific PCR of urine from babies were repeated one to two months after the initial screening. Screening for viremia and viruria was performed if postnatal CMV infection was suspected. Results: Among 178 BM samples obtained from mothers of CMV-IgG-seropositive infants, 80 (44.9%) were CMV PCR positive. CMV deoxyribonucleic acid (DNA) was detected in five of the 22 BM samples (22.7%) obtained from the mothers of CMV-IgG seronegative infants. When CMV DNA load in BM was measured before and after HP, various results were shown. Sixty-three infants out of 232 (27.2%) were evaluated for postnatal CMV infection and four infants out of 63 (6.3%) were infected. Conclusion: Interventions to prevent BM-transmitted CMV infection can reduce the chance of postnatal CMV infection, but not completely eliminate it.

Profiling Bartonella infection and its associated risk factors in shelter cats in Malaysia

  • Nurul Najwa Ainaa Alias;Sharina Omar;Nur Indah Ahmad;Malaika Watanabe;Sun Tee Tay;Nor Azlina Aziz;Farina Mustaffa-Kamal
    • Journal of Veterinary Science
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    • 제24권3호
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    • pp.38.1-38.12
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    • 2023
  • Background: Poor disease management and irregular vector control could predispose sheltered animals to disease such as feline Bartonella infection, a vector-borne zoonotic disease primarily caused by Bartonella henselae. Objectives: This study investigated the status of Bartonella infection in cats from eight (n = 8) shelters by molecular and serological approaches, profiling the CD4:CD8 ratio and the risk factors associated with Bartonella infection in shelter cats. Methods: Bartonella deoxyribonucleic acid (DNA) was detected through polymerase chain reaction (PCR) targeting 16S-23S rRNA internal transcribed spacer gene, followed by DNA sequencing. Bartonella IgM and IgG antibody titre, CD4 and CD8 profiles were detected using indirect immunofluorescence assay and flow cytometric analysis, respectively. Results: B. henselae was detected through PCR and sequencing in 1.0% (1/101) oral swab and 2.0% (1/50) cat fleas, while another 3/50 cat fleas carried B. clarridgeiae. Only 18/101 cats were seronegative against B. henselae, whereas 30.7% (31/101) cats were positive for both IgM and IgG, 8% (18/101) cats had IgM, and 33.7% (34/101) cats had IgG antibody only. None of the eight shelters sampled had Bartonella antibody-free cats. Although abnormal CD4:CD8 ratio was observed in 48/83 seropositive cats, flea infestation was the only significant risk factor observed in this study. Conclusions: The present study provides the first comparison on the Bartonella spp. antigen, antibody status and CD4:CD8 ratio among shelter cats. The high B. henselae seropositivity among shelter cats presumably due to significant flea infestation triggers an alarm of whether the infection could go undetectable and its potential transmission to humans.

Condurango (Gonolobus condurango) Extract Activates Fas Receptor and Depolarizes Mitochondrial Membrane Potential to Induce ROS-dependent Apoptosis in Cancer Cells in vitro -CE-treatment on HeLa: a ROS-dependent mechanism-

  • Bishayee, Kausik;Mondal, Jesmin;Sikdar, Sourav;Khuda-Bukhsh, Anisur Rahman
    • 대한약침학회지
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    • 제18권3호
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    • pp.32-41
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    • 2015
  • Objectives: Condurango (Gonolobus condurango) extract is used by complementary and alternative medicine (CAM) practitioners as a traditional medicine, including homeopathy, mainly for the treatment of syphilis. Condurango bark extract is also known to reduce tumor volume, but the underlying molecular mechanisms still remain unclear. Methods: Using a cervical cancer cell line (HeLa) as our model, the molecular events behind condurango extract's (CE's) anticancer effect were investigated by using flow cytometry, immunoblotting and reverse transcriptase-polymerase chain reaction (RT-PCR). Other included cell types were prostate cancer cells (PC3), transformed liver cells (WRL-68), and peripheral blood mononuclear cells (PBMCs). Results: Condurango extract (CE) was found to be cytotoxic against target cells, and this was significantly deactivated in the presence of N-acetyl cysteine (NAC), a scavenger of reactive oxygen species (ROS), suggesting that its action could be mediated through ROS generation. CE caused an increase in the HeLa cell population containing deoxyribonucleic acid (DNA) damage at the G zero/Growth 1 (G0/G1) stage. Further, CE increased the tumor necrosis factor alpha ($TNF-{\alpha}$) and the fas receptor (FasR) levels both at the ribonucleic acid (RNA) and the protein levels, indicating that CE might have a cytotoxic mechanism of action. CE also triggered a sharp decrease in the expression of nuclear factor kappa-light-chain-enhancer of activated B cells ($NF-{\kappa}B$) both at the RNA and the protein levels, a possible route to attenuation of B-cell lymphoma 2 (Bcl-2), and caused an opening of the mitochondrial membrane's permeability transition (MPT) pores, thus enhancing caspase activities. Conclusion: Overall, our results suggest possible pathways for CE mediated cytotoxicity in model cancer cells.

Effects of alfalfa flavonoids extract on the microbial flora of dairy cow rumen

  • Zhan, Jinshun;Liu, Mingmei;Wu, Caixia;Su, Xiaoshuang;Zhan, Kang;Zhao, Guo qi
    • Asian-Australasian Journal of Animal Sciences
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    • 제30권9호
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    • pp.1261-1269
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    • 2017
  • Objective: The effect of flavonoids from alfalfa on the microbial flora was determined using molecular techniques of 16S ribosome deoxyribonucleic acid (rDNA) analysis. Methods: Four primiparous Holstein heifers fitted with ruminal cannulas were used in a $4{\times}4$ Latin square design and fed a total mixed ration to which alfalfa flavonoids extract (AFE) was added at the rates of 0 (A, control), 20 (B), 60 (C), or 100 (D) mg per kg of heifer BW. Results: The number of operational taxonomic units in heifers given higher levels of flavonoid extract (C and D) was higher than for the two other treatments. The Shannon, Ace, and Chao indices for treatment C were significantly higher than for the other treatments (p<0.05). The number of phyla and genera increased linearly with increasing dietary supplementation of AFE (p<0.05). The principal co-ordinates analysis plot showed substantial differences in the microbial flora for the four treatments. The microbial flora in treatment A was similar to that in B, C, and D were similar by the weighted analysis. The richness of Tenericutes at the phylum level tended to increase with increasing AFE (p = 0.10). The proportion of Euryarchaeota at the phylum level increased linearly, whereas the proportion of Fusobacteria decreased linearly with increasing AFE supplementation (p = 0.04). The percentage of Mogibacterium, Pyramidobacter, and Asteroleplasma at the genus level decreased linearly with increasing AFE (p<0.05). The abundance of Spirochaeta, Succinivibrio, and Suttonella at the genus level tended to decrease linearly with increasing AFE (0.05

Implementation of a bio-inspired two-mode structural health monitoring system

  • Lin, Tzu-Kang;Yu, Li-Chen;Ku, Chang-Hung;Chang, Kuo-Chun;Kiremidjian, Anne
    • Smart Structures and Systems
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    • 제8권1호
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    • pp.119-137
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    • 2011
  • A bio-inspired two-mode structural health monitoring (SHM) system based on the Na$\ddot{i}$ve Bayes (NB) classification method is discussed in this paper. To implement the molecular biology based Deoxyribonucleic acid (DNA) array concept in structural health monitoring, which has been demonstrated to be superior in disease detection, two types of array expression data have been proposed for the development of the SHM algorithm. For the micro-vibration mode, a two-tier auto-regression with exogenous (AR-ARX) process is used to extract the expression array from the recorded structural time history while an ARX process is applied for the analysis of the earthquake mode. The health condition of the structure is then determined using the NB classification method. In addition, the union concept in probability is used to improve the accuracy of the system. To verify the performance and reliability of the SHM algorithm, a downscaled eight-storey steel building located at the shaking table of the National Center for Research on Earthquake Engineering (NCREE) was used as the benchmark structure. The structural response from different damage levels and locations was collected and incorporated in the database to aid the structural health monitoring process. Preliminary verification has demonstrated that the structure health condition can be precisely detected by the proposed algorithm. To implement the developed SHM system in a practical application, a SHM prototype consisting of the input sensing module, the transmission module, and the SHM platform was developed. The vibration data were first measured by the deployed sensor, and subsequently the SHM mode corresponding to the desired excitation is chosen automatically to quickly evaluate the health condition of the structure. Test results from the ambient vibration and shaking table test showed that the condition and location of the benchmark structure damage can be successfully detected by the proposed SHM prototype system, and the information is instantaneously transmitted to a remote server to facilitate real-time monitoring. Implementing the bio-inspired two-mode SHM practically has been successfully demonstrated.

Methylation Status of the O6-Methylguanine-Deoxyribonucleic Acid Methyltransferase Gene Promoter in World Health Organization Grade III Gliomas

  • Yang, Seung-Heon;Kim, Yong-Hwy;Kim, Jin-Wook;Park, Chul-Kee;Park, Sung-Hye;Jung, Hee-Won
    • Journal of Korean Neurosurgical Society
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    • 제46권4호
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    • pp.385-388
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    • 2009
  • Objective : We analyzed the methylation status of the O6-methylguanine-DNA methyltransferase (MGMT) gene promoter in World Health Organization (WHO) grade III gliomas in association with other molecular markers to evaluate their prevalence. Methods : The samples of a total of 36 newly WHO grade III glioma patients including 19 anaplastic oligodendrogliomas (AO), 7 anaplastic oligoastrocytomas (AOA), and 10 anaplastic astrocytomas (AA) were analyzed. The methylation status of the MGMT gene promoter was confirmed by methylation-specific polymerase chain reaction. The 1p/19q chromosomal deletion status and EGFR amplification were assessed by Fluorescence In-Situ Hybridization. MGMT, EGFR, EGFRvlll, and p53 expression were analyzed by immunohistochemical staining. Results : The MGMT gene promoter was methylated in 32 (88.9%) and unmethylated in 4 (11.2%) Among them, all of the AO and AOA had methylated MGMT gene promoter without exception. Significant associations between MGMT gene promoter hypermethylation and 1p/19q deletion was observed (p=0.003). Other molecular markers failed to show significant associations between MGMT gene promoter statuses. Conclusion : There was extensive epigenetic silencing of MGMT gene in high grade gliomas with oligodendroglial component. Together with frequent 1p/19q co-deletion in oligodendroglial tumors, this may add plausible explanations supporting the relative favorable prognosis in oligodendroglial tumors compared with pure astrocytic tumors.

Identification and validation of putative biomarkers by in silico analysis, mRNA expression and oxidative stress indicators for negative energy balance in buffaloes during transition period

  • Savleen Kour;Neelesh Sharma;Praveen Kumar Guttula;Mukesh Kumar Gupta;Marcos Veiga dos Santos;Goran Bacic;Nino Macesic;Anand Kumar Pathak;Young-Ok Son
    • Animal Bioscience
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    • 제37권3호
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    • pp.522-535
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    • 2024
  • Objective: Transition period is considered from 3 weeks prepartum to 3 weeks postpartum, characterized with dramatic events (endocrine, metabolic, and physiological) leading to occurrence of production diseases (negative energy balance/ketosis, milk fever etc). The objectives of our study were to analyze the periodic concentration of serum beta-hydroxy butyric acid (BHBA), glucose and oxidative markers along with identification, and validation of the putative markers of negative energy balance in buffaloes using in-silico and quantitative real time-polymerase chain reaction (qRT-PCR) assay. Methods: Out of 20 potential markers of ketosis identified by in-silico analysis, two were selected and analyzed by qRT-PCR technique (upregulated; acetyl serotonin o-methyl transferase like and down regulated; guanylate cyclase activator 1B). Additional two sets of genes (carnitine palmotyl transferase A; upregulated and Insulin growth factor; downregulated) that have a role of hepatic fatty acid oxidation to maintain energy demands via gluconeogenesis were also validated. Extracted cDNA (complementary deoxyribonucleic acid) from the blood of the buffaloes were used for validation of selected genes via qRTPCR. Concentrations of BHBA, glucose and oxidative stress markers were identified with their respective optimized protocols. Results: The analysis of qRT-PCR gave similar trends as shown by in-silico analysis throughout the transition period. Significant changes (p<0.05) in the levels of BHBA, glucose and oxidative stress markers throughout this period were observed. This study provides validation from in-silico and qRT-PCR assays for potential markers to be used for earliest diagnosis of negative energy balance in buffaloes. Conclusion: Apart from conventional diagnostic methods, this study improves the understanding of putative biomarkers at the molecular level which helps to unfold their role in normal immune function, fat synthesis/metabolism and oxidative stress pathways. Therefore, provides an opportunity to discover more accurate and sensitive diagnostic aids.

Cytokine-like Activity of Liver Type Fatty Acid Binding Protein (L-FABP) Inducing Inflammatory Cytokine Interleukin-6

  • Hyunwoo Kim;Gaae Gil;Siyoung Lee;Areum Kwak;Seunghyun Jo;Ensom Kim;Tam T. Nguyen;Sinae Kim;Hyunjhung Jhun;Somi Kim;Miyeon Kim;Youngmin Lee;Soohyun Kim
    • IMMUNE NETWORK
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    • 제16권5호
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    • pp.296-304
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    • 2016
  • It has been reported that fatty acid binding proteins (FABPs) do not act only as intracellular mediators of lipid responses but also have extracellular functions. This study aimed to investigate whether extracellular liver type (L)-FABP has a biological activity and to determined serum L-FABP levels in patients with end-stage renal disease (ESRD). We isolated L-FABP complementary deoxyribonucleic acid (cDNA) from the Huh7 human hepatocarcinoma cell line and expressed the recombinant L-FABP protein in Escherichia coli. A549 lung carcinoma and THP-1 monocytic cells were stimulated with the human recombinant L-FABP. Human whole blood cells were also treated with the human recombinant L-FABP or interleukin (IL)-1α. IL-6 levels were measured in cell culture supernatants using IL-6 enzyme-linked immunosorbent assay (ELISA). Human recombinant L-FABP induced IL-6 in a dose-dependent manner in A549, THP-1 cells, and whole blood cells. The blood samples of healthy volunteers and patients with ESRD were taken after an overnight fast. The serum levels of L-FABP in healthy volunteers and ESRD patients were quantified with L-FABP ELISA. The values of L-FABP in patients with ESRD were significantly lower than those in the control group. Our results demonstrated the biological activity of L-FABP in human cells suggesting L-FABP can be a mediator of inflammation.

전리방사선이 세포질 소기관의 미세구조변화와 기전에 미치는 영향 (The Effect of Ionizing Radiation on the Ultrastructural Changes and Mechanism on the Cytoplasmic Organelles)

  • 이무석;이종규;남지호;하태영;임영현;길상형
    • 생명과학회지
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    • 제27권6호
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    • pp.708-725
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    • 2017
  • 전리방사선은 물질과 상호작용하여 원자내의 중성자나 양성자, 궤도전자를 충분히 제거시킬 수 있는 에너지이다. 이와 같은 전리방사선은 DNA이나 세포질 소기관과 세포질의 방사선 분해 생성물을 통해 직접적, 간접적으로 상호작용하여 분자구조를 변화시키는 산화적 대사를 일으킨다. 이러한 전리 현상은 분자수준에서 조직을 손상시키고, 세포 기능을 파괴할 수 있다. 따라서, 전리방사선에 의해 유도된 이온채널과 수송 변형이 보고되고 있다. 이러한 현상이 항상성을 유지하기 위한 생화학적 과정을 무너뜨리면, 유도된 생물학적 변화가 지속되고 후대로 영향을 미친다. 또한, 전리방사선의 영향으로 형성된 활성산소는 세포연접을 통해 인접세포로 퍼져 나갈 수 있다. 방사선량, 선량률, 선질에 따라 이러한 메커니즘이 충분히 방어할 수도 있고 그렇지 않을 수도 있다. 본 총설에서는 방사선생물학의 개념을 뒷받침하는 전리방사선의 세포수준에서 생물학적 효과에 대한 보고서를 간략히 알아보았다. 전리방사선의 생물학적 효과를 잘 이해하면 방사선을 잘 이용할 수 있고, 방사선피폭으로부터 더 나은 방호를 할 수 있을 것이다.

Meta-analysis를 이용한 UVB 조사량에 따른 피부암 발생 위해도의 예측 연구 (Prediction of the risk of skin cancer caused by UVB radiation exposure using a method of meta-analysis)

  • 신동천;이종태;양지연
    • Journal of Preventive Medicine and Public Health
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    • 제31권1호
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    • pp.91-103
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    • 1998
  • 성층권의 오존층 파괴로 수반되는 부작용에는 우주의 자외선이 차단되지 않고 지구표면에까지 도달하는 것을 들 수 있다. 이로 인하여 생태계 파괴를 비롯하여 기후이상 및 인체 건강장애 발생의 가능성이 높아진다고 알려져 있다. 특히 자외선 노출로 인한 피부암 발생에 관한 여러 연구결과가 보고 되었으며 이에 대한 종합적이고 신뢰성 있는 재평가 필요성이 대두되었으며 유사한 연구의 국내 수행이 제시되는 때이다. 이에 메타분석이라는 방법을 통하여 신뢰성있는 BAF 값을 추정하여 보고 이 지수를 국내 자료에 적용하여 국내 피부암 발생의 변화 양상을 자외선 증가와 함께 추정하여 보았다. 3개국의 자료를 일원화하여 추정된 UVB 계수는 지수함수 모델에 의해서는 $2.07\times10^{-6}$으로, 멱함수 모델에 의해서는 2.49로 산출되었으며, 이들 모두 통계적으로 유의한 것으로 나타났으며, 이 계수로부터 BAF 값을 추정한 결과, 서울 일부 지역에서의 UVB 조사량이 1% 증가되면, 피부암 발생률은 지수함수 모델에서는 1.90%, 멱함수 모델에서는 2.51%가 증가되는 것으로 산출되었으며, 이 연구에서 적용한 메타분석의 방법으로 제시된 위해도는 비교적 신뢰도가 높을 것으로 추정된다. 현재 우리나라에서의 비흑색종 피부암 발생율이 백만명당 11명이라고 가정할 때, UVB 조사량이 1% 증가됨으로 인해 국내 비흑색종 피부암 발생율은 백만명당 11.1명$\sim$11.3명으로 증가되는 것으로 예측된다. 이렇게 낮은 수준의 위해도에도 불구하고 자외선 노출이 피부암 발생의 원인적 요인이라는 것이 밝혀진 지금, 이에 대한 불필요한 노출을 가능한 삼가고 계속적인 관심을 두어야 할 것이다.

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