• Title/Summary/Keyword: Data Taxonomy

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Analysis of Risk Factors for Patient Safety Management (환자안전 관리를 위한 위험요인 분석)

  • Ahn, Sung-Hee
    • Journal of Korean Academy of Nursing Administration
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    • v.12 no.3
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    • pp.373-384
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    • 2006
  • Purpose: This is a pilot study to identify patient safety risk factors and strategies for patient safety management perceived by nurses. Methods: Data were collected and analyzed with an open questionnaire from April to May 2005, targeted on 100 nurses working in two hospitals. The issues were 'what are risk factors for patients, nurses, and other medical practitioners? How do they prevent with the aftermath of risk factors, causes of incidents?' For data analysis, types and frequency of risk factors were worked out, using the Australian Incident Monitoring System Taxonomy. Results: The types of patient safety risk factor perceived by nurses were as follows ; therapeutic devices or equipment, infrastructure and services (29.5%), nosocomial infections (16.3%), clinical processes or procedures (15.4%), behavior, human performance, violence, aggression, security and safety (12.2%), therapeutic agents (9.7%), injuries and pressure ulcers (8.7%), logistics, organization, documentation, and infrastructure technology (5.6%). Strategies for patient safety included training of prevention of infection, education about safety management for patients and medical professionals, establishment of reporting system, culture of care, pre-elimination of risk factors, cooperative system among employees, and sharing information. Conclusion: These results will be used to provide evidences for patient safety management and educational program.

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Meroparamycin Production by Newly Isolated Streptomyces sp. Strain MAR01: Taxonomy, Fermentation, Purification and Structural Elucidation

  • El-Naggar Moustafa Y.;El-Assar Samy A.;Abdul-Gawad Sahar M.
    • Journal of Microbiology
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    • v.44 no.4
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    • pp.432-438
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    • 2006
  • Twelve actinomycete strains were isolated from Egyptian soil. The isolated actinomycete strains were then screened with regard to their potential to generate antibiotics. The most potent of the producer strains was selected and identified. The cultural and physiological characteristics of the strain identified. the strain as a member of the genus Streptomyces. The nucleotide sequence of the 16S rRNA gene (1.5kb) of the most potent strain evidenced a 99% similarity with Streptomyces spp. and S. aureofaciens 16S rRNA genes, and the isolated strain was ultimately identified as Streptomyces sp. MAR01. The extraction of the fermentation broth of this strain resulted in the isolation of one major compound, which was active in vitro against gram-positive, gram-negative representatives and Candida albicans. The chemical structure of this bioactive compound was elucidated based on the spectroscopic data obtained from the application of MS, IR, UV, $^1H$ NMR, $^{13}C$ NMR, and elemental analysis techniques. Via comparison to the reference data in the relevant literature and in the database search, this antibiotic, which had a molecular formula of $C_{19}H_{29}NO_2$ and a molecular weight of 303.44, was determined to differ from those produced by this genus as well as the available known antibiotics. Therefore, this antibiotic was designated Meroparamycin.

Genome size estimation of 43 Korean Carex

  • LEE, Bora;CHO, Yanghoon;KIM, Sangtae
    • Korean Journal of Plant Taxonomy
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    • v.49 no.4
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    • pp.334-344
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    • 2019
  • The genome size is defined as the amount of DNA in an unreplicated gametic chromosome complement and is expressed as the 1C value. It is a fundamental parameter of organisms that is useful for studies of the genome, as well as biodiversity and conservation. The genome sizes of Korean plants, including Carex (Cyperaceae), have been poorly reported. In this study, we report the genome sizes of 43 species and infraspecific taxa of Korean Carex using flow cytometry, and these results represent about 24.4% of the Carex species and infraspecific taxa distributed on the Korean peninsula. The Plant DNA C-Value Database (release 7.1) updated with and now including our data (a total of 372 Carex accessions) shows that the average genome size of members of the Carex species is 0.47 pg (1C), and the largest genome (C. cuspidate Bertol.; 1C = 1.64 pg) is 8.2 times larger than the smallest (C. brownii Tuck., C. kobomugi Ohwi, C. nubigena D. Don ex Tilloch & Taylor, and C. paxii Kuk.; 1C = 0.20 pg). The large genomes are frequently found in the subgen. Carex, especially in sect. Aulocystis, sect. Digitatae, sect. Glaucae, sect. Paniceae, and sect. Siderostictae. Our data updates the current understanding of genome sizes in Carex. This will serve as the basis for understanding the phylogeny and evolution of Carex and will be especially useful for future genome studies.

A Study of Caring for the Elderly by the Families and Extended Families Within a Korcean Clan Village

  • Cho, Myoun-Gok
    • Journal of Korean Academy of Nursing
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    • v.33 no.4
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    • pp.495-502
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    • 2003
  • Purpose. This ethnography is aimed at describing the care-giving practices of the nuclear family and relatives of the elderly within a clan village in relation to their socio-cultural context. Four basic notions of the study came from Leininger's culture care theory and the nurse-client negotiation model of Anderson. In order to understand the cultural system of caring, the following questions were explored: What caring behaviors are performed for the elderly person in a clan and how do these behavior relate to the various components of that particular culture\ulcorner Method. Data for this study was gathered through twenty-one fieldwork expeditions between September 1994 and December 2002 using interviews and participant observation of 7 families drown from two extended families. Data was analyzed using the techniques of taxonomy, value, and proxemics analysis. Findings. The socio-cultural context of caring for elderly people, their caring values, and four categories of caring were explored. Values of caring and every day life in the clan were hierarchical, reciprocal, and collective. The four categories of caring were: being with, empowering, keeping territory, and enhancing spirituality. Conclusions. The results of this study can be used to understand culture-specific care and to provide culturally congruent care for the elderly in a clinical setting.

Taxonomic review of the Stewartia koreana Nakai ex Rehder (Theacease) (노각나무(Stewartia koreana, 차나무과)의 분류학적 재검토)

  • Kwon, Hyejin;Song, Hokyung;Kim, Muyeol
    • Korean Journal of Plant Taxonomy
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    • v.38 no.3
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    • pp.233-250
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    • 2008
  • Morphological and molecular data from the nuclear ribosomal ITS regions were examined to reevaluate the taxonomic position of the Korean endemic species, Stewartia koreana Nakai ex Rehder (Theaceae). Comparing to its morphologically closely related S. pseudocamellia Maxim, S. koreana has diagnostic characters including a larger leaf blade (10 cm length and 5.5 cm wide) and a longer pedicel (2.5 cm length). In addition, S. koreana formed a different clade from S. pseudocamellia in the ITS trees. The morphological and ITS sequence data supported S. koreana as a Korean endemic species distinct from the closely related species, S. pseudocamellia.

Cytospora elaeagnicola sp. nov. Associated with Narrow-leaved Oleaster Canker Disease in China

  • Zhang, Linxuan;Alvarez, Lourdes V.;Bonthond, Guido;Tian, Chengming;Fan, Xinlei
    • Mycobiology
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    • v.47 no.3
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    • pp.319-328
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    • 2019
  • Cytospora is a genus including important phytopathogens causing severe dieback and canker diseases distributed worldwide with a wide host range. However, identification of Cytospora species is difficult since the currently available DNA sequence data are insufficient. Aside the limited availability of ex-type sequence data, most of the genetic work is only based on the ITS region DNA marker which lacks the resolution to delineate to the species level in Cytospora. In this study, three fresh strains were isolated from the symptomatic branches of Elaeagnus angustifolia in Xinjiang Uygur Autonomous Region, China. Morphological observation and multi-locus phylogenetic analyses (ITS, LSU, ACT and RPB2) support these specimens are best accommodated as a distinct novel species of Cytospora. Cytospora elaeagnicola sp. nov. is introduced, having discoid, nearly flat, pycnidial conidiomata with hyaline, allantoid conidia, and differs from its relatives genetically and by host association.

Trimming conditions for DADA2 analysis in QIIME2 platform

  • Lee, Seo-Young;Yu, Yeuni;Chung, Jin;Na, Hee Sam
    • International Journal of Oral Biology
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    • v.46 no.3
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    • pp.146-153
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    • 2021
  • Accurate identification of microbes facilitates the prediction, prevention, and treatment of human diseases. To increase the accuracy of microbiome data analysis, a long region of the 16S rRNA is commonly sequenced via paired-end sequencing. In paired-end sequencing, a sufficient length of overlapping region is required for effective joining of the reads, and high-quality sequencing reads are needed at the overlapping region. Trimming sequences at the reads distal to a point where sequencing quality drops below a specific threshold enhance the joining process. In this study, we examined the effect of trimming conditions on the number of reads that remained after quality control and chimera removal in the Illumina paired-end reads of the V3-V4 hypervariable region. We also examined the alpha diversity and taxa assigned by each trimming condition. Optimum quality trimming increased the number of good reads and assigned more number of operational taxonomy units. The pre-analysis trimming step has a great influence on further microbiome analysis, and optimized trimming conditions should be applied for Divisive Amplicon Denoising Algorithm 2 analysis in QIIME2 platform.

Taxonomic Revision of the Genus Lactifluus (Russulales, Basidiomycota) of South Korea

  • Lee, Hyun;Wissitrassameewong, Komsit;Park, Myung Soo;Fong, Jonathan J.;Verbeken, Annemieke;Kim, Changmu;Lim, Young Woon
    • Mycobiology
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    • v.49 no.4
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    • pp.308-345
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    • 2021
  • Lactifluus (Pers.) Roussel is an ectomycorrhizal genus that was recently recognized to be distinct from the genus Lactarius. To date, 226 Lactifluus species have been reported worldwide. Misidentification of Lactifluus species is common because of intraspecific morphological variation, cryptic diversity, and the limited number of taxonomic keys available. Molecular data are indispensable for species delimitation; a multilocus phylogenetic analysis showed that most Asian Lactifluus species are not conspecific with morphologically similar species present on other continents. In particular, Korea has misused European and North American Lactifluus names. In this study, we evaluated the taxonomy of Lactifluus in Korea using both morphological and multilocus molecular (ITS, nrLSU, rpb1, and rpb2) data. We examined 199 Lactifluus specimens collected between 1980 and 2016, and a total of 24 species across the four Lactifluus subgenera were identified. All Korean species are distinct and clearly separated from European and North American species. Five taxa corresponded to previously described species from Asia and the remaining 19 taxa are confirmed as new species. Herein, we provide keys to the Korean Lactifluus species within their subgenera, molecular phylogenies, a summary of diversity, and detailed description of the new species.

A Study of Formalized Presentation of Worm based on time-based Behavioral sequences (시간적인 행동 패턴을 고려한 웜의 정형 표현 기법 연구)

  • Lee Min-Soo;Shon Tae-Shik;Cho Sang-Hyun;Kim Dong-Soo;Seo Jung-Taek;Sohn Ki-Wook;Moon Jong-Sub
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.16 no.3
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    • pp.53-64
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    • 2006
  • Worm analysis report currently produced by anti-virus companies closely resemble those of virus report and do not properly characterize the specific attributes of worms. In this paper, we propose formalized presentation method based on time-based behavioral sequences to more accurately characterize worms. we define a format based on the behavior and communication patterns that occur between an infected host and a target host. we also propose a method for presently worm analysis data with that format. We also compare our framework with analysis data provided by Symantec.

Symplocarpus koreanus (Araceae; Orontioideae), a new species based on morphological and molecular data

  • LEE, Joon Seon;KIM, Seon-Hee;KIM, Yongsung;KWON, Youl;YANG, JiYoung;CHO, Myong-Suk;KIM, Hye-Been;LEE, Sangryong;MAKI, Masayuki;KIM, Seung-Chul
    • Korean Journal of Plant Taxonomy
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    • v.51 no.1
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    • pp.1-9
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    • 2021
  • Symplocarpus koreanus (Araceae; Orontioideae) from Korea is described as new. Symplocarpus koreanus has long been considered to be conspecific with S. renifolius in Japan, but phylogenetic, morphological, and cytological data indicate its taxonomic distinction. Compared to S. renifolius, S. koreanus has a much smaller spathe and more spherical spadix with fewer, smaller flowers. Previous phylogenetic studies also suggested that S. koreanus is more closely related to nonthermogenic S. nipponicus than to S. renifolius in Japan. Like its nonthermogenic sister species, S. nipponicus, in Korea and Japan, S. koreanus is diploid (2n = 2x = 30), while S. renifolius in Japan is tetraploid (2n = 4x = 60). A detailed species description, geographical distribution, major morphological differences between the species and a dichotomous key to the species in eastern Asia are provided.