• Title/Summary/Keyword: Data Copy

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Floating Primary Copy Method for Replica Control of Spatial Data (공간 데이터베이스의 중복 제어를 위한 Floating Primary Copy 기법)

  • 최진오
    • Proceedings of the Korea Multimedia Society Conference
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    • 2002.05c
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    • pp.68-72
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    • 2002
  • CIS 응용에서 공간 객체들이 여러 사이트에 걸쳐 중복 저장되어 있다면, 이 객체들의 수정 시 일관성 제어를 위한 중복 제어 기법이 필요하다. 그러나, 일반적인 비즈니스 데이터를 위한 정통적인 중복 제어기법은 공간 데이터에는 그대로 사용될 수 없다. 공간 데이터의 수정은 긴 트랜 션을 필요로 하며, 또한 일반 데이터와 달리 데이터간의 공간 종속성을 지니기 때문이다. 본 논문은 기존의 Primary Copy 중복 제어 기법을 확장하며, time-stamp에 기반하여 Primary Copy 사이트가 변경되는 Floating Primary Copy 기법을 제안한다. 본 논문에서 제안하는 중복 제어 기법은 Primary Copy 사이트를 동적으로 변경함으로써, 긴 트랜 션의 중복 일관성 제어를 지원할 수 있다.

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A Study on the Application of Zero Copy Technology to Improve the Transmission Efficiency and Recording Performance of Massive Data (대용량 데이터의 전송 효율 및 기록 성능 향상을 위한 Zero Copy 기술 적용에 관한 연구)

  • Song, Min-Gyu;Kim, Hyo-Ryoung;Kang, Yong-Woo;Je, Do-Heung;Wi, Seog-Oh;Lee, Sung-Mo;Kim, Seung-Rae
    • The Journal of the Korea institute of electronic communication sciences
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    • v.16 no.6
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    • pp.1133-1144
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    • 2021
  • Zero-copy is a technology that is also called no-memory copy, and through its use, context switching between the user space and the kernel space can be reduced to minimize the load on the CPU. However, this technology is only used to transmit small random files, and has not yet been widely used for large file transfers. This paper intends to discuss the practical application of zero-copy in processing large files via a network. To this end, we first developed a small test bed and program that can transmit and store data based on zero-copy. Afterwards, we intend to verify the usefulness of the applied technology in detail through detailed performance evaluation

RAN-aCGH: R GUI Tools for Analysis and Visualization of an Array-CGH Experiment

  • Kim, Sang-Cheol;Kim, Byung-Soo
    • Genomics & Informatics
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    • v.5 no.3
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    • pp.137-139
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    • 2007
  • RAN-aCGH is an R GUI tool for the analysis and visualization of array comparative genomic hybridization (array-CGH) experiments. The tool consists of data-loading, preprocessing for missing data, several methods for statistical identification of DNA copy number aberration, and visualization of the copy number change. RAN-aCGH requires a single input format, provides various visualizations, and allows the addition of a new statistical method, all in a user-friendly graphic user interface (GUI).

A Penalized Spline Based Method for Detecting the DNA Copy Number Alteration in an Array-CGH Experiment

  • Kim, Byung-Soo;Kim, Sang-Cheol
    • The Korean Journal of Applied Statistics
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    • v.22 no.1
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    • pp.115-127
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    • 2009
  • The purpose of statistical analyses of array-CGH experiment data is to divide the whole genome into regions of equal copy number, to quantify the copy number in each region and finally to evaluate its significance of being different from two. Several statistical procedures have been proposed which include the circular binary segmentation, and a Gaussian based local regression for detecting break points (GLAD) by estimating a piecewise constant function. We propose in this note a penalized spline regression and its simultaneous confidence band(SCB) approach to evaluate the statistical significance of regions of genetic gain/loss. The region of which the simultaneous confidence band stays above 0 or below 0 can be considered as a region of genetic gain or loss. We compare the performance of the SCB procedure with GLAD and hidden Markov model approaches through a simulation study in which the data were generated from AR(1) and AR(2) models to reflect spatial dependence of the array-CGH data in addition to the independence model. We found that the SCB method is more sensitive in detecting the low level copy number alterations.

CGHscape: A Software Framework for the Detection and Visualization of Copy Number Alterations

  • Jeong, Yong-Bok;Kim, Tae-Min;Chung, Yeun-Jun
    • Genomics & Informatics
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    • v.6 no.3
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    • pp.126-129
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    • 2008
  • The robust identification and comprehensive profiling of copy number alterations (CNAs) is highly challenging. The amount of data obtained from high-throughput technologies such as array-based comparative genomic hybridization is often too large and it is required to develop a comprehensive and versatile tool for the detection and visualization of CNAs in a genome-wide scale. With this respective, we introduce a software framework, CGHscape that was originally developed to explore the CNAs for the study of copy number variation (CNV) or tumor biology. As a standalone program, CGHscape can be easily installed and run in Microsoft Windows platform. With a user-friendly interface, CGHscape provides a method for data smoothing to cope with the intrinsic noise of array data and CNA detection based on SW-ARRAY algorithm. The analysis results can be demonstrated as log2 plots for individual chromosomes or genomic distribution of identified CNAs. With extended applicability, CGHscape can be used for the initial screening and visualization of CNAs facilitating the cataloguing and characterizing chromosomal alterations of a cohort of samples.

Performance Improvement for PVM by Zero-copy Mechanism (Zero-copy 기술을 이용한 PVM의 성능 개선)

  • 임성택;심재홍;최경희;정기현;김재훈;문성근
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.25 no.5B
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    • pp.899-912
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    • 2000
  • PVM provides users with a single image of high performance parallel computing machine by collecting machines distributed over a network. Low communication overhead is essential to effectively run applications on PVM based platforms. In the original PVM, three times of memory copies are required for a PVM task to send a message to a remote task, which results in performance degradation. We propose a zero-copy model using global shared memory that can be accessed by PVM tasks, PVM daemon, and network interface card(NIC). In the scheme, a task packs data into global shared memory, and notify daemon that the data is ready to be sent, then daemon routes the data to a remote task to which it is sent with no virtual data copy overhead. Experimental result reveals that the message round trip time between two machines is reduced significantly in the proposed zero-copy scheme.

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Implementation of Memory Copy Reduction Scheme for Networked Multimedia Service in Linux (리눅스 커널에서 네트워크 멀티미디어 서비스를 위한 메모리 복사 감소 기법 구현)

  • Kim, Jeong-Won
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.28 no.2B
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    • pp.129-137
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    • 2003
  • Multimedia streams, like MPEG continuously retrieve multimedia data because of their incessant playback. While these streams need an efficient support of kernel, the current buffer cache mechanism of Linux kernel such as Unix operating system was designed apt for small files, which is aperiodically requested as well as time uncritical. But, in case of continuous media, the CPU must enormously copy memory from kernel address space to user address space. This must lead to a large CPU overhead. This overhead both degrades system throughput and cannot guarantee QOS. In this paper, we have designed and implemented two memory copy reduction schemes in Linux kernel, direct I/O and one copy. The direct I/O skips the buffer cache layer of Linux kernel and results in dramatic reduction of CPU memory copy overhead. And, the one copy provides a fast disk-to-network data path without copying to user address space. The experimental results show considerable reduction of CPU overhead and throughput improvements.

A Study on the Masking Data in All-Projection Method for Transparent Copy (All-Projection Method에 있어서 Masking Data에 관한 연구)

  • ChulWhoiKoo
    • Journal of the Korean Graphic Arts Communication Society
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    • v.5 no.1
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    • pp.25-32
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    • 1987
  • Following results about Y, M, C mask are obtained by the Indirect-Screen Color Separation Method. We mark use of experimental system which are in use for the student education. In the All-Projection Method of transparency Copy, the results are summerized as follows; (omitted)

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Implementation of Memory Copy Reduction Scheme for Multimedia Service in Embedded Linux Kernel (내장형 리눅스 커널에서 멀티미디어 서비스를 위한 메모리 복사 감소 기법의 구현)

  • Kim, Jeong-Won
    • Journal of Korea Multimedia Society
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    • v.7 no.8
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    • pp.1058-1065
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    • 2004
  • Embedded system is widely used in various applications from simple monitor to a set-top box with CPU, memory and hard disk drives. Specially, embedded OS is ported in moveable or small machinery since it ordinarily transmits multimedia data. In this paper, we propose Null copy scheme on the embedded linux system for multimedia service, which can reduce memory copy overhead from user address space to kernel one, and vice versa. Since embedded system for networked multimedia service has low level computing power as well as memory, the Null copy scheme can provide more improved QoS. Our image transmission experiment results on embedded linux target board(CPU utilization an Deadline miss rates) installed a web camera have shown that the proposed scheme can increase fast response and lower CPU overhead.

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Study of Zero-copy Mechanism in TCP/IP (TCP/IP 에서의 Zero-copy 매커니즘 연구)

  • Chae, Byoung soo;Tcha, Seung Ju
    • The Journal of Korea Institute of Information, Electronics, and Communication Technology
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    • v.1 no.2
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    • pp.131-136
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    • 2008
  • From the reciprocal connection by this Internet network researchs about the efficiency improvement of the whole system is accomplished with the method which reduces delays in message transmission. From here, we will do a comparative study between the user data program protocol (UDP) and the zero copy which does not use the buffer cache to fine out the valid method to improve the efficiency. In this thesis, I will change the message copy from execution process of the buffer cache of the TCP/IP on Unix OS with process on Linux OS. The object of conversion is to show you that the zero copy which doesn't use the buffer cache from transfer control class improves the communication efficiency.

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