• Genomics & Informatics
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• 제4권1호
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• pp.40-44
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• 2006

Toxicogenomics combines transcriptome, proteome and metabolome profiling with conventional toxicology to investigate the interaction between biological molecules and toxicant or environmental stress in disease caution. Toxicogenomics faces the problems of comparison and integration across different sources of data. Cause of unusual characteristics of toxicogenomic data, researcher should be assisted by data analysis and annotation for getting meaningful information. There are already existing repositories which claim to stand for toxicogenomics database. However, those just contain limited abilities for toxicogenomic research. For supporting toxicologist who comes up against toxicogenomic data flood, now we propose novel toxicogenomics knowledgebase system, XPERANTO-TOX. XPERANTO-TOX is an integrated system for toxicogenomic data management and analysis. It is composed of three distinct but closely connected parts. Firstly, Data Storage System is for reposit many kinds of '-omics' data and conventional toxicology data. Secondly, Data Analysis System consists of analytical modules for integrated toxicogenomics data. At last, Data Annotation System is for giving extensive insight of data to researcher.

• Genomics & Informatics
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• 제3권3호
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• pp.94-97
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• 2005

We have built a database server called Patome which contains the annotation information for patented bio-sequences from the Korean Intellectual Property Office (KIPO). The aims of the Patome are to annotate Korean patent bio-sequences and to provide information on patent relationship of public database entries. The patent sequences were annotated with Reference Sequence (RefSeq) or NCBI's nr database. The raw patent data and the annotated data were stored in the database. Annotation information can be used to determine whether a particular RefSeq ID or NCBI's nr ID is related to Korean patent. Patome infrastructure consists of three components­the database itself, a sequence data loader, and an online database query interface. The database can be queried using submission number, organism, title, applicant name, or accession number. Patome can be accessed at http://www.patome.net. The information will be updated every two months.

• 한국컴퓨터정보학회논문지
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• 제5권3호
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• pp.99-105
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• 2000

비디오는 broadcasting, 교육, 출판과 군사 등 다양한 응용들과 함께 멀티미디어 컴퓨팅과 통신 환경의 중요한 요소가 되었다. 멀티미디어 데이터 검색을 위한 효과적인 방법의 필요성은 대용량의 멀티미디어 응용들에서 날로 증가하고 있다. 따라서, 비디오 데이터의 검색과 표현은 비디오 데이터베이스에서 주요 연구 이슈 중에 하나가 되었다. 비디오 데이터의 표현 방법으로 주로 2가지 접근 방법이 있다: (1) 내용 기반 비디오 검색 과 (2) 주석 기반 비디오 검색. 이 논문은 의미 기반 주석을 이용한 비디오 검색 시스템을 설계하고 구현한다.

• 대한임베디드공학회논문지
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• 제18권6호
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• pp.267-275
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• 2023

This paper presents the development of specialized software for annotating volume-of-interest on ¹⁸F-FDG PET/CT images with the goal of facilitating the studies and diagnosis of head and neck cancer (HNC). To achieve an efficient annotation process, we employed the SE-Norm-Residual Layer-based U-Net model. This model exhibited outstanding proficiency to segment cancerous regions within ¹⁸F-FDG PET/CT scans of HNC cases. Manual annotation function was also integrated, allowing researchers and clinicians to validate and refine annotations based on dataset characteristics. Workspace has a display with fusion of both PET and CT images, providing enhance user convenience through simultaneous visualization. The performance of deeplearning model was validated using a Hecktor 2021 dataset, and subsequently developed semi-automatic annotation functionalities. We began by performing image preprocessing including resampling, normalization, and co-registration, followed by an evaluation of the deep learning model performance. This model was integrated into the software, serving as an initial automatic segmentation step. Users can manually refine pre-segmented regions to correct false positives and false negatives. Annotation images are subsequently saved along with their corresponding ¹⁸F-FDG PET/CT fusion images, enabling their application across various domains. In this study, we developed a semi-automatic annotation software designed for efficiently generating annotated lesion images, with applications in HNC research and diagnosis. The findings indicated that this software surpasses conventional tools, particularly in the context of HNC-specific annotation with ¹⁸F-FDG PET/CT data. Consequently, developed software offers a robust solution for producing annotated datasets, driving advances in the studies and diagnosis of HNC.

• 한국방송∙미디어공학회:학술대회논문집
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• 한국방송∙미디어공학회 2019년도 추계학술대회
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• pp.69-70
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• 2019

본 논문에서는 토지 정보를 분류하는 연구를 수행하기 위한 이미지 데이터 셋을 개발하는데 필요한 반자동 annotation 도구를 제안한다. 논문에서 제안하는 도구는 합성개구레이더 영상을 입력으로 하고, 물/경작지/숲/건물을 구분하는 시스템을 개발하기 위해서 만들어진 것이나, 다른 목적을 가지는 토지 관련 이미지 분석 시스템의 개발에 사용될 수 있다. 제안하는 도구는 합성개구레이더 영상이 GPS 정보와 같이 입력되었을 때, GPS 정보에 기반하여 토지지목정보를 불러오고, 이를 재정리하여 1차 레이블링 결과를 자동적으로 생성한다. 국가에서 관리하는 토지지목정보는 개발하고자 하는 시스템의 분류 기준에 많은 부분 도움이 되긴 하지만, 일부분 차이점이 있기 때문에 이를 다시 수동으로 수정하는 도구을 동작하여 annotation이 완료된 이미지 데이터를 구축한다.

• 한국언어정보학회:학술대회논문집
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• 한국언어정보학회 2002년도 Language, Information, and Computation Proceedings of The 16th Pacific Asia Conference
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• pp.1-1
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• 2002

This talk provides an overview of current work in my research group on the syntactic annotation of the T bingen corpus of spoken German and of the German Reference Corpus (Deutsches Referenzkorpus: DEREKO) of written texts. Morpho-syntactic and syntactic annotation as well as annotation of function-argument structure for these corpora is performed automatically by a hybrid architecture that combines robust symbolic parsing with finite-state methods ("chunk parsing" in the sense Abney) with memory-based parsing (in the sense of Daelemans). The resulting robust annotations can be used by theoretical linguists, who lire interested in large-scale, empirical data, and by computational linguists, who are in need of training material for a wide range of language technology applications. To aid retrieval of annotated trees from the treebank, a query tool VIQTORYA with a graphical user interface and a logic-based query language has been developed. VIQTORYA allows users to query the treebanks for linguistic structures at the word level, at the level of individual phrases, and at the clausal level.

• 한국전자통신학회논문지
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• 제9권7호
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• pp.739-745
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• 2014

지능형CCTV시스템 성능평가를 위한 영상취득 및 영상DB 구축 그리고 평가방안을 제시한다. 영상취득은 각 시나리오에 대하여 원거리, 중거리, 근거리 영역을 설정하여 취득하였다. 영상DB에는 영상녹화정보, 검출영역, 실측경보를 XML형식으로 기록한다. 본 논문에서는 영상DB 제작을 위한 효율적인 실측정보 기록을 위한 영상 주석도구를 제안한다. 영상 주석도구는 특정 영상에 대하여 실측정보를 기록하고 지능형CCTV시스템의 출력경보와 비교하여 검출 성능을 평가하는 기능을 포함한다.

• 한국언어정보학회:학술대회논문집
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• 한국언어정보학회 2007년도 정기학술대회
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• pp.450-458
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• 2007

Tombstone inscriptions represent a linguistic genre which yields insights in culture and language. Creating corpora from tombstones is thus a complementary approach for the study of languages and cultures. For the annotation of tombstone corpora, we propose TSML, the Tombstone-Markup-Language, developed during the massive annotation of Taiwanese tombstones and a number of tombstones from China, Indonesia and Europe. We discuss our conceptual framework in the annotation of tombstones and derive successively and present preliminary research data to show how the usefulness of the annotations. Finally, we will encourage researchers to participate in the specification of TSML to obtain soon an annotation language for annotations across cultures and languages.

• 한국의류산업학회지
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• 제17권5호
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• pp.731-740
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• 2015

Mobile (smartphone) search engine marketing is increasingly important. Accordingly, the development of visual apparel search technology to obtain easier and faster access to visual information in the apparel field is urgently needed. This study helps establish a proper classifying system for an apparel search after an analysis of search techniques for apparel search applications and existing domestic and overseas apparel sites. An annotation technique is developed in accordance with visual attributes and apparel categories based on collected data obtained by web crawling and apparel images collecting. The categorical composition of apparel is divided into wearing, image and style. The web evaluation site traces the correlations of the apparel category and apparel factors as dependent upon visual attributes. An appraisal team of 10 individuals evaluated 2860 pieces of merchandise images. Data analysis consisted of correlations between apparel, sleeve length and apparel category (based on an average analysis), and correlation between fastener and apparel category (based on an average analysis). The study results can be considered as an epoch-making mobile apparel search system that can contribute to enhancing consumer convenience since it enables an effective search of type, price, distributor, and apparel image by a mobile photographing of the wearing state.

• Genomics & Informatics
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• 제19권3호
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• pp.23.1-23.7
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• 2021

Currently, coronavirus disease 2019 (COVID-19) literature has been increasing dramatically, and the increased text amount make it possible to perform large scale text mining and knowledge discovery. Therefore, curation of these texts becomes a crucial issue for Bio-medical Natural Language Processing (BioNLP) community, so as to retrieve the important information about the mechanism of COVID-19. PubAnnotation is an aligned annotation system which provides an efficient platform for biological curators to upload their annotations or merge other external annotations. Inspired by the integration among multiple useful COVID-19 annotations, we merged three annotations resources to LitCovid data set, and constructed a cross-annotated corpus, LitCovid-AGAC. This corpus consists of 12 labels including Mutation, Species, Gene, Disease from PubTator, GO, CHEBI from OGER, Var, MPA, CPA, NegReg, PosReg, Reg from AGAC, upon 50,018 COVID-19 abstracts in LitCovid. Contain sufficient abundant information being possible to unveil the hidden knowledge in the pathological mechanism of COVID-19.