• 약학회지
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• 제53권4호
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• pp.228-234
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• 2009

Topoisomerase I (Topo I) participates in the DNA replication, transcription, and repair. Binding of Topo I inhibitor to the Topo I-DNA cleavage complex forms stabilized ternary complex which blocks DNA religation and ultimately causes cell death. Camptothecin (CPT) and its derivatives have been among the most effective anticancer drugs by inhibition of topo I. However, efforts to synthesize non-CPT drugs have been actively going on because the CPT derivatives have several limitations such as poor solubility, short half-life, and side effects. As an indenoisoquinoline, NSC314622 is not as potent as CPT, but its chemical stability and slower reversibility of the cleavage complex made it a good lead compound. Recently, a series of indenoisoquinoline analogues were synthesized with substituted dimethoxy or methylenedioxy on the aromatic ring and alkylamino on the lactam nitrogen. Some of them showed quite good Topo I inhibitory activity. Using the computer docking program, Surflex-Dock, indenoisoquinoline analogues were docked into the human Topo I-DNA cleavable complex. The docking results showed that the compounds with activity better than NSC314622 intercalated between the -1 and +1 base pairs at the cleavage site, but those with little or no activities did not appear to intercalate. These results could be useful to design new Topo I inhibitors improved than CPT.

• 한국동물학회지
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• 제39권4호
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• pp.393-399
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• 1996

전사개시전 복합체(preinitiation complex)에서 단백질간의 상호작용을 연구하시 위해 zero-Iength croessinking방법을 이용하였다. DNA template가 결합한 금속 지지체를 이용하여 in vitro에서 전사개시전 복합체를 형성시키고, 이렇게 만든 복합체를 1-ethyl-3-(3-dimethylaminopropyl) carbodlimide(EDC)로 croessinking시켰다. $\beta$-mercaptoethanol를 첨가하여 croessinking반응을 멈추게 한 다음, EDC로부터 전사개시전 복합체를 분리하였다. TBF,TFIIB,GAL4-AH등으로 구성된 전사개시전 복합체에 이러한 방법을 적용함으로써 TBF가 GAL4-AH,TFIIB와 각각 직접적으로 결합하고 있음을 규명하였다. 반면에 GAL4-AH와 TFIIB가 croessinking된 산물은 확인할 수 없었다. 이러한 결과들은 GAL4-AH,TFIIB,TBP,DNA로 구성된 전사개시전 복합체에서 GAL4-AH는 TFIIB와 안정적인 결합을 하고 있지 않음을 암시한다.

• 한국식품과학회지
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• 제25권1호
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• pp.46-51
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• 1993

본 연구는 2가철-아스코르빈산착체(Fe-Asc)에 의한 파아지 불활화에 있어서 Fe-Asc의 작용부위에 관해 연구하여 다음과 같은 결과를 얻었다. Fe-Asc의 단백질에 대한 작용에 관하여 우혈청알부민과 J1파아지의 구조단백질을 사용하여 검토한 결과 Fe-Asc의 처리구와 미처리구에 있어서 SDS-폴리아크릴아미드 겔 전기영동패턴, 아미노산 조성 및 자외선 스펙트럼에 변화는 보이지 않았다. 이에 대하여 Fe-Asc를 pUC18 DNA, M13mp8, ${\lambda}$ DNA 및 J1 파아지의 DNA에 작용시키면 아가로오스겔 전기영동패턴에 변화가 보여 사슬절단이 확인되었다. pUC18 DNA는 Fe-Asc와 반응시 먼저 수퍼코일형의 두가닥사슬 DNA의 한쪽 가닥에 절단이 일어나 개환형으로 되고 잇따라 두 가닥 사슬절단이 일어나 선형으로 되어 저분자화하는 것이 확인되었다. 이상의 결과로부터 Fe-Asc에 의한 파아지 불활화는 파아지 DNA의 손상에 기인한다고 생각된다.

• BMB Reports
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• 제28권5호
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• pp.464-470
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• 1995

Quinolone antibiotics are DNA gyrase inhibitors, but their bactericidal action seems to involve more than the inhibition of DNA gyrase activity. Hence, the potentially crucial factors among possible mechanisms of quinolone action; cleavable complex formation, inhibition of DNA synthesis, and induction of SOS response were investigated. These parameters were measured in an Escherichia coli strain exposed to quinolones in the logarithmic growth phase, and correlated with the bactericidal activity of quinolones. Cleavable complex formation proved to be the factor most related to bactericidal action. Inhibition of DNA synthesis was substantially correlated with bactericidal activity, but induction of SOS response was least correlated with bactericidal activity. Therefore, it was concluded that quinolones exert bactericidal action primarily through cleavable complex formation, and subsequent unknown cellular processes together with inhibition of DNA synthesis contribute to the bactericidal activity of quinolones.

• Journal of Ecology and Environment
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• 제34권3호
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• pp.323-331
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• 2011

Biodiversity and the community composition of micro-eukaryotic organisms were investigated in the Upo wetland in Korea using molecular analysis. Molecular identification was performed using cytochrome oxidase I (COI) and small subunit ribosomal DNA (SSU rDNA). The genomic DNA was isolated directly from soil samples. The COI and SSU rDNA regions were amplified using universal primers and then sequenced after cloning. In a similarity search of the obtained sequences with BLAST in the Genbank database, the closely related sequences from NCBI were used to identify the amplified sequences. A total of six eukaryotic groups (Annelida, Arthropoda, Rotifera, Chlorophyta, Bacillariophyta, and Stramenopiles) with COI and six groups (Annelida, Arthropoda, Rotifera, Alveolata, Fungi, and Apicomplexa) with SSU rDNA genes were determined in the Upo wetland. Among 38 taxa in 20 genera, which are closely related to the amplified sequences, 10 genera (50%) were newly reported in Korea and five genera (25%) were shown to be distributed in the Upo wetland. This approach is applicable to the development of an efficient method for monitoring biodiversity without traditional taxonomic processes and is expected to produce more accurate results in depositing molecular barcode data in the near future.

• Asian Pacific Journal of Cancer Prevention
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• 제16권8호
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• pp.3085-3090
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• 2015

The telomeric end structures of the DNA are known to contain tandem repeats of TTAGGG sequence bound with specialised protein complex called the "shelterin complex". It comprises six proteins, namely TRF1, TRF2, TIN2, POT1, TPP1 and RAP1. All of these assemble together to form a complex with double strand and single strand DNA repeats at the telomere. Such an association contributes to telomere stability and its protection from undesirable DNA damage control-specific responses. However, any alteration in the structure and function of any of these proteins may lead to undesirable DNA damage responses and thus cellular senescence and death. In our review, we throw light on how mutations in the proteins belonging to the shelterin complex may lead to various malfunctions and ultimately have a role in tumorigenesis and cancer progression.

• 대한의생명과학회지
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• 제10권3호
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• pp.187-194
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• 2004

A short peptide corresponding to the nuclear localization signal (NLS) of human immunodeficiency virus (HIV)-l Tat protein, Arg-Lys-Lys-Arg-Arg-Gln-Arg-Arg-Arg, was employed to improve the efficiency of cellular uptake of nucleic acids. The peptide was first mixed with a reporter plasmid and then with cationic liposomes to form a tripartite complex of DNA/peptide/liposomes (DPL). Transfection efficiency of the DPL complex was compared with that of the conventional DNA/liposomes (DL) complex. When the DPL complex was formed with various cationic liposomes, DOTAP/DOPE (DP) liposome exhibited superior transfection efficiency to other liposomes tested in vitro. With the inclusion of the peptide, the DPL complex showed much enhanced transfection in various cancer cell lines. Particularly, transfection of the DPL complex in serum increased cellular uptake of a transgene up to 2 fold when compared with that in a serum free condition. Further, when the DPL complex was infused through the ureteric route of a rat, transfection efficiency was shown to be better in reporter gene expression than that obtained with the DL complex. This study shows that the DPL complex that is easy to formulate can be employed for much enhanced cellular uptake of a trans gene.

• 공업화학
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• 제26권4호
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• pp.515-519
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• 2015

DNA템플릿을 이용한 금속 나노입자 합성을 위하여 먼저 DNA와 Gold(III) chloride ($HAuCl_4{\cdot}3H_2O$)의 복합체를 합성하고 UV-Vis spectroscopy 등으로 확인하였고 scanning electron microscopy (SEM)에 의해 그들의 모폴로지를 조사하였다. 합성된 복합체에 hydrazine ($N_2H_4$)과 sodium borohydride ($NaBH_4$)와 같은 환원제를 도입하여 화학적 환원을 유도함으로써 DNA 매트릭스에서의 금 나노입자를 제조하였다. 환원제의 종류와 농도에 따른 금 나노입자 형성에 미치는 영향을 비교 조사하였다. 환원제로 hydrazine ($N_2H_4$)을 사용한 경우 DNA-Au(III) complex의 환원에 보다 효과적인 결과를 보였다. 합성된 DNA-mediated gold nanoparticle에 대하여 SEM, particle size analyzer (PSA), transmission electron microscopy(TEM)를 이용하여 특성조사를 하였다. 수 nm의 작은 입자들이 응집되면서 대략 55~80 nm의 크기를 갖는 금 나노입자의 클러스터를 형성하였고 이들은 DNA 매트릭스에서 확인되었다.

• 생명과학회지
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• 제10권6호
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• pp.621-629
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• 2000

Camptothecin (CPT) is an antitumor alkaloid that has been isolated from the Chinese tree, Camptotheca acuminata. The cytotoxicity of CPT has been correlated to its inhibition of DNA topoisomerase (Topo) I by stabilizing drug-enzyme-DNA “cleavable complex" resulting in DNA single-strand breaks and DNA-protein crosslinks. This studies were designed to elucidate whether CPT regulates Topo I mediated by CPT in DNAs containing c-myc protooncogene. We have conducted experiments on Topo I purification, pUC-MYC I cloning and Topo I assay using electrophoresis, quantitative RT-PCR and Northern blotting techniques. CPT ingibited the relaxation activity of Topo I in pUC19 DNA at various concentrations (1-1000 $\mu$M), while it enhanced the cleavage of Topo I in the pUC-MYC I by forming a cleavable complex at relatively high concentrations (100-1000 $\mu$M). In HL-60 cells treated with CPT, the expression of c-myc gene was decreased over that in the control group with no changes in the expression of Topo I mRNA. Our results suggest that Topo I is the target of CPT cytotoxicity but it does not affect Topo I extression, and the suppression of c-myc mRNA expression by CPT is due to c-myc damage resulted from formation of a cleavable complex with CPT. CPT.

• BMB Reports
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• 제52권10호
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• pp.589-594
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• 2019

Single-molecule techniques have been used successfully to visualize real-time enzymatic activities, revealing transient complex properties and heterogeneity of various biological events. Especially, conventional force spectroscopy including optical tweezers and magnetic tweezers has been widely used to monitor change in DNA length by enzymes with high spatiotemporal resolutions of ~nanometers and ~milliseconds. However, DNA metabolism results from coordination of a number of components during the processes, requiring efficient monitoring of a complex of proteins catalyzing DNA substrates. In this min-review, we will introduce a simple and multiplexed single-molecule assay to detect DNA substrates catalyzed by enzymes with high-throughput data collection. We conclude with a perspective of possible directions that enhance capability of the assay to reveal complex biological events with higher resolution.