• Title/Summary/Keyword: DNA Barcode

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First Report of Five Tobrilus Species (Nematoda: Triplonchida) from Korea

  • Kim, Jiyeon;Kim, Taeho;Yu, Jeong-Nam;Park, Joong-Ki
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.3
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    • pp.240-250
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    • 2020
  • Member of the genus Tobrilus Andrássy, 1959, which belongs to Tobrilidae Filipjev, 1918, are known as free-living nematodes in freshwater habitat. This genus was previously unknown from Korea. Five Tobrilus species are here reported for the first time from Korea: Tobrilus aberrans (Schneider, 1925), Tobrilus diversipapillatus (Daday, 1905), Tobrilus gracilis (Bastian, 1865), Tobrilus longus (Leidy, 1851), and Tobrilus wesenbergi (Micoletzky, 1925). Specimens were collected from sediments of the Nakdong River in Korea. Morphological characters and measurements of the specimens generally agree with the original descriptions of Tobrilus species, except for some differences that can be attributed to intraspecific variation among populations(e.g., nerve ring position [% pharynx] and reproductive length). Each species can be distinguished from other members of the genus by specific characters (e.g., cephalic setae length and position, buccal cavity and pocket shape, vulva position, degree of development of reproductive system, and tail length and shape). Here, five species in the genus Tobrilus are fully redescribed and illustrated using optical microscopy images. DNA barcode sequence information (the D2-D3 region of 28S rDNA) is also provided for molecular species identification.

First Report of Two Plectus Species (Nematoda: Plectida) from Korea

  • Kim, Jiyeon;Yu, Jeong-Nam;Kim, Taeho
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.3
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    • pp.251-257
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    • 2020
  • The genus Plectus Bastian, 1865 represents a group of free-living freshwater nematodes belonging to the family Plectidae Örley, 1880. However, only one species has been reported thus far from Korea. Plectus aquatilis Andrássy, 1985 and Plectus cirratus Bastian, 1865 are reported for the first time from Korea, from sediments collected from the Nakdong River. Plectus aquatilis is distinguished from other Plectus species by its three longitudinal alae in the lateral field, thin and directed cephalic setae, continuous lip region (head not set-off), and rectangular shaped tail. Plectus cirratus is distinguished from other Plectus species by its large body, two longitudinal alae in the lateral field, larger stoma, and longer tail. Morphological characters and measurements of the specimens generally agree with the original descriptions of Plectus species. Here, the morphological characters (detailed morphometrics) of two species in the genus Plectus are fully redescribed and illustrated using optical microscopy. DNA barcode sequence information from the 18S rDNA gene is also provided for molecular species identification and compared with sequences from other Plectus species available on GenBank.

Description of Microscopic Morphology of Leptochiton hakodatensis (Mollusca: Polyplacophora)

  • Park, Jina;Lee, Yucheol;Kim, Yukyung;Park, Joong-Ki
    • Animal Systematics, Evolution and Diversity
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    • v.38 no.1
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    • pp.14-19
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    • 2022
  • Leptochiton Gray, 1847 is one of the most ancient chiton groups which includes more than 130 species that occur in cold and deep waters worldwide. Due to their small-sized body, they are often confused as juveniles of other chiton species. Moreover, lack of morphological information makes species identification of this group very challenging. To date, only two Leptochiton species(L. fuliginatus and L. rugatus) have been reported from Korean waters. In this study, we found L. hakodatensis(Thiele, 1909) for the first time in Korea and described microscopic morphological characters of valves (tegmentum sculpture), girdle scale, and radula using a scanning electron microscopy (SEM). Leptochiton hakodatensis is morphologically similar to L. fuliginatus and L. rugatus, but differently characterized by having dorso-ventrally rounded (not carinated) intermediate valves, girdle (perinotum) scales sculptured with 4-7 longitudinal ribs, and bicuspid major lateral teeth of radula. In addition to morphological examination, we determined the partial mitochondrial cytochrome c oxidase subunit I(cox1) as a DNA barcode sequence information. This is the first report that describes microscopic characters (tegmentum of valves, girdle structure, and radula) of L. hakodatensis using a SEM. This study provides a morphological basis for describing Leptochiton species and discovery of a "hidden" species of this genus.

A Newly Recognized Desmometopa Loew, 1866 (Diptera: Milichiidae), A Commensalistic Dipteran Genus, in South Korea (한국의 미기록속 이마줄불청객파리속(신칭)(파리목: 불청객파리과)에 대한 보고)

  • Seung-Su Euo;Jeong-Hwan Choi;Il-Kwon Kim;A Young Kim
    • Korean journal of applied entomology
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    • v.62 no.4
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    • pp.325-331
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    • 2023
  • Desmometopa Loew, 1866 is newly recognized in the Korean Peninsula, based on Desmometopa microps Lamb, 1914 that is new to Korean insect fauna. The species is known to have commensalistic habits with predacious insects and spiders. Diagnosis, description, images and DNA barcode sequences are provided, based on the obtained adult specimens.

Are Cryptic Species Real?

  • Crous, Pedro W.
    • 한국균학회소식:학술대회논문집
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    • 2014.10a
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    • pp.29-29
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    • 2014
  • Since Darwin and Wallace introduced the concept on the evolution of species, scientists have been furiously debating what species are, and how to define them. This basic yet intriguing question has bothered us ever since, as communicating to fellow biologists about fungal species is the very cornerstone of mycology. For the species presently known, this has largely been accomplished via Latin binomials linked to morphology in the absence of DNA barcodes. In recent years mycologists have embraced the ribosomal ITS as official barcode region for Fungi, and this locus is also mainly used in environmental pyrosequencing studies. Furthermore, DNA data can now also be used to describe sterile species in the absence or lack of distinct morphological structures. Recent developments such as the registration of names in MycoBank, and linking the phenotype to the genotype, have significantly changed the face of fungal systematics. By employing the Consolidated Species Concept, incorporating genealogical concordance, ecology and morphology, robust species recognition is now possible. Several international initiatives have since built on these developments, such as the DNA barcoding of holdings of Biological Resource Centres, followed by the Genera of Fungi Project, aiming to recollect, and epitypify all type species of all genera. What these data have revealed, is that most genera are poly- and paraphyletic, and that morphological species normally encompass several genetic entities, which may be cryptic species. Once we provide a stable genetic backbone capturing our existing knowledge of the past 250 years, we will be able to accommodate novelties obtained via environmental sequencing platforms. Being able to communicate these species to other biologists in a clear manner that is DNA-based, will enable scientists to elucidate the importance, role and ecological interactions that these fungi have on our planet.

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Genetic Analysis of Medicinal Plants in Adenophorae Radix Using DNA Barcode (DNA바코드를 활용한 사삼(沙蔘)의 종 감별)

  • Kim, Minkyeoung;Lee, Wookyu;Kim, Jaelim;Lee, Kiho;Choi, Yoorae;Kim, Jonghwan;Kang, Ilhyun;Kang, Juhye
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2019.10a
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    • pp.97-97
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    • 2019
  • 사삼(沙蔘, Adenophorae Radix)은 "대한민국약전외한약(생약)규격집(KHP)"에 잔대 Adenophora triphylla var. japonica Hara 또는 사삼(당잔대, A. stricta Miq.)의 뿌리로 수재되어 있으나, 형태학적으로 유사한 제니(모시대, A. remotiflorus Miquel), 층층잔대(윤엽사삼, A. tetraphylla (Thunb.) Fisch), 더덕 Codonopsis lanceolata (Sieb. et Zucc.)과 오 혼용 우려가 있어 이들을 구별하기 위한 종 감별법이 필요하다. 본 연구에서는 '사삼'과 오 혼용 우려가 있는 종들을 구별할 수 있는 유전자 마커 개발을 위하여 DNA 바코드로 활용되고 있는 유전자 부위를 분석하여 ITS (25%), atpB-rbcL (15%), atpF-atpH (14%), rpl16 (13%), trnL-F (10%), matK (9%), rpoC1 (7%)에서 변이율(percent of variable sites)을 확인하였다. 또한, 분석한 유전자 부위 중 종간 차이를 확인하기 용이한 matK 구간을 활용해 기원종인 잔대, 당잔대와 형태적으로 유사하여 오 혼용될 우려가 있는 층층잔대, 모시대 및 더덕을 감별 할 수 있는 유전자 마커를 개발하였다. 본 연구를 통해 얻어진 염기서열과 분자 마커는 '사삼'의 품질관리에 유용하게 활용 가능할 것으로 사료된다.

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New record of two feather mites (Acari: Sarcoptiformes: Astigmata) from Korea

  • Han, Yeong-Deok;Song, Ji-Hun;Min, Gi-Sik
    • Journal of Species Research
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    • v.5 no.3
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    • pp.324-332
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    • 2016
  • Two feather mites, Zachvatkinia larica Mironov, 1989 and Ardeacarus ardeae (Canestrini, 1878) are reported for the first time in Korea. Specimens of Z. larica and A. ardeae were collected from the blacktailed gull Larus crassirostris and little egret Egretta garzetta, respectively. The genera Zachvatkinia Dubinin, 1949 and Ardeacarus Dubinin, 1951 are new to this country. Here, we provided morphological descriptions and illustrations of these two species. Additionally, we provide the partial sequences of the mitochondrial cytochrome c oxidase subunit I (COI) as DNA barcode markers.

First report of the branchiobdellidan Holtodrilus truncatus (Annelida: Clitellata) found on the freshwater atyid shrimp Neocaridina sp. from Korea

  • Ahn, Dong-Ha;Min, Gi-Sik
    • Journal of Species Research
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    • v.5 no.3
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    • pp.459-462
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    • 2016
  • The branchiobdellidan species Holtodrilus truncatus (Liang, 1963) is reported for the first time in Korea. The genus Holtodrilus Gelder and Brinkhurst, 1990 is monotypic within the family Xironodrilidae, and the genus and family of this species are also new to the Korean fauna. The branchiobdellidan specimens were collected from the exoskeletons of the freshwater atyid shrimp, Neocaridina sp., sampled from the 'Andeok Valley', Jeju-do Province, South Korea. Holtodrilus truncatus is characterized by its terete body form, 7/7 dental formula (with a large medial tooth and three pairs of smaller lateral teeth), and no trunk appendages. In addition, we determined a partial sequence of the mitochondrial cytochrome c oxidase subunit 1 (CO1) gene as a DNA barcode marker for H. truncatus. The present study is the first record of the branchiobdellidan occurrence on a non-crayfish host (shrimp) in Korea. To date, seven species (four genera in three families) of branchiobdellidans have been reported in the Korean fauna.

First Discovery of the Lichen-Feeding Moth Bacotia sakabei (Lepidoptera: Psychidae) from Korea

  • Roh, Seung Jin;Byun, Bong-Kyu
    • Animal Systematics, Evolution and Diversity
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    • v.33 no.1
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    • pp.60-64
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    • 2017
  • The family Psychidae is a small group consisting of 241 genera and 1,350 species in the world. The genus Bacotia, belonging to the family Psychidae, what was established by Tutt based on the type species, Fumea sepium Speyer and Speyer, 1846. In this study, we aimed to record lichen-feeding bagworms in Korea. The genus Bacotia Tutt is reported for the first time from Korea with one newly recorded species, Bacotia sakabei Seino, 1981. All available information, including the collecting localities, host plants, illustrations of adults and genitalia are presented. A DNA barcode for precise identification of the species is also described.

New earthworm species from NIBR's Jeju-do biosphere compared to historical and new Japanese types (Oligochaeta: Megadrilacea: Megascolecidae)

  • Blakemore, Robert J.
    • Journal of Species Research
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    • v.1 no.2
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    • pp.133-150
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    • 2012
  • Amynthas tralfamadore sp. nov. is described from the Mt Halla, Jeju Island biosphere exhibition housed at NIBR Incheon. This species' taxonomy is problematical since it is similar to Amynthas masatakae (Beddard, 1892) from Japan, itself previously reported from Korea and at one time associated with Amynthas campestris (Goto & Hatai, 1898) and A. parvicystis (Goto & Hatai, 1899), all three variously implicated in prior A. robustus (Perrier, 1872) along with Amynthas aspergillum (Perrier, 1872). Based on reinspection of the London lectotype of A. masatakae-here designated and sketched for the first time-the current solution is for maintenance of all five taxa separately. A closely-related Japanese species-Metaphire ryunome sp. nov.-is comparable to Korean Metaphire reisuiensis (Kobayashi, 1938) comb. nov. Another specimen was identified as Amynthas micronarius (Goto & Hatai, 1898), a new record for Korea. It matches the newly-designated neotype (Tokyo NMST An446) and an annotated synonymy is provided; however, erstwhile synonyms, Amynthas shimaensis (Goto & Hatai, 1899) and A. yamizoyamensis (Ohfuchi, 1935) combs. novae, are briefly redescribed and provisionally restored to the Japanese list. mtDNA COI-5P barcode analyses support species identifications.