• 제목/요약/키워드: Core Sequence

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Sequence-specific interaction between ABD-B homeodomain and castor gene in Drosophila

  • Kim, Keon-Hee;Yoo, Siuk
    • BMB Reports
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    • 제47권2호
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    • pp.92-97
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    • 2014
  • We have examined the effect of bithorax complex genes on the expression of castor gene. During the embryonic stages 12-15, both Ultrabithorax and abdominal-A regulated the castor gene expression negatively, whereas Abdominal-B showed a positive correlation with the castor gene expression according to real-time PCR. To investigate whether ABD-B protein directly interacts with the castor gene, electrophoretic mobility shift assays were performed using the recombinant ABD-B homeodomain and oligonucleotides, which are located within the region 10 kb upstream of the castor gene. The results show that ABD-B protein directly binds to the castor gene specifically. ABD-B binds more strongly to oligonucleotides containing two 5'-TTAT-3' canonical core motifs than the probe containing the 5'-TTAC-3' motif. In addition, the sequences flanking the core motif are also involved in the protein-DNA interaction. The results demonstrate the importance of HD for direct binding to target sequences to regulate the expression level of the target genes.

Genetically Independent Tetranucleotide to Hexanucleotide Core Motif SSR Markers for Identifying Lentinula edodes Cultivars

  • Saito, Teruaki;Sakuta, Genki;Kobayashi, Hitoshi;Ouchi, Kenji;Inatomi, Satoshi
    • Mycobiology
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    • 제47권4호
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    • pp.466-472
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    • 2019
  • For the purpose of protecting the rights of Lentinula edodes breeders, we developed a new simple sequence repeat (SSR) marker set consisting only of genetically independent tetranucleotide or longer core motifs. Using available genome sequences for five L. edodes strains, we designed primers for 13 SSR markers that amplified polymorphic sequences in 20 L. edodes cultivars. We evaluated the independence of every possible marker pair based on genotype data. Consequently, eight genetically independent markers were selected. The polymorphic information content values of the markers ranged from 0.269 to 0.764, with an average of 0.409. The markers could distinguish among 20 L. edodes cultivars and produced highly repeatable and reproducible results. The markers developed in this study will enable the precise identification of L. edodes cultivars, and may be useful for protecting breeders' rights.

Gene Expression Profiling in Rice Infected with Rice Blast Fungus using SAGE

  • Kim, Sang-Gon;Kim, Sun-Tae;Kim, Sung-Kun;Kang, Kyu-Young
    • The Plant Pathology Journal
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    • 제24권4호
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    • pp.384-391
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    • 2008
  • Rice blast disease, caused by the pathogenic fungus Magnaporthe grisea, is a serious issue in rice (Oryza sativa L.) growing regions of the world. Transcript profiling in rice inoculated with the fungus has been investigated using the transcriptomics technology, serial analysis of gene expression (SAGE). Short sequence tags containing sufficient information which are ten base-pairs representing the unique transcripts were identified by SAGE technology. We identified a total of 910 tag sequences via the GenBank database, and the resulting genes were shown to be up-regulated in all functional categories under the fungal biotic stress. Compared to the compatible interaction, the stress and defense genes in the incompatible interaction appear to be more up-regulated. Particularly, thaumatin-like gene (TLP) was investigated in determining the gene and protein expression level utilizing Northern and Western blotting analyses, resulting in an increase in both the gene and the protein expression level which arose earlier in the incompatible interaction than in the compatible interaction.

코어 물성 변화에 따른 인쇄회로기판의 warpage 개선 (Warpage Improvement of PCB with Material Properties Variation of Core)

  • 윤일성
    • 마이크로전자및패키징학회지
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    • 제13권2호
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    • pp.1-7
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    • 2006
  • 본 논문에서는 솔더 레지스트(solder resist)의 두께와 코어의 물성에 따른 인쇄회로기판의 철의 크기와 형상에 대하여 연구하였다. 인쇄회로기판의 굽힘 변형은 적층되는 재료의 열팽창계수의 차이에 의해 발생한다. 따라서 굽힘 변형의 감소를 위해서는 열팽창계수의 차이가 작은 적층 재료를 사용하는 것이 필요하며, 구조 형상에서도 상면과 하면의 불균일성을 완화시킬 필요가 있다. 또한, 적층 재료에서 코어의 강성을 높여 점의 발생을 억제할 수 있다. 코어를 이루는 복합재료는 적층 순서와 섬유 각에 따른 물성 특성의 방향성에 따라 굽힘과 비틀림이 연성되는 현상을 보이며, 이와 같은 성질을 이용하면 휨을 제어할 수 있다. 본 연구에서는 2층으로 구성된 chip scale package (CSP) 기판의 휨에 대한 연구로, 실험 및 유한 요소해석 툴을 이용하여 개선 결과를 도출하였다.

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Stress-transfer in concrete encased and filled tube square columns employed in top-down construction

  • Kim, Sun-Hee;Yom, Kyong-Soo;Choi, Sung-Mo
    • Steel and Composite Structures
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    • 제22권1호
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    • pp.63-77
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    • 2016
  • Top-down construction is a construction technique in which pit excavation and structure construction are conducted simultaneously. Reducing construction time and minimizing noise and vibration which affect neighboring structures, the technique is widely employed in constructing downtown structures. While H-steel columns have been commonly used as core columns, concrete filled steel tube (CFT) columns are at the center of attention because the latter have less axial directionality and greater cross-sectional efficiency than the former. When compared with circular CFT columns, square CFT columns are more easily connected to the floor structure and the area of percussion rotary drilling (PRD) is smaller. For this reason, square CFT columns are used as core columns of concrete encased and filled square (CET) columns in underground floors. However, studies on the structural behavior and concrete stress transfer of CET columns have not been conducted. Since concrete is cast according to construction sequence, checking the stress of concrete inside the core columns and the stress of covering concrete is essential. This paper presents the results of structural tests and analyses conducted to evaluate the usability and safety of CET columns in top-down construction where CFT columns are used as core columns. Parameters in the tests are loading condition, concrete strength and covering depth. The compressive load capacity and failure behavior of specimens are evaluated. In addition, 2 cases of field application of CET columns in underground floors are analyzed.