• Asian-Australasian Journal of Animal Sciences
• /
• v.30 no.7
• /
• pp.957-966
• /
• 2017

Objective: To understand the dynamic structure, function, and influence on nutrient metabolism in hosts, it was crucial to assess the genetic potential of gut microbial community in yaks of different ages. Methods: The denaturing gradient gel electrophoresis (DGGE) profiles and Illumina-based metagenomic sequencing on colon contents of 15 semi-domestic yaks were investigated. Unweighted pairwise grouping method with mathematical averages (UPGMA) clustering and principal component analysis (PCA) were used to analyze the DGGE fingerprint. The Illumina sequences were assembled, predicted to genes and functionally annotated, and then classified by querying protein sequences of the genes against the Kyoto encyclopedia of genes and genomes (KEGG) database. Results: Metagenomic sequencing showed that more than 85% of ribosomal RNA (rRNA) gene sequences belonged to the phylum Firmicutes and Bacteroidetes, indicating that the family Ruminococcaceae (46.5%), Rikenellaceae (11.3%), Lachnospiraceae (10.0%), and Bacteroidaceae (6.3%) were dominant gut microbes. Over 50% of non-rRNA gene sequences represented the metabolic pathways of amino acids (14.4%), proteins (12.3%), sugars (11.9%), nucleotides (6.8%), lipids (1.7%), xenobiotics (1.4%), coenzymes, and vitamins (3.6%). Gene functional classification showed that most of enzyme-coding genes were related to cellulose digestion and amino acids metabolic pathways. Conclusion: Yaks' age had a substantial effect on gut microbial composition. Comparative metagenomics of gut microbiota in 0.5-, 1.5-, and 2.5-year-old yaks revealed that the abundance of the class Clostridia, Bacteroidia, and Lentisphaeria, as well as the phylum Firmicutes, Bacteroidetes, Lentisphaerae, Tenericutes, and Cyanobacteria, varied more greatly during yaks' growth, especially in young animals (0.5 and 1.5 years old). Gut microbes, including Bacteroides, Clostridium, and Lentisphaeria, make a contribution to the energy metabolism and synthesis of amino acid, which are essential to the normal growth of yaks.

• Korean Journal of Environment and Ecology
• /
• v.29 no.3
• /
• pp.421-430
• /
• 2015

This study was carried out to understand the ecological variations of macrobenthos communities by construction dikes in the subtidal zone of Chonsu Bay. This study analyzed the distribution of benthos, the dominant species, spatial and temporal changes of benthos communities and benthic pollutions in the subtidal zone of Chonsu Bay. A total of 252 species of subtidal macrobenthos with a density of $681ind./m^2$ were studied. In all the seasons, the species diversity was found to be higher near the mouth of the bay. For all the seasons of the year, Lumbrineris japonica was found to be the most dominant species. These dominant species were found to have positive correlations with species diversity and sedimentary parameters such as organic content in sediments. Dominant species of benthos as well as species composition and diversity showed spatial and temporal distribution patterns.Benthic Pollution Index (BPI) values estimated for the stations near the embankment were in the 4~5 levels, which indicates that the organic matter has been polluted. And as for the stations near the mouth of the bay, the BPI values were in the 1~3 levels, which indicates that the organic matter has been relatively less polluted. According to the SAB-curve analysis, the number of transitional point stations became less in the mouth of the bay.

• Korean Journal of Microbiology
• /
• v.33 no.3
• /
• pp.175-180
• /
• 1997

In an artificial pH-gradient hatch culture system, the author analyzed the effects of acidification on the species composition of heterotrophic bacteria. As the result of this study, it was found that the numbers of total bacteria were not affected by acidification and that the population size of heterotrophic bacteria decreased as pH became lower. The heterotrophic bacteria isolated from all of the pH gradient were 12 genera and 22 species. and among them, gram negative and gram positive bacteria were 64% and 36%, respectivcly. As pH decreased, the distribution rate of gram negative bacteria increased while that of gram positive bacteria decreased. Regarding to distrihution rate of genuses in each pH gradient, 13 genuses appeared at pH 7 while only 5 genuses appeared at pH 3. which means that the diversity of genera decrease as pH decreased. As a result of cluster analysis, diversity indices 01 species had ranges from 1.13 to 2.37, and decreased as pH decreased. In order to evaluate the diversity of different size samples, we analyzed the expected number of species appearance according to pH by rarefaction method. The statistical significance of species diversity was verified by the fact that the number decreased at lower pH.

• Microbiology and Biotechnology Letters
• /
• v.45 no.1
• /
• pp.71-80
• /
• 2017

Tea is the most popular beverage in the world. The three main types are green, black, and post-fermented. Post-fermented teas are produced by the microbial fermentation of sun-dried green tea leaves (Camellia sinensis). In this study, the composition of the bacterial communities involved in the production of traditional oriental post-fermented teas (Korean algacha, dancha, and Chinese pu-erh) were investigated using 16S rRNA gene analysis. The dominant microorganisms present in the post-fermented teas included the ${\alpha}$-proteobacteria Rhodobacteraceae and Sphingomonas, and the ${\gamma}$-proteobacteria Pantoea. Cluster analysis confirmed that the microbial populations present in both Korean and Chinese post-fermented teas grouped into the same class. Interestingly, the dominant microorganism present in the Korean post-fermented teas was a bacterium, while for the Chinese post-fermented tea, it was a fungus.

• Journal of the Korean Society for information Management
• /
• v.32 no.4
• /
• pp.107-135
• /
• 2015

The purpose of this study is to investigate and analyze present condition of enactment and enforcement of regulation for reading culture promotion which is a local statute of the autonomous community of Korea to suggest effective improvement methods for operation of ordinance and regulation. In this research, literature review and regulation analysis were conducted and investigated. The results of this study are as follows. 1) There were 77 ordinances of reading related local statutes of 245 metropolitan and primary local authority and 7 regulations. 2) Ordinances and ordinance regulation of the local government and local government of education are being named variously. 3) Composition of ordinances ordinance regulation were not systematic due to diverse contents of ordinance by local government according to the names of ordinance, and they overlapped with similar contents in general. 4) There were 10 ordinances and 2 official orders for the abolished reading related local statutes of the local government until today. This study suggested the following methods to vitalize the reading culture promotion policy. 1) It would be necessary to improve awareness by promoting the reading promotion policy. 2) Optimal name for local statute and ordinance that considered the environment of reading promotion of local statue need to be assigned, and contents of the ordinance regulation related to reading needs to be consistent. 3) Local statutes need to be established by collecting enough opinions of residents or specialists after thoroughly examining problems of the ordinance before abolition.

• Journal of Korean Society of Forest Science
• /
• v.98 no.3
• /
• pp.339-350
• /
• 2009

This study was carried out to investigate distributional condition of rare plants and useful plant resources, and to verify distributional patterns of understory vegetation associated with the upper layer's vegetation structure. Total 59 families, 160 genera, 218 kinds of vascular plants were identified at the study site including 6 rare plants designated by Korea Forest Service (Lloydia triflora Bak., Trillium kamtschaticum Pall., Lilium distichum Nakai, Anemone koraiensis Nakai, Iris odaesanensis Y.N. Lee, Viola diamantica Nakai). Twenty three species of useful plant resources were also identified at the site; 8 of them showed clustered distributions and the others were prone to scatter. Actual vegetation of this study area consisted of one natural community dominated by Quercus mongolica Fisch. and three disturbed communities of Larix kaempferi (Lamb.) Carriere, Abies holophylla Max. and/or a herbaceous vegetation resulting from forest removal and strong wind of mountain top. This classification was strongly supported by cluster analysis based on the surveyed plot data. Distributional patterns of understory vegetation within forest stand were somewhat related to overstory vegetation structure, but showed a different tendency according to site condition, species composition, and competitive pressure among understory vegetation. Therefore, in order to protect the important understory components as forest genetic resources, forest treatments such as density control of overstory should be implanted based on understanding of impact on understory's dynamics and growing condition.

• Journal of Forest and Environmental Science
• /
• v.13 no.1
• /
• pp.28-50
• /
• 1997

This study was carried out in a part of conservative plans recovering natural ecosystem which will be submerged, as Hoengseong dam is being constructed around Hoengseong-Eup and Gabcheon-Myun. The submerged area was divided into 7 small areas to figure out what kinds of species of plants are and will be according to detailed geographic characteristics. In the center of the subdivided areas, Degree of Green Naturality, standing biomass, net 36production per year, and composition of plant species were investigated. The results are as following; 1. The surveyed area was classified into 8 degree by Degree of Green Naturality, and the appeared degree and the rate of occupation were 0(3.1%), 1(5.3%), 2(28.2%), 3(0.1%), 5(0.2%), 7(4.6%), 7(44.7%), and 8(13.8%). 2. Standing biomass was 88,436.3 ton/year and net production per year was 12,960.3 ton/year. 3. The list of vascular plants identified in this study consisted of 86 families, 221 genera, 1 variety, 3 formae and 306 species, totally summiting upto 310 species. 4. The 7 surveyed areas were largely occupied by Pinus community. In addition, there were Quercus mongolica, Quercus dentata, and Quercus acutissima communities.

• Journal of Korean Society of Coastal and Ocean Engineers
• /
• v.28 no.4
• /
• pp.240-249
• /
• 2016

In this study, we investigated wave force distribution at points on a vertical structure of semi-infinite breakwater considering diffraction. Wave forces of monochromatic and random waves on a vertical structure are studied considering diffractions in front and lee side of the breakwater for non-breaking wave condition. We selected width of breakwater are 0 for reference condition. In monochromatic wave case, relative wave force becomes 0 on the head of the breakwater by acting incident wave force and diffracting wave force simultaneously and oscillating patterns of relative wave force occurs based on 1.0 as distance from the head increases. Relative wave force of monochromatic waves decreases as incident wave angle increases. Relative wave force of random waves is defined by using ratio of root mean square and wave force spectrum in this study. The case considering random phase of each wave components are compared to the case which don't consider random phase and both results are almost similar. Relative wave force of random waves is also 0 near the head of the breakwater likewise monochromatic wave. Oscillating pattern of relative wave force of random waves becomes relatively weaker for composition of each wave components as distance from the head increases.

• The Journal of Advanced Prosthodontics
• /
• v.7 no.6
• /
• pp.468-474
• /
• 2015

PURPOSE. The aim of this study was to characterize and compare bacterial diversity on the removable partial denture (RPD) framework over time. MATERIALS AND METHODS. This descriptive pilot study included five women who were rehabilitated with free-end mandibular RPD. The biofilm on T-bar clasps were collected 1 week ($t_1$) and 4 months ($t_2$) after the RPD was inserted ($t_0$). Bacterial 16S rDNA was extracted and PCR amplified. Amplicons were cloned; clones were submitted to cycle sequencing, and sequences were compared with GenBank (98% similarity). RESULTS. A total of 180 sequences with more than 499 bp were obtained. Two phylogenetic trees with 84 ($t_1$) and 96 ($t_2$) clones represented the bacteria biofilm at the RPD. About 93% of the obtained phylotypes fell into 25 known species for $t_1$ and 17 for $t_2$, which were grouped in 5 phyla: Firmicutes ($t_1=82%$; $t_2=60%$), Actinobacteria ($t_1=5%$; $t_2=10%$), Bacteroidetes ($t_1=2%$; $t_2=6%$), Proteobacteria ($t_1=10%$; $t_2=15%$) and Fusobacteria ($t_1=1%$; $t_2=8%$). The libraries also include 3 novel phylotypes for $t_1$ and 11 for $t_2$. Library $t_2$ differs from $t_1$ (P=.004); $t_1$ is a subset of the $t_2$ (P=.052). Periodontal pathogens, such as F. nucleatum, were more prevalent in $t_2$. CONCLUSION. The biofilm composition of the RPD metal clasps changed along time after RPD wearing. The RPD framework may act as a reservoir for potentially pathogenic bacteria and the RPD wearers may benefit from regular follow-up visits and strategies on prosthesis-related oral health instructions.

• Korean Journal of Ecology and Environment
• /
• v.42 no.2
• /
• pp.212-220
• /
• 2009

In this study, we analyzed fish compositions and ecological characteristics such as trophic guilds and tolerance guilds in association with water quality characteristics in Masan Reservoir during November 2008. Total number of species were 12 species (6 families) and the dominant species were Zacco platypus, Hemiculter eigenmanni, and Pseudorasbora parva. We found three Korean endemic species and one exotic species, Carassius cuvieri. According to the analysis of ecological indicator characteristics, relative proportion of tolerant and omnivore species was 98% of the total indicating that probably, the fauna was influenced by physical habitat disturbance and physicochemical degradations. Fish distribution analysis along with littoral zone showed that the most fishes (${\sim}$95%) were observed in the littoral zone where emerged macrophytes were well developed. Also, substrate analysis indicated that the most species were found near silt area (11 species, 91.7%), so that the significant differences were found between the substrate types. Analysis of water quality indicated that concentrations of total phosphorus (TP) and chlorophyll-a (ChI-a) as a lake trophic indicator were judged as eutrophic states, respectively and COD as an indicator of organic matter pollution averaged 10.9 mg $L^{-1}$. Based on the water quality, this system were influenced by the nutrient enrichments and organic matter. The degradations of water quality in Masan Reservoir resulted in trophic compositions of fish (increase of omnivore species) and the dominance of tolerant fish. This Monitoring data may contribute changes of fish fauna and compositions in relation to habitat modifications and chemical water quality degradations in the future.