• Title/Summary/Keyword: Combined sequence

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Dynamic Cardiac Magnetic Resonance Fingerprinting During Vasoactive Breathing Maneuvers: First Results

  • Luuk H.G.A. Hopman;Elizabeth Hillier;Yuchi Liu;Jesse Hamilton;Kady Fischer;Nicole Seiberlich;Matthias G. Friedrich
    • Journal of Cardiovascular Imaging
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    • v.31 no.2
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    • pp.71-82
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    • 2023
  • BACKGROUND: Cardiac magnetic resonance fingerprinting (cMRF) enables simultaneous mapping of myocardial T1 and T2 with very short acquisition times. Breathing maneuvers have been utilized as a vasoactive stress test to dynamically characterize myocardial tissue in vivo. We tested the feasibility of sequential, rapid cMRF acquisitions during breathing maneuvers to quantify myocardial T1 and T2 changes. METHODS: We measured T1 and T2 values using conventional T1 and T2-mapping techniques (modified look locker inversion [MOLLI] and T2-prepared balanced-steady state free precession), and a 15 heartbeat (15-hb) and rapid 5-hb cMRF sequence in a phantom and in 9 healthy volunteers. The cMRF5-hb sequence was also used to dynamically assess T1 and T2 changes over the course of a vasoactive combined breathing maneuver. RESULTS: In healthy volunteers, the mean myocardial T1 of the different mapping methodologies were: MOLLI 1,224 ± 81 ms, cMRF15-hb 1,359 ± 97 ms, and cMRF5-hb 1,357 ± 76 ms. The mean myocardial T2 measured with the conventional mapping technique was 41.7 ± 6.7 ms, while for cMRF15-hb 29.6 ± 5.8 ms and cMRF5-hb 30.5 ± 5.8 ms. T2 was reduced with vasoconstriction (post-hyperventilation compared to a baseline resting state) (30.15 ± 1.53 ms vs. 27.99 ± 2.07 ms, p = 0.02), while T1 did not change with hyperventilation. During the vasodilatory breath-hold, no significant change of myocardial T1 and T2 was observed. CONCLUSIONS: cMRF5-hb enables simultaneous mapping of myocardial T1 and T2, and may be used to track dynamic changes of myocardial T1 and T2 during vasoactive combined breathing maneuvers.

A Study on Stochastic Estimation of Monthly Runoff by Multiple Regression Analysis (다중회귀분석에 의한 하천 월 유출량의 추계학적 추정에 관한 연구)

  • 김태철;정하우
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.22 no.3
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    • pp.75-87
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    • 1980
  • Most hydro]ogic phenomena are the complex and organic products of multiple causations like climatic and hydro-geological factors. A certain significant correlation on the run-off in river basin would be expected and foreseen in advance, and the effect of each these causual and associated factors (independant variables; present-month rainfall, previous-month run-off, evapotranspiration and relative humidity etc.) upon present-month run-off(dependent variable) may be determined by multiple regression analysis. Functions between independant and dependant variables should be treated repeatedly until satisfactory and optimal combination of independant variables can be obtained. Reliability of the estimated function should be tested according to the result of statistical criterion such as analysis of variance, coefficient of determination and significance-test of regression coefficients before first estimated multiple regression model in historical sequence is determined. But some error between observed and estimated run-off is still there. The error arises because the model used is an inadequate description of the system and because the data constituting the record represent only a sample from a population of monthly discharge observation, so that estimates of model parameter will be subject to sampling errors. Since this error which is a deviation from multiple regression plane cannot be explained by first estimated multiple regression equation, it can be considered as a random error governed by law of chance in nature. This unexplained variance by multiple regression equation can be solved by stochastic approach, that is, random error can be stochastically simulated by multiplying random normal variate to standard error of estimate. Finally hybrid model on estimation of monthly run-off in nonhistorical sequence can be determined by combining the determistic component of multiple regression equation and the stochastic component of random errors. Monthly run-off in Naju station in Yong-San river basin is estimated by multiple regression model and hybrid model. And some comparisons between observed and estimated run-off and between multiple regression model and already-existing estimation methods such as Gajiyama formula, tank model and Thomas-Fiering model are done. The results are as follows. (1) The optimal function to estimate monthly run-off in historical sequence is multiple linear regression equation in overall-month unit, that is; Qn=0.788Pn+0.130Qn-1-0.273En-0.1 About 85% of total variance of monthly runoff can be explained by multiple linear regression equation and its coefficient of determination (R2) is 0.843. This means we can estimate monthly runoff in historical sequence highly significantly with short data of observation by above mentioned equation. (2) The optimal function to estimate monthly runoff in nonhistorical sequence is hybrid model combined with multiple linear regression equation in overall-month unit and stochastic component, that is; Qn=0. 788Pn+0. l30Qn-1-0. 273En-0. 10+Sy.t The rest 15% of unexplained variance of monthly runoff can be explained by addition of stochastic process and a bit more reliable results of statistical characteristics of monthly runoff in non-historical sequence are derived. This estimated monthly runoff in non-historical sequence shows up the extraordinary value (maximum, minimum value) which is not appeared in the observed runoff as a random component. (3) "Frequency best fit coefficient" (R2f) of multiple linear regression equation is 0.847 which is the same value as Gaijyama's one. This implies that multiple linear regression equation and Gajiyama formula are theoretically rather reasonable functions.

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Development of the Combined Typhoon Surge-Tide-Wave Numerical Model Applicable to Shallow Water 1. Validation of the Hydrodynamic Part of the Model (천해에 적용가능한 태풍 해일-조석-파랑 수치모델 개발 1. 해수유동 모델의 정확성 검토)

  • Chun, Je-Ho;Ahn, Kyung-Mo;Yoon, Jong-Tae
    • Journal of Korean Society of Coastal and Ocean Engineers
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    • v.21 no.1
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    • pp.63-78
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    • 2009
  • This paper presents the development of dynamically combined Typhoon generated surge-tide-wave numerical model which is applicable to shallow water. The newly developed model is based on both POM (Princeton Ocean Model) for the surge and tide and WAM (WAve Model) for wind-generated waves, but is modified to be applicable to shallow water. In this paper which is the first paper of the two in a sequence, we verified the accuracy and numerical stability of the hydrodynamic part of the model which is responsible for the simulation of Typhoon generated surge and tide. In order to improve the accuracy and numerical stability of the combined model, we modified algorithms responsible for turbulent modeling as well as vertical velocity computation routine of POM. Verification of the model performance had been conducted by comparing numerical simulation results with analytic solutions as well as data obtained from field measurement. The modified POM is shown to be more accurate and numerically stable compare to the existing POM.

A Comparative Study of the Effects of Stair Exercise and Kegel Combined Exercise on the Maximum Voluntary Ventilation and Limits of Stability (계단 운동과 케겔 복합 운동이 최대 자발적 환기량과 안정성의 한계에 미치는 비교 연구)

  • Park, Kang-Hui;Park, Han-Kyu
    • Journal of The Korean Society of Integrative Medicine
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    • v.9 no.3
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    • pp.69-78
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    • 2021
  • Purpose : The purpose of this study was to investigate the effect of stair exercise and Kegel combined exercise on the maximum voluntary ventilation (MVV) and limits of stability (LOS). Methods : 23 female students participated in this experiment. MVV was measured with a spirometer. The LOS was measured with a Biorescue. Subjects were randomly assigned to two groups. 12 subjects were assigned to the experimental group and 11 subjects were assigned to the control group. The experimental group performed 5 minutes of stair exercise and 5 minutes of Kegel exercise. The control group performed 10 minutes of stair exercise. After 5 minutes of exercise, 1 minute of rest was provided. Both groups exercised for 5 minutes according to the metronome beat 130 during the stair exercise. After 5 minutes of rest after exercise, MVV and LOS were measured again in the same way. The measurement sequence was also randomly alternated. Results : Significant differences were found within and between groups in the experimental group in MVV (p<.05). In LOS, significant differences were confirmed in left, right, forward, backward, and total LOS in the experimental group (p<.05). In the control group, there were significant differences in left, forward, and total LOS (p<.05). However, there was no significant difference between groups (p>.05). Conclusion : Based on the results of this study, it was confirmed that the stairs and Kegel combined exercise had a positive effect on MVV and LOS. However, in the short term, it was found that the stair and Kegel combined exercise was insufficient in time and the threshold of exercise to show the difference between groups in LOS. Therefore, additional research should be conducted by modifying the limitations of this study.

Fragment Combination From DNA Sequence Data Using Fuzzy Reasoning Method (퍼지 추론기법을 이용한 DNA 염기 서열의 단편결합)

  • Kim, Kwang-Baek;Park, Hyun-Jung
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.10 no.12
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    • pp.2329-2334
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    • 2006
  • In this paper, we proposed a method complementing failure of combining DNA fragments, defect of conventional contig assembly programs. In the proposed method, very long DNA sequence data are made into a prototype of fragment of about 700 bases that can be analyzed by automatic sequence analyzer at one time, and then matching ratio is calculated by comparing a standard prototype with 3 fragmented clones of about 700 bases generated by the PCR method. In this process, the time for calculation of matching ratio is reduced by Compute Agreement algorithm. Two candidates of combined fragments of every prototype are extracted by the degree of overlapping of calculated fragment pairs, and then degree of combination is decided using a fuzzy reasoning method that utilizes the matching ratios of each extracted fragment, and A, C, G, T membership degrees of each DNA sequence, and previous frequencies of each A, C, G, T. In this paper. DNA sequence combination is completed by the iteration of the process to combine decided optimal test fragments until no fragment remains. For the experiments, fragments or about 700 bases were generated from each sequence of 10,000 bases and 100,000 bases extracted from 'PCC6803', complete protein genome. From the experiments by applying random notations on these fragments, we could see that the proposed method was faster than FAP program, and combination failure, defect of conventional contig assembly programs, did not occur.

Protein Analysis Using a Combination of an Online Monolithic Trypsin Immobilized Enzyme Reactor and Collisionally-Activated Dissociation/Electron Transfer Dissociation Dual Tandem Mass Spectrometry

  • Hwang, Hyo-Jin;Cho, Kun;Kim, Jin-Young;Kim, Young-Hwan;Oh, Han-Bin
    • Bulletin of the Korean Chemical Society
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    • v.33 no.10
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    • pp.3233-3240
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    • 2012
  • We demonstrated the combined applications of online protein digestion using trypsin immobilized enzyme reactor (IMER) and dual tandem mass spectrometry with collisionally activated dissociation (CAD) and electron transfer dissociation (ETD) for tryptic peptides eluted through the trypsin-IMER. For the trypsin-IMER, the organic and inorganic hybrid monolithic material was used. By employing the trypsin-IMER, the long digestion time could be saved with little or no sacrifice of the digestion efficiency, which was demonstrated for standard protein samples. For three model proteins (cytochrome c, carbonic anhydrase, and bovine serum albumin), the tryptic peptides digested by the IMER were analyzed using LC-MS/MS with the dual application of CAD and ETD. As previously shown by others, the dual application of CAD and ETD increased the sequence coverage in comparison with CAD application only. In particular, ETD was very useful for the analysis of highly-protontated peptide cations, e.g., ${\geq}3+$. The combination approach provided the advantages of both trypsin-IMER and CAD/ETD dual tandem mass spectrometry applications, which are rapid digestion (i.e., 10 min), good digestion efficiency, online coupling of trypsin-IMER and liquid chromatography, and high sequence coverage.

Weighted Soft Voting Classification for Emotion Recognition from Facial Expressions on Image Sequences (이미지 시퀀스 얼굴표정 기반 감정인식을 위한 가중 소프트 투표 분류 방법)

  • Kim, Kyeong Tae;Choi, Jae Young
    • Journal of Korea Multimedia Society
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    • v.20 no.8
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    • pp.1175-1186
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    • 2017
  • Human emotion recognition is one of the promising applications in the era of artificial super intelligence. Thus far, facial expression traits are considered to be the most widely used information cues for realizing automated emotion recognition. This paper proposes a novel facial expression recognition (FER) method that works well for recognizing emotion from image sequences. To this end, we develop the so-called weighted soft voting classification (WSVC) algorithm. In the proposed WSVC, a number of classifiers are first constructed using different and multiple feature representations. In next, multiple classifiers are used for generating the recognition result (namely, soft voting) of each face image within a face sequence, yielding multiple soft voting outputs. Finally, these soft voting outputs are combined through using a weighted combination to decide the emotion class (e.g., anger) of a given face sequence. The weights for combination are effectively determined by measuring the quality of each face image, namely "peak expression intensity" and "frontal-pose degree". To test the proposed WSVC, CK+ FER database was used to perform extensive and comparative experimentations. The feasibility of our WSVC algorithm has been successfully demonstrated by comparing recently developed FER algorithms.

Molecular Phylogenetic Study of Nesiohelix samarangae Based on CO-I Gene (동양달팽이 (Nesiohelix samarangae)의 CO-I 유전자를 이용한 분자계통학적 연구)

  • Bang, In Seok;Lee, Yong Seok
    • The Korean Journal of Malacology
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    • v.30 no.4
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    • pp.391-397
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    • 2014
  • Previously, we have reported expressed sequence tags (ESTs) analysis on the land snail, Nesiohelix samarangae (Ns). Of these ESTs, we have identified four partial fragments of N. samarangae cytochrome oxydase I (NsCO-I) gene which lead to obtain an 852 bp partial cDNA. Since NsCO-I is one of the best-known molecular phylogenetic markers, we have attempted to conduct comparative in silico analysis by using the NsCO-I gene. The combined results from BLAST analyses, multiple sequence alignment and molecular phylogenetic study of NsCO-I cDNA indicate that N. samarangae has similarity to three land snails such as Elona quimperiana, Euhadra herklotsi and Euhadra idzumonis.

Joint Transmitter and Receiver Optimization for Improper-Complex Second-Order Stationary Data Sequence

  • Yeo, Jeongho;Cho, Joon Ho;Lehnert, James S.
    • Journal of Communications and Networks
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    • v.17 no.1
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    • pp.1-11
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    • 2015
  • In this paper, the transmission of an improper-complex second-order stationary data sequence is considered over a strictly band-limited frequency-selective channel. It is assumed that the transmitter employs linear modulation and that the channel output is corrupted by additive proper-complex cyclostationary noise. Under the average transmit power constraint, the problem of minimizing the mean-squared error at the output of a widely linear receiver is formulated in the time domain to find the optimal transmit and receive waveforms. The optimization problem is converted into a frequency-domain problem by using the vectorized Fourier transform technique and put into the form of a double minimization. First, the widely linear receiver is optimized that requires, unlike the linear receiver design with only one waveform, the design of two receive waveforms. Then, the optimal transmit waveform for the linear modulator is derived by introducing the notion of the impropriety frequency function of a discrete-time random process and by performing a line search combined with an iterative algorithm. The optimal solution shows that both the periodic spectral correlation due to the cyclostationarity and the symmetric spectral correlation about the origin due to the impropriety are well exploited.

Human Proteome Data Analysis Protocol Obtained via the Bacterial Proteome Analysis

  • Kwon, Kyung-Hoon;Park, Gun-Wook;Kim, Jin-Young;Lee, Jeong-Hwa;Kim, Seung-Il;Yoo, Jong-Shin
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2005.09a
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    • pp.91-95
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    • 2005
  • In the multidimensional protein identification technology of high-throughput proteomics, we use one-dimensional gel electrophoresis and after the separation by two-dimensional liquid chromatography, the sample is analyzed by tandem mass spectrometry. In this study, we have analyzed the Pseudomonas Putida KT2440 protein. From the protein identification, the protein database was combined with its reversed sequence database. From the peptide selection whose error rate is less than 1%, the SEQUEST database search for the tandem mass spectral data identified 2,045 proteins. For each protein, we compared the molecular weight calibrated from 1D-gel band position with the theoretical molecular weight computed from the amino acid sequence, by defining a variable MW$_{corr}$ Since the bacterial proteome is simpler than human proteome considering the complexity and modifications, the proteome analysis result for the Pseudomonas Putida KT2440 could suggest a guideline to build the protocol to analyze human proteome data.

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