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Literature and Genomic Narrative: Richard Powers' The Book of Life (문학과 유전체 내러티브 -리차드 파워스의 생명의 책)

  • Song, Taejeong
    • Journal of English Language & Literature
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    • v.53 no.2
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    • pp.243-260
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    • 2007
  • This article explores how Richard Powers' The Gold Bug Variations, an interdisciplinary novel through the new concepts of biocriticism and bioliterature is connected with literature/art and science/technology. Powers uses Edgar Allen Poe's "The Gold Bug" and Johann Sebastian Bach's "The Goldberg Variations" for decoding DNA in order to analogize a genomic metaphor. He imagines literature as "the book of life" genome, written by DNA code due to the complexity and multiplicity of the genome. His novel, as 'genomic narrative,' shows the articulation of the genomic reading, and expression in the life language through the discourses of the information technology and the rhetorical tropes in biology. New biological ideas are continually required to articulate these processes. In the present tendency of the Human Genome Project, such advanced devices as biocybernetics offer the potential to open up new possibilities to researching the complexity of the genome. This can only happen if the following two ideas are followed: One is to comply with advanced technologies for processing the rapidly increasing data of the genome sequence; The other is to admit the necessary paradigm shift in biology. As shown above, the complexity and multiplicity of the genomic reality is not so simple. We must go beyond determinism, even if representation of a biological reality reveals the possibility of expressing its constituent elements by the advanced biotechnology. Consequently, in the unstoppable advances of the art of decoding the genome, The Gold Bug Variations interrelates to the interdisciplinary approaches through the rhetorical tropes that unfold the complex discursive world of the genome. Powers shows that the complex mechanisms of the genome in the microworld of every cell as the plot of "the book of life" can be designed and written using DNA language. At the same time, his genomic reading and writing demonstrate the historical processes of the shifting center of new genomic development and polysemous interpretation.

Benchmarking of BioPerl, Perl, BioJava, Java, BioPython, and Python for Primitive Bioinformatics Tasks and Choosing a Suitable Language

  • Ryu, Tae-Wan
    • International Journal of Contents
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    • v.5 no.2
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    • pp.6-15
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    • 2009
  • Recently many different programming languages have emerged for the development of bioinformatics applications. In addition to the traditional languages, languages from open source projects such as BioPerl, BioPython, and BioJava have become popular because they provide special tools for biological data processing and are easy to use. However, it is not well-studied which of these programming languages will be most suitable for a given bioinformatics task and which factors should be considered in choosing a language for a project. Like many other application projects, bioinformatics projects also require various types of tasks. Accordingly, it will be a challenge to characterize all the aspects of a project in order to choose a language. However, most projects require some common and primitive tasks such as file I/O, text processing, and basic computation for counting, translation, statistics, etc. This paper presents the benchmarking results of six popular languages, Perl, BioPerl, Python, BioPython, Java, and BioJava, for several common and simple bioinformatics tasks. The experimental results of each language are compared through quantitative evaluation metrics such as execution time, memory usage, and size of the source code. Other qualitative factors, including writeability, readability, portability, scalability, and maintainability, that affect the success of a project are also discussed. The results of this research can be useful for developers in choosing an appropriate language for the development of bioinformatics applications.

Study of 3D Simulator for Human Hand Writing (3차원 방식의 수기 모사 연구)

  • Kang, Tae-Won;Lee, Kee Sung;Choi, WonSik;Kim, Tae-Woo
    • Journal of the Korean Society of Manufacturing Technology Engineers
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    • v.22 no.2
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    • pp.192-198
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    • 2013
  • A light-weight enough to be portable yet functionally complete hand-writing machine was designed with hardware assembled and software implemented. The machine simulating human hand-writing not only allows identical massive scriptings on papers in human's proxy, but also offers emotional appearance as if the script was directly hand-written in ink. The features of human writing were independently put together to complete the action of scripting. The writing style could be altered in order to mimic a person's own specific writing style. The present work demonstrates that the assembled hand-writing machine was able to duplicate writing of scripts in almost parallel lines in consistent manner. The machine can be used in the emotional marketing area where seasonal greetings or thank-you cards are to be sent in massive manner. The pen-holding machine can also find an emotional application such as writing a short greeting note on a plastic lid on a disposable coffee cup in coffee-selling stores.

Content-based Retrieval System using Image Shape Features (영상 형태 특징을 이용한 내용 기반 검색 시스템)

  • 황병곤;정성호;이상열
    • Journal of Korea Society of Industrial Information Systems
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    • v.6 no.1
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    • pp.33-38
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    • 2001
  • In this paper, we present an image retrieval system using shape features. The preprocessing to gain shape feature includes edge extraction using chain code. The shape features consist of center of mass, standard deviation, ratio of major axis and minor axis length. The similarity is estimated as comparing the features of query image with the features of images in database. Thus, the candidates of images are retrieved according to the order of similarity. The result of an experimentation is dullness for scale, rotation and translation. We evaluate the performance of shape features for image retrieval on a database with over 170 images. The Recall and the Precision is each 0.72 and 0.83 in the result of average experiment. So the proposed method is presented useful method.

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Exploiting Implicit Parallelism for Single Loops in Java Programming Language (JAVA 프로그래밍 언어에서 단일루프구조의 무시적 병렬성 검출)

  • Kwon, Oh-Jin
    • Journal of Information Management
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    • v.29 no.3
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    • pp.1-26
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    • 1998
  • The loop is a fundamental for the parallelism exploiting as it has a large portion of execution time for sequential Java program on the parallel machine. This paper proposes the method of exploiting the implicit parallelism through the analysis of data dependence in the existing Java programming language having a single loop structure. The parallel code generation method through the restructuring compiler and the translation method of Java source program into multithread statement, which is supported in the level of the Java programming language, are also proposed here. The performance test of the program translated into the thread statement is conducted using the trip count of loop and the thread count as parameters. The restructuring compiler makes it possible for users to reduce overhead and exploit parallelism efficiently in the Java programming.

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The Declarations Reconstruction Technique for the Symbol Table Verification of the Object-oriented Compiler (객체지향 컴파일러의 심벌 테이블 검증을 위한 선언문 복원 기법)

  • Son, Min-Sung;Kwon, Hyeok-Ju;Kim, Young-Keun;Lee, Yang-Sun
    • Proceedings of the Korea Information Processing Society Conference
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    • 2006.11a
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    • pp.669-672
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    • 2006
  • 본 연구팀은 유비쿼터스 게임 플랫폼을 위한 Embedded C++ 컴파일러를 개발하였으며, 컴파일러 개발 과정에서 객체지향언어인 C++과 Java 언어를 모두 수용할 수 있는 심벌 테이블을 설계하였다. 심벌 테이블은 컴파일러의 어휘 분석과 구문 분석 과정을 거친 후 SDT(syntax-directed translation)에 의해 생성된 AST(Abstract Syntax Tree)를 분석하여 인식된 명칭(identifier)과 그 속성(attribute)들을 수집하여 저장하는 자료구조로써, 심벌 테이블에 저장된 속성들은 의미 분석(semantic analysis) 단계에서 수집된 속성과 참조된 명칭의 사용이 타당한지를 검사하고, 코드 생성(code generation) 단계에서 올바른 코드가 생성되도록 하는 중요한 요소이다. 따라서 심벌 테이블의 설계가 올바른지와 입력된 속성이 정확한지에 대한 검증과 분석은 필수 불가결하다. 본 논문에서는 컴파일러 개발과정에서 설계한 심벌 테이블을 검증하고 분석하기 위한 목적으로써 심벌 테이블을 이용하여 선언문을 복원시키는 역번역기(detranslator)에 대하여 기술한다. 구현된 역번역기는 C++ 컴파일러와 Java 컴파일러의 선언문 처리 과정에서 심벌 테이블에 입력된 속성들을 본래의 입력 프로그램으로 역번역한다. 따라서 역번역기를 통하여 심벌 테이블의 완전성과 심벌 테이블에 입력된 속성 정보의 정확성을 쉽게 검증할 수 있으며, 역번역과 함께 출력되는 디버그 정보를 이용하여 효율적으로 컴파일러의 개발과 수정을 할 수 있다.

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The Reducting Technique of compulsory Misses for S/W managed TLB (S/W관리 TLB의 초기접근실패 감소 기법)

  • Park, Jang-Suk
    • The Transactions of the Korea Information Processing Society
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    • v.5 no.3
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    • pp.620-632
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    • 1998
  • This paper introduces a new teehniquc for reducing the compulsory misses of software-managed TLBs by prefetching necessary TLB entries before being used. This technique is not inherently limited to specific applications. The key of this scheme is to perform the prefetch operations to update the TLB entries before first accesses so that TLB misses can be avoided. For the identifications of the prefctch pages, the new classification is introduced, which is based 0n the view of an object code execution. Then, the algorithms and the implementation technique arc described. Using a quantitative analysis, the proposed scheme is evaluated to prove that it is a useful technique for the perronnall~~ ~nhan~"ment of the S/W managed TLBs. in addition, it is discussed that reducing the miss rate by the prefeteh scheme reduces the total miss penalty and bus traffics in S/W-managed TLBs.

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A Study On the Design of Cosine, Sine Function Generator for the Display of Graphics (그래픽 디스프레이에 적합한 Cosine, Sine함수 발생기 설계에 관한 연구)

  • Kim, Yong-Sung
    • The Journal of Information Technology
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    • v.8 no.3
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    • pp.1-10
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    • 2005
  • Cosine and Sine function is widely used for the arithmetic, translation, object drawing, Simulation and etc. of Computer Graphics in Natural Science and Engineering. In general, Cordic Algorithm is effective method since it has relatively small size and simple architecture on trigonometric function generation. However profitably it has those merits, the problem of operation speed is occurred. In graphic display system, the operation result of object drawing is quantized and has the condition that is satisfied with rms error less than 1. So in this paper, the proposed generator is composed of partition operation at each ${\pi}/4$ and basic Cosine, Sine function generator in the range of $0{\sim}{\pi}/4$ using the lower order of Tayler's series in an acceptable error range, that enlarge the range of $0{\sim}2{\pi}$ according to a definition of the trigonometric function for the purpose of having a high speed Cosine, Sine function generation. And, division operator using code partition for divisor three is proposed, the proposed function generator has high speed operation, but it has the problems in the other application parts with accurate results, is need to increase the speed of the multiplication.

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The design and implementation of automatic translation system for hangul's romanization (국어 로마자 표기 자동 변환 시스템 설계 및 구현)

  • 김홍섭
    • KSCI Review
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    • v.2 no.1
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    • pp.45-54
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    • 1995
  • This study is, by assigning ASCII codes hardly used to Bandaljum(ˇ) and making the fonts of Korean-English character mode, to design the way of converting automatically a word, a sentence or a document of korean into phonetic letters by applying the algorismized phonological principles inputted as a letter string, even though a user do not konw the basic principles of the usage of Korean-to-Romanization notation rule. This is designed so that it may be possible to turn into a mechanical code with reference to the corresponding character in the table of Korean-to-Romanization notation rule that is the currently used standard proposition of the government. Consequently this program makes it user more convenient in the manipulations of special case words, the assistance of colorful-screen or pull-down, pop-up menu and the adoptation of utilizable mouse works for a user convienency. This program could be installed in a single diskette of 5.25"(2HD) and be made in C programming language to mplement various font, expansion or condense of font, alternative printing.ting.

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Semantic Representation and Translation of Electronic Product Code(EPC) data in EPC Network (EPC 네트워크의 전자물품코드(EPC) 데이터 의미표현과 해석)

  • Park, Dae-Won;Kwon, Hyuk-Chul
    • Journal of KIISE:Software and Applications
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    • v.36 no.1
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    • pp.70-81
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    • 2009
  • Ontology is an explicit specification of concepts and relationships between concepts in an interest domain. As considered as one of typical knowledge representation methods, ontology is applied to various studies such as information extraction, information integration, information sharing, or knowledge management. In IT based industries, ontology is applied to research on information integration and sharing in order to enhance interoperability between enterprises. In supply chains or logistics, several enterprises participate as business partners to plan movements of goods, and control goods and logistics flows. A number of researches on information integration and sharing for the effective and efficient management of logistics or supply chains have been addressed. In this paper, we address an ontology as a knowledge-base for semantic-based integration of logistics information distributed in the logistics flow. Especially, we focus on developing an ontology that enables to represent and translate semantic meaning of EPC data in the EPC Network applied logistics. We present a scenario for tracing products in logistics in order to show the value of our ontology.