• Title/Summary/Keyword: Chromosome analysis

Search Result 871, Processing Time 0.037 seconds

Karyotype Classification of Chromosome Using the Hierarchical Neu (계층형 신경회로망을 이용한 염색체 핵형 분류)

  • Chang, Yong-Hoon;Lee, Young-Jin;Lee, Kwon-Soon
    • Proceedings of the KIEE Conference
    • /
    • 1998.07b
    • /
    • pp.555-559
    • /
    • 1998
  • The human chromosome analysis is widely used to diagnose genetic disease and various congenital anomalies. Many researches on automated chromosome karyotype analysis have been carried out, some of which produced commercial systems. However, there still remains much room for improving the accuracy of chromosome classification. In this paper, We proposed an optimal pattern classifier by neural network to improve the accuracy of chromosome classification. The proposed pattern classifier was built up of two-step multi-layer neural network(TMANN). We reconstructed chromosome image to improve the chromosome classification accuracy and extracted four morphological features parameters such as centromeric index (C.I.), relative length ratio(R.L.), relative area ratio(R.A.) and chromosome length(C.L.). These Parameters employed as input in neural network by preprocessing twenty human chromosome images. The experiment results shown that the chromosome classification error was reduced much more than that of the other classification methods.

  • PDF

Morphological Feature Parameter Extraction from the Chromosome Image Using Reconstruction Algorithm (염색체 영상의 재구성에 의한 형태학적 특징 파라메타 추출)

  • 장용훈;이권순
    • Journal of Biomedical Engineering Research
    • /
    • v.17 no.4
    • /
    • pp.545-552
    • /
    • 1996
  • Researches on chromosome are very significant in cytogenetics since a gene of the chromosome controls revelation of the inheritance plasma The human chromosome analysis is widely used to diagnose genetic disease and various congenital anomalies. Many researches on automated chromosome karyotype analysis has been carried out, some of which produced commercial systems. However, there still remains much room for improving the accuracy of chromosome classification. In this paper, we propose an algorithm for reconstruction of the chromosDme image to improve the chromosome classification accuracy. Morphological feature parameters are extracted from the reconstructed chromosome images. The reconstruction method from chromosome image is the 32 direction line algorithm. We extract three morphological feature parameters, centromeric index(C.I.), relative length ratio(R.L.), and relative area ratio(R.A.), by preprocessing ten human chromosDme images. The experimental results show that proposed algorithm is better than that of other researchers'comparing by feature parameter errors.

  • PDF

A Case of Mosaic Ring Chromosome 4 Diagnosed by FISH Technique (FISH에 의해 확진된 Mosaic Ring Chromosome 4의 환아 1 예)

  • Yun, Sook-Kyung;Lim, Min-Hye;Kim, Sil-Kyung;Cho, Hyoun-Chan
    • Korean Journal of Clinical Laboratory Science
    • /
    • v.41 no.1
    • /
    • pp.6-10
    • /
    • 2009
  • Ring chromosome occurs when both telomeres of a chromosome are lost and the remaining portion of the chromosome circularizes to re-establish chromosome stability. This abnormal structure shows mitotic instability unlike the normal chromosomes, causing problems during mitosis. Here, we report one case of "chromosome 4 ring syndrome" on a 6-month-old male patient with growth retardation. Ring chromosome, monosomy, dicentric chromosome were shown by conventional chromosome analysis using peripheral blood. Peripheral blood was used and incubated for 72 hours for chromosome analysis. 3 probes (LSI WHS SpectrumOrange/CEP 4 SpectrumGreen, 4p subtelomere probe, 4q subtelomere probe) were used to detect the origin and breakpoint of ring chromosome 4 by FISH (fluorescense in situ hybridization) technique.

  • PDF

Chromosome Analysis System based on Knowledge Base for CAI (지식 베이스를 이용한 교육용 염색체 분석 시스템)

  • 박정선;신용원
    • Proceedings of the Korea Inteligent Information System Society Conference
    • /
    • 2001.06a
    • /
    • pp.215-222
    • /
    • 2001
  • The task for chromosome analysis and diagnosis by experienced cytogenetists are being concerned as repetitive, time consuming job and expensive. FOr that reason, chromosome analysis system based on knowledge base for CAI had been established to be able to analyze chromosomes and obtain necessary advises from the knowledge base instead of human experts. That s to say, knowledge base by IF THEN production rule was implemented to a knowledge domain with normal and abnormal chromosomes, and then the inference results by knowledge base could enter the inference data into the database. Experimental data were composed of normal chromosome of 2,736 patients'cases and abnormal chromosomes of 259 patients'cases that have been obtained from GTG-banding metaphase peripheral blood and amniotic fluid samples. The complete system provides variously morphological information by analysis of normal or abnormal chromosomes and it also has the advantage of being able to consult with user on chromosome analysis and diagnosis.

  • PDF

Comparative Karyological Analysis of the Korean Treefrogs, Hyla japonica and Hyla suweonensis (Anura, Hylidae) (한국산 청개구리 두 종(Hyla japonica와 H.suweonensis)의 핵형 비교분석)

  • 이혜영;유성림
    • The Korean Journal of Zoology
    • /
    • v.31 no.2
    • /
    • pp.104-110
    • /
    • 1988
  • The comparative karyological analysis of the Korean treefrog, Hyla japonica and Hyla suweonensis performed by conventional giemsa-staining and NOR-staining method. The karyotypes of both species were the same (2n=24). However, according to the Karyological analysis, the 6th chromosomes of the two species distinctly different. Eventhough the 6th chromosomes of the two species shown the same % length, construction of the 6th chromosome of H.japonica was subtelocentric chromosome while H. suweonensis was submetacentric chromosome. This phenomena could explain that the morphological differences in the 6th chromosomes might be caused by pericentric inversion. The two species have 1 pair of NOR site in the 6th chromosome.

  • PDF

The Implementation of Hierarchical Artificial Neural Network Classifier for Chromosome Karyotype Classification (염색체 핵형 분류를 위한 계층적 인공 신경회로망 분류기 구현)

  • Jeon, Gye-Rok;Choe, Uk-Hwan;Nam, Gi-Gon;Eom, Sang-Hui;Lee, Gwon-Sun;Jang, Yong-Hun
    • Journal of Biomedical Engineering Research
    • /
    • v.18 no.3
    • /
    • pp.233-241
    • /
    • 1997
  • The research on chromosomes is very significant in cytogenetics since genes of the chromosomes control revelation of the inheritance plasma. The human chromosome analysis is widely used to study leukemia, malignancy, radiation hazard, and mutagen dosimetry as well as various congenital anomalies such as Down's, Klinefelter's, Edward's, and Patau's syndrome. The framing and analysis of the chromosome karyogram, which requires specific cytogenetic knowledge is most important in this field. Many researches on automated chromosome karyotype analysis methods have been carried out, some of which produced commercial systems. However, there still remains much room to improve the accuracy of chromosome classification and to reduce the processing time in real clinic environments. In this paper, we proposed a hierarchical artificial neural network(HANN) to classify the chromosome karyotype. We extracted three or four chromosome morphological feature parameters such as centromeric index, relative length ratio, relative area ratio, and chromosome length by preprocessing from ten human chromosome images. The feature parameters of five human chromosome images were used to learn HANN and the rest of them were used to classify the chromosome images. The experiment results show that the chromosome classification error is reduced much more than that of the other researchers using less feature parameters.

  • PDF

Analysis of FISH patterns using 5S and 45S rDNAs in Codonopsis minima and C. lanceolata from Jeju Island (5S와 45S rDNA 유전자를 이용한 제주도산 애기더덕 (Codonopsis minima)과 더덕 (C. lanceolata)의 FISH 패턴 분석)

  • Kim, Soo-Young;Kim, Chan-Soo
    • Korean Journal of Medicinal Crop Science
    • /
    • v.18 no.3
    • /
    • pp.186-190
    • /
    • 2010
  • The chromosome number was identified and fluorescence in situ hybridization(FISH) mapping of 5S and 45S rDNAs were conducted for C. minima and C. lanceolata in the genus Codonopsis from Jeju island. In this study, we have confirmed that the somatic metaphase chromosome number determined as 2n=2x=16 was the same as the findings from the previous studies. While the conventional staining method makes it rather difficult to distinguish satellite chromosomes due to high degree of variability, FISH analysis produced the exact number and location of 5S and 45S rDNAs. Both species in the genus Codonopsis have a pair of 5S rDNA and their gene loci were observed on chromosome 3. Although two pairs of 45S rDNAs (one on chromosome 1 and the other on chromosome 8) were identified in both species, the 45S rDNA signals on chromosome 8 in C. minima were significantly weaker than those on chromosome 1. In addition, the 45S rDNA signals on chromosome 1 in C. lanceolata showed that the chromosome is non-homologus. In this study, we have determined cytogenetic characteristics of C. minima and C. lanceolata according to their gene replication patterns.

Constructing intelligent agent for chromosome knowledge base

  • Shin, Yong-Won
    • Proceedings of the KAIS Fall Conference
    • /
    • 2003.11a
    • /
    • pp.3-9
    • /
    • 2003
  • The task for chromosome analysis and diagnosis by experienced cytogenetists are being concerned as repetitive, time consuming job and expensive. For that reason, intelligent agent based on chromosome knowledge base has been established to be able to analyze chromosomes and obtain necessary advises from the knowledge base instead of human experts. That is to say, knowledge base by IF THEN production rule was implemented to a knowledge domain with normal and abnormal chromosomes, and then the inference results by knowledge base could enter the inference data into the database. Experimental data were composed of normal chromosomes of 2,736 patients 'cases and abnormal chromosomes of 259 patients' cases that have been obtained from GTG-banding metaphase peripheral blood and amniotic fluid samples. The completed intelligent agent for chromosome knowledge base provides variously morphological information by analysis of normal or abnormal chromosomes and it also has the advantage of being able to consult with user on chromosome analysis and diagnosis.

  • PDF

The Chromosome Studies in the Korean Population ( A Preliminary Note) (한국인의 염색체에 관한 연구(예보))

  • 김영선
    • The Korean Journal of Zoology
    • /
    • v.7 no.1
    • /
    • pp.29-32
    • /
    • 1964
  • A study on chromosome of leucocytes in blood cultures derived from 6 normal Korean was performed . Exact chromosome counts were carried out on 205 cells in male, 211 in female , of which 86.05% revealed a chormosome mordal number of 46. On the basis of relative chromosome lengths and position of centromeres, the Karyotype that the human chromosomes were classified into 7 groups with 22 airs of autosome and one pair of sex chromosome was determined accoridng to the method of denver report. The chromosome number on metaphase was observed in short term cultures of leucocytes from the peripheral blood of 2 patients with chronic granulocytic leukemia and 1 patient with acute granulocitic leukemia . and the chromosome morpholoogy was also investigated in one acute leukemic patient. In all leukemic cases the leucocytes showed the constant value of 46 in the stem -line of chormosome number. But the frequency of cells with 46 chromosomes appeared in the 3 cases was 67.30% in average with a slightly higher range in hypo-andhyper-diploid chromosome numbers than in normal human, The idiogram analysis did not show any abnormality of chromosome in acute leukemic cells.

  • PDF

The Study of G- Banding Chromosome in Silkie (오골계의 염색체 분염법 (G-banding)에 따른 핵형분석에 관한 연구)

  • 강태석;오봉국;손시환
    • Korean Journal of Poultry Science
    • /
    • v.12 no.2
    • /
    • pp.83-87
    • /
    • 1985
  • This experiment was carried out to identify the chromosomes of silkie. It was many difference from other breeds in morphology and characteristics. In this experiment, chromosomal analysis was used early embryos. In aspect of morphological chromosomes, chromosomal size and shape are similar to other breeds. The chromosomes of silkie were shown to morphlogy as follows. They were identified that chromosome #l and #2 were grouped as submentacentric, #3, #5 and #6 were telocentric #4 and #7 were acrocentric and #8 was metacentric chromosome. Zㆍsex chromosome was shown 5th, W-sex chromosome was 8th to 9th and they were metacentric chromosome, respectively. Each chromosome through the G-banding was shown the 3 dark bands in 1 p2, distinct light band in 1p1, dark band in 2p2, broad light band in 3pl, dark band from centromere and distal part in 4th chromosome and dark band in 5pl. Z-sex chromosome was shown dark at p-arm distal part.

  • PDF