• Title/Summary/Keyword: Blast

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Performance Improvement of BLAST using Grid Computing and Implementation of Genome Sequence Analysis System (그리드 컴퓨팅을 이용한 BLAST 성능개선 및 유전체 서열분석 시스템 구현)

  • Kim, Dong-Wook;Choi, Han-Suk
    • The Journal of the Korea Contents Association
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    • v.10 no.7
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    • pp.81-87
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    • 2010
  • This paper proposes a G-BLAST(BLAST using Grid Computing) system, an integrated software package for BLAST searches operated in heterogeneous distributed environment. G-BLAST employed 'database splicing' method to improve the performance of BLAST searches using exists computing resources. G-BLAST is a basic local alignment search tool of DNA Sequence using grid computing in heterogeneous distributed environment. The G-BLAST improved the existing BLAST search performance in gene sequence analysis. Also G-BLAST implemented the pipeline and data management method for users to easily manage and analyze the BLAST search results. The proposed G-BLAST system has been confirmed the speed and efficiency of BLAST search performance in heterogeneous distributed computing.

Outbreak of Rice Blast Disease at Yeoju of Korea in 2020

  • Chung, Hyunjung;Jeong, Da Gyeong;Lee, Ji-Hyun;Kang, In Jeong;Shim, Hyeong-Kwon;An, Chi Jung;Kim, Joo Yeon;Yang, Jung-Wook
    • The Plant Pathology Journal
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    • v.38 no.1
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    • pp.46-51
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    • 2022
  • Rice blast is the most destructive disease threatening stable rice production in rice-growing areas. Cultivation of disease-resistant rice cultivars is the most effective way to control rice blast disease. However, the rice blast resistance is easy to breakdown within years by blast fungus that continually changes to adapt to new cultivars. Therefore, it is important to continuously monitor the incidence of rice blast disease and race differentiation of rice blast fungus in fields. In 2020, a severe rice blast disease occurred nationwide in Korea. We evaluated the incidence of rice blast disease in Yeoju and compared the weather conditions at the periods of rice blast disease in 2019 and 2020. We investigated the races and avirulence genes of rice blast isolates in Yeoju to identify race diversity and genetic characteristics of the isolates. This study will provide empirical support for rice blast control and the breeding of blast-resistant rice cultivars.

NBLAST: a graphical user interface-based two-way BLAST software with a dot plot viewer

  • Choi, Beom-Soon;Choi, Seon Kang;Kim, Nam-Soo;Choi, Ik-Young
    • Genomics & Informatics
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    • v.20 no.3
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    • pp.36.1-36.6
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    • 2022
  • BLAST, a basic bioinformatics tool for searching local sequence similarity, has been one of the most widely used bioinformatics programs since its introduction in 1990. Users generally use the web-based NCBI-BLAST program for BLAST analysis. However, users with large sequence data are often faced with a problem of upload size limitation while using the web-based BLAST program. This proves inconvenient as scientists often want to run BLAST on their own data, such as transcriptome or whole genome sequences. To overcome this issue, we developed NBLAST, a graphical user interface-based BLAST program that employs a two-way system, allowing the use of input sequences either as "query" or "target" in the BLAST analysis. NBLAST is also equipped with a dot plot viewer, thus allowing researchers to create custom database for BLAST and run a dot plot similarity analysis within a single program. It is available to access to the NBLAST with http://nbitglobal.com/nblast.

Comparison of Assessment method of Blast Vibration (발파 진동 평가의 문제점과 개선방안)

  • Chang, Seo-Il;Lee, Jae-Won;Kim, Hyung-Kon
    • Proceedings of the Korean Society for Noise and Vibration Engineering Conference
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    • 2002.11a
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    • pp.357.2-357
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    • 2002
  • The blast vibration can generate occupants dissatisfy as well as damage of physics nearby building. Then blast vibration estimation issue important problems. But, now blast vibration prediction inside-outside country not established objective method according to blast number to express magnitude of vibration. In this study, Our propoes show our country problem of blast vibration about blast vibration measurement and this problems be able to find improve method. (omitted)

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Performance Analysis of the Optimal Turbo Coded V-BLAST technique in Adaptive Modulation System (적응 변조 시스템에서 최적의 터보 부호화된 V-BLAST 기법의 성능 분석)

  • Lee, Kyung-Hwan;Choi, Kwang-Wook;Ryoo, Sang-Jin;Kang, Min-Goo;Hong, Dae-Ki;You, Cheol-Woo;Hwang, In-Tae;Kim, Cheol-Sung
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.11 no.2
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    • pp.385-391
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    • 2007
  • In this paper, we propose and observe the Adaptive Modulation system with optimal Turbo Coded V-BLAST (Vertical-Bell-lab Layered Space-Time) technique that is applied the extrinsic information from MAP (Maximum A Posteriori) Decoder with Iterative Decoding to use as a priori probability in two decoding procedures of V-BLAST: ordering and slicing. Also, comparing with the Adaptive Modulation system using conventional Turbo Coded V-BLAST technique that is simply combined V-BLAST with Turbo Coding scheme, we observe how much throughput performance has been improved. As a result of simulation, in the Adaptive Modulation systems with several Turbo Coded V-BLAST techniques, the optimal Turbo Coded V-BLAST technique has higher throughput gain than the conventional Turbo Coded V-BLAST technique. Especially, the results show that the proposed scheme achieves the gain of 1.5 dB SNR compared to the conventional system at 2.5 Mbps throughput.

Blast Overpressure Evaluation for Blast Valves in Protective Tunnels with Rectangular-Shaped Tunnel Entrances (각형 출입구를 갖는 방호터널의 방폭밸브에 미치는 폭압 평가)

  • Pang, Seungki;Shin, Jinwon
    • Journal of the Korean Society for Geothermal and Hydrothermal Energy
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    • v.17 no.4
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    • pp.79-90
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    • 2021
  • This paper presents a study to reduce the effect of blast pressure on the blast valves installed in protection tunnels, where the shape of the tunnel entrance and the blast pocket is optimized based on the predetermined basic shape of the protective tunnels. The reliability of the numerical tunnel models was examined by performing analyses of mesh convergence and overpressure stability and with comparison to the data in blast-load design charts in UFC 3-340-02 (DoD, 2008). An optimal mesh size and a stabilized distance of overpressure were proposed, and the numerical results were validated based on the UFC data. A parametric study to reduce the blast overpressures in tunnel was conducted using the validated numerical model. Analysis was performed applying 1) the entrance slope of 90, 75, 60, and 45 degrees, 2) two blast pockets with the depth 0.5, 1.0, and 1.5 times the tunnel width, 3) the three types of curved back walls of the blast pockets, and 4) two types of the upper and lower surfaces of the blast pockets to the reference tunnel model. An optimal solution by combining the analysis results of the tunnel entrance shape, the depth of the blast pockets, and the upper and lower parts of the blast pockets was provided in comparison to the reference tunnel model. The blast overpressures using the proposed tunnel shape have been reduced effectively.

Study on the Composite Blast Wall Test (복합 재료 폭파 방화벽 실험 연구)

  • Yang, Hyun-jung;Kang, Young-Jong
    • Journal of the Korean Society for Advanced Composite Structures
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    • v.1 no.4
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    • pp.6-12
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    • 2010
  • This study investigates how to apply composite material to the blast loading protection devices, mainly used for military purpose. Traditionally, earth-filled blast walls have been used for protecting important parts of military facilities and personnels. However these types of blast walls show difficulty in fabrication and portability because of their nature of heavy weight. Composite materials are known to have relatively higher specific stiffness and strength than any other metallic and earth-filled materials such as sand and gravels. Totally 4 times of TNT blast experiments were performed on the carbon/epoxy blast walls. After the end of each test, the improvement of blast wall was implemented to the structure. The test results show that the use of composite material in the blast protecting area is the one of very effective and reliable alternatives.

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A Study On Structural Stability Of Blast Door by Blast Pressure (폭압에 의한 방폭문의 구조적 안정성에 대한 연구)

  • Kim, Nam Hyuk;Park, Kwan Jin;Lee, Keun-Oh
    • Journal of the Korean Society of Safety
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    • v.31 no.3
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    • pp.8-15
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    • 2016
  • The purpose of this study is to design a model with the structural stability so as not to lose the operational function due to structural plastic or fail of a sliding blast door by blast pressure to this aim, a numerical simulation was performed using full-size experiments and M&S (Modeling & Simulation) of the sliding blast door. The sliding blast door ($W3,000{\times}H2,500mm$) under the blast load is in the form of a sliding type 2-way metal grill, which was applied by a design blast pressure (reflected pressure $P_r$) of 17 bar. According to the experimental results of a real sliding blast door under blast load, the blast pressure reached the sliding blast door approximately 4.3 ms after the explosion and lasted about 4.0 ms thereafter. The maximum blast pressure($P_r$) was 347.7 psi (2,397.3 kPa), it is similar to the UFC 3-340-02 of Parameter(91 %). In addition, operation inspection that was conducted for the sliding blast door after real test showed a problem of losing the door opening function, which was because of the fail of the Reversal Bolt that was installed to prevent the shock due to rebound of the blast door from the blast pressure. According to the reproduction of the experiment through M&S by applying the blast pressure measurement value of the full-size experiments, the sliding blast door showed a similar result to the full-size experiment in that the reversal bolt part failed to lose the function. In addition, as the pressure is concentrated on the failed reversal bolt, the Principal Tensile Failure Stress was exceeded in only 1.25 ms after the explosion, and the reversal bolt completely failed after 5.4 ms. Based on the result of the failed reversal bolt through the full-size experiment and M&S, the shape and size of the bolts were changed to re-design the M&S and re-analyze the sliding blast door. According to the M&S re-analysis result when the reversal bolt was designed in a square of 25 mm ($625mm^2$), the maximum pressure that the reversal bolt receives showed 81% of the principal tensile failure stress of the material, in plastic stage before fail.

Effect of Blast Furnace Slag, Hwang-toh and Reinforcing Fibers on The Physical and Mechanical Properties of Porous Concrete Using Blast Furnace Slag Coarse Aggregate (고로슬래그 골재를 사용한 다공성 콘크리트의 물리·역학적 특성에 미치는 고로슬래그 미분말, 황토 및 보강섬유의 효과)

  • Lee, Jin-Hyung;Park, Chan-Gi
    • Journal of The Korean Society of Agricultural Engineers
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    • v.52 no.5
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    • pp.53-60
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    • 2010
  • The effects of blast furnace slag, hwang-toh, and reinforcing fiber on the physical and mechanical properties of porous concrete using blast furnace slag coarse aggregates have been evaluated in this study. The effect of the depending on replacement ratio of blast furnace slag to cement was investigated such that the replacement ratio was varied to 0 %, 25 % and 50 %. Also, the replacement ratios of hwang-toh were 0, 20 and 30 %. The polyvinyl alcohol fiber was used for the reinforcing fiber. A series of pH, unit mass, and void ratio tests have been performed to study the physical properties of the porous concrete using blast furnace slag coarse aggregates with the polyvinyl alcohol fiber and the replacement ratios of blast furnace slag, hwang-toh, while a series of compressive tests have been performed to evaluate the strength property depending on polyvinyl alcohol fiber and the replacement ratios of blast furnace slag, hwang-toh. The test results indicated that the physical and mechanical properties of porous concrete using blast furnace slag coarse aggregates is affected by the replacement ratio of blast furnace slag, and the fiber contents. According to the tests with polyvinyl alcohol fiber contents, the void ratio was decreased and the compressive strength was upgraded.

An Enhanced BLAST-OFDM System With Spatial Diversity and interleaved Frequency Diversity (공간 다이버시티 및 인터리빙 주파수 다이버시티 기반 BLAST-OFDM 시스템)

  • 황현정;김낙명
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.29 no.8C
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    • pp.1040-1046
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    • 2004
  • The BLAST-OFDM system is an efficient method for high data rate multimedia transmission in futurewireless communication system. In this paper, a linear preceding mechanism and an efficient antenna-subcarrier assignment algorithm are proposed for the conventional BLAST-OFDM system, in order to utilize the full spatial diversity and the interleaved frequency diversity. By computer simulation, the proposed system has proved to achieve 4-5㏈ gain over the conventional BLAST-OFDM system.