• Journal of Microbiology and Biotechnology
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• v.26 no.4
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• pp.730-738
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• 2016

est19 is a gene from Bacillus sp. K91 that encodes a new esterase. A comparison of the amino acid sequence showed that Est19 has typical Ser-Gly-Asn-His (SGNH) family motifs and could be grouped into the SGNH hydrolase family. The Est19 protein was functionally cloned, and expressed and purified from Escherichia coli BL21(DE3). The enzyme activity was optimal at 60℃ and pH 9.0, and displayed esterase activity towards esters with short-chain acyl esters (C₂-C₆). A structural model of Est19 was constructed using phospholipase A1 from Streptomyces albidoflavus NA297 as a template. The structure showed an α/β-hydrolase fold and indicated the presence of the typical catalytic triad Ser49-Asp227-His230, which were further investigated by site-directed mutagenesis. To the best of our knowledge, Est19 is a new member of the SGNH hydrolase family identified from thermophiles, which may be applicable in the industrial production of semisynthetic β-lactam antibiotics after modification.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.46 no.6
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• pp.878-885
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• 2013

Seasonal variation in marine macroalgal community structure was examined at the intertidal zones of Heuksando and Hongdo, Shinan, Korea, from July 2008 to May 2009. In total, 86 macroalgal species were identified, including 12 green, 19 brown, and 55 red algae; 67 species at Heuksando and 70 species at Hongdo, were observed. Annual seaweed biomass was 252.44 g dry $wt/m^2$ at Heuksando and 217.67 g dry $wt/m^2$ at Hongdo. The dominant seaweed in importance value (IV > 15) differed between the sites: Sargassum thunbergii at Heuksando and Corallina pilulifera at Hongdo. The vertical distribution pattern of seaweeds from the upper to lower intertidal zones at Heuksando was Gloiopeltis spp., Ulva spp. - S. thunbergii, S. fusiforme, Hildenbrandia rubra - S. thunbergii, C. pilulifera. On the rocky shore of Hongdo, seaweed zonation was distinct: Porphyra yezoensis, Gloiopeltis spp., Ulva spp. - C. pilulifera, S. fusiforme, Myelophycus simplex - Chondrus ocellatus, C. pilulifera, and Carpopeltis affinis. Annual seaweed coverage, richness index (R), evenness index (J'), and diversity index (H') values were greater at Hongdo (41.35%, 12.82, 0.59, and 2.50 respectively) than at Heuksando (31.54%, 11.93, 0.44, and 1.87 respectively), which may indicate that the seaweed community at Hongdo is more stable relative to the one at Heuksando.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.44 no.5
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• pp.506-515
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• 2011

To elucidate demersal organism community structure, abundance, and biomass by period and region in the Uljin marine ranching area, otter trawl surveys were conducted at six stations from February 2008 to December 2009. During the survey period, a total of 118 species was collected in the Uljin marine ranching area, including 76 pisces, 27 mollusca and 15 crustaceans. The average abundance of individuals was 806 ind./$m^2$ and average biomass was 31,853 g/m2. The numbers of species, species richness, individuals per area and biomass per area were higher in 2009 than in 2008. Cluster and MDS analysis, based on a Bray-Curtis similarity matrix of fourth root transformed data of number of species and individuals per area, showed division into two different groups of demersal organisms in 2008 (Group 1) and one demersal organism community in 2009 (Group 2). From cluster and MDS analysis using the similarity of the demersal community among six stations, the Uljin marine ranching area was divided into Group A (St. 2, St. 4, St. 5 and St. 6) and Group B (St. 1 and St. 3).

• ALGAE
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• v.23 no.4
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• pp.317-326
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• 2008

Marine algal flora and community structure were investigated seasonally at three sites in Ilkwang Bay on the southern east coast of Korea from May 2007 to February 2008. Total 103 species including 10 of green algae, 17 of brown algae, 76 of red algae were collected and identified. Among these species, 21 species were found throughout the year. Ulva pertusa, Enteromorpha linza, Grateloupia lanceolata, Chondracanthus intermedia and Caulacanthus ustulatus were distributed dominantly in upper intertidal zone. By contrast, crustose coralline algae, Grateloupia spp., Chondracanthus tenellus, Prionitis cornea and Sargassum spp. occurred predominantly in middle intertidal zone. Grateloupia spp., Sargassum spp., Ecklonia cava and Ulva pertusa were dominant in lower intertidal zone. Annual mean biomass in wet weight was 478.3 g m$^{-2}$. Maximum biomass was recorded in site 1 (731.8 g m$^{-2}$), and minimum was recorded in site 3 (78.5 g m$^{-2}$). The R/P, C/P and (R + C)/P value reflecting flora characteristics were 4.47, 0.59 and 5.06, respectively. Two groups produced by cluster analysis, one including sites 1, 2 and the other including site 3, showed meaningful difference in similarity, each other. Site 3 showed the limited species composition due to inflow of fresh water and absence of solid substratum. However, there was no significant difference between site 1 and site 2. In conclusion, the number of marine algae species and biomass in Ilkwang Bay were markedly reduced comparing with the previous studies. These suggest that a solution for reconstruction of the poor marine algal vegetation is considerably demanded.

• Journal of Navigation and Port Research
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• v.30 no.4
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• pp.309-314
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• 2006

Community structure and biodiversity of benthic marine algae were studied in the rocky shore of Phohang New Port, Yeoungil Bay. A total of 79 species of marine algae including 8 Chlorophyta, 23 Phaeophyta and 48 Rhodophyta are listed. The dominant algal species were Corallina pilulifera in all seasons, and Sargassum homeri in winter. Lomentaria catenata, Lomentaria hakodatensis, Grateloupia laceolata, Sargassum thunbergii, Chondria crassicaulis, Ulva pertusa, and Hypnea charoides were subdominant at different seasons. The algal biomass per unit area of the benthic algal community in Pohang New Port under construction was 14506 - 398.93 g dry wt m-2, which means that its annually averaged value is 273.45 g dry wt m-2 . The seasonal change in algal biomass showed highs in winter and spring, and lows in summer and autumn. The algal species diversity (H') based on algal biomass was 2.07 annually in average, with 2.42 in winter, 2.65 in spring, 1.79 in summer and 1.43 in autumn. It was high in winter and spring seasons and low in summer and autumn seasons. It is caused by that spring and winter are the profitable growth time for algae and species components in this study were dominated by the annual or seasonal rather than perennial plants.

• Journal of Marine Bioscience and Biotechnology
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• v.14 no.2
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• pp.102-111
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• 2022

Beakryoung-do is located in the north along the western coast of South Korea. Owing to its geographical limitations, not many studies have been conducted on marine algae in this region. This study aims to investigate the marine algal flora and the community structure in the intertidal and subtidal zones of Nampo-ri, Beakryoung-myeon, Ongin-gun, Incheon regions of South Korea. The study was conducted from August 2015 to June 2016 during all seasons. A total of 95 algal species, including 7 green algae, 12 brown algae, and 76 red algae were collected and identified; 52 algal species were found in the intertidal zone and 83 in the subtidal zone. The vertical distribution of algae from upper to lower intertidal zone was Neorhodomela aculeata - Caulacanthus okamurae, Gelidiophycus freshwateri - Neorhodomela aculeata, Caulacanthus okamurae - Sargassum thunbergii, Caulacanthus okamurae. Findings indicated that Sargassum thunbergii and Neorhodomela aculeata were the biomass-dominant species in the intertidal zone and Corallina officinalis and Undaria pinnatifida were biomass-dominant in the subtidal zone. Average values of marine algae biomass in the intertidal and subtidal zones were 252.6 g wet weight m^-2 and 291.9 g wet weight m^-2, respectively. Further, 38 new species were found in Beakryoung-do, with 25 of them specifically found in the subtidal zone. More studies on marine algal flora in the subtidal zone are needed to understand the changes in marine flora along the western coast.

• Proceedings of the National Institute of Ecology of the Republic of Korea
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• v.4 no.2
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• pp.86-94
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• 2023

Climate change is more rapid in the Arctic than elsewhere in the world, and increased precipitation and warming are expected cause changes in biogeochemical processes due to altered microbial communities and activities. It is crucial to investigate microbial responses to climate change to understand changes in carbon and nitrogen dynamics. We investigated the effects of increased temperature and precipitation on microbial biomass and community structure in dry tundra using two depths of soil samples (organic and mineral layers) under four treatments (control, warming, increased precipitation, and warming with increased precipitation) during the growing season (June-September) in Cambridge Bay, Canada (69°N, 105°W). A phospholipid fatty acid (PLFA) analysis method was applied to detect active microorganisms and distinguish major functional groups (e.g., fungi and bacteria) with different roles in organic matter decomposition. The soil layers featured different biomass and community structure; ratios of fungal/bacterial and gram-positive/-negative bacteria were higher in the mineral layer, possibly connected to low substrate quality. Increased temperature and precipitation had no effect in either layer, possibly due to the relatively short treatment period (seven years) or the ecosystem type. Mostly, sampling times did not affect PLFAs in the organic layer, but June mineral soil samples showed higher contents of total PLFAs and PLFA biomarkers for bacteria and fungi than those in other months. Despite the lack of response found in this investigation, long-term monitoring of these communities should be maintained because of the slow response times of vegetation and other parameters in high-Arctic ecosystems.

• Journal of Korean Society of Forest Science
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• v.87 no.2
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• pp.173-178
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• 1998

Twelve Camellia sinensis populations were studied to investigate the biomass distribution related to stand structure. With increasing mean age of the population, mean root collar diameter increased, while mean height, density and root collar area had no correlation with the age. The result of dimension analysis after cutting the sample trees showed that dry weights of stems +branches and root were exponentially increased and dry weights of current leaves and twigs were linearly increased with increasing root collar diameter. However, the dry weight of older leaves was not related to the root collar diameter. The range of total biomass was 1,162~11,474kg/ha and the range of current leaf biomass was 165~1,341kg/ha. The range of T/R ratio was 1.5~2.8. The biomass of stems+branches and root were significantly correlated with the root collar area of the population and were not significantly correlated with the mean age, mean root collar diameter and density of the population. The biomass of current leaves and twigs were significantly correlated with the root collar area and density of the population.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.50 no.5
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• pp.553-560
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• 2017

Fluctuations in the abundance and species composition of fishes in the coastal waters of Geumo-do, Yeosu, Jeollanam-do, Korea were investigated from 2002 to 2005. A gill net with entrances on both sides was used to collect a total of 469 individuals (55,180 g) of 3 orders, 18 families, and 28 species. The dominant species was Sebastes inermis (60 individuals, 5,670 g), followed by Neoditrema ransonneti (46 individuals, 2,290 g), and Pseudaesopia japonica (38 individuals, 3,080 g). The highest number of individuals was found in 2004, while the biomass was highest in 2005. The diversity index was highest in 2004 (H'=2.703) and lowest in 2002 (H'=2.580). The dominance index was highest in 2004 (D=3.983) and lowest in 2002 (D=3.404). The richness index was highest in 2003 (RI=0.337) and lowest in 2002 (RI=0.261). Changes in temperature and salinity affected the community structure and the location of spawning grounds. The number of individuals and total biomass increased with changes in temperature and salinity each year.

• ALGAE
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• v.23 no.2
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• pp.141-150
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• 2008

Populations of Codium amplivesiculatum were found in association with rhodolith beds. We present population trends of C. amplivesiculatum from surveys conducted in the southwestern Gulf of California based on monthly sampling from June 1999 to August 2000. Surveys were conducted at 2 sites in the San Lorenzo Channel at depths of 8 - 12 m. The parameters measured were percent cover, biomass and structure in relation to size of the thalli. From each thallus the following measurements were taken: length and diameter, proportion of each thallus with reproductive structures and the degree of fragmentation (measured as number of small thalli). Mean biomass and cover varied seasonally with the maximum (1036.6 gm$^{-2}$ and 100% cover) present in June 2000 and the minimum in winter (0 gm$^{-2}$ and 0% cover). The longest fronds (3 m) occurred during July 1999 and August 2000, while the maximum diameters of 1.0 cm were present during October and November 1999. There were no significant linear relationships between length and diameter of the fronds, suggesting independent growth. Reproductive structures were common in June and July 1999 with monoic and dioic thalli present. Most fronds were monoic, and this is the first record of this feature for this species. Fragmentation occurred in September, and may be associated with stress from early gametangial reproduction and the combination of high temperatures and low nutrients. A hypothetical life cycle for the species is presented.