Identification and Characterization of a New Alkaline SGNH Hydrolase from a Thermophilic Bacterium Bacillus sp. K91 |
Yu, Tingting
(Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University)
Ding, Junmei (Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University) Zheng, Qingxia (Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University) Han, Nanyu (Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University) Yu, Jialin (Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University) Yang, Yunjuan (Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University) Li, Junjun (Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University) Mu, Yuelin (Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University) Wu, Qian (Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University) Huang, Zunxi (Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University) |
1 | Yang C, Cai N, Dong M, Jiang H, Li J, Qiao C, et al. 2008. Surface display of MPH on Pseudomonas putida JS4444 using ice nucleation protein and its application in detoxification of organophosphates. Biotechnol. Bioeng. 99: 30-37. DOI |
2 | Yin X, Zhang ZJ. 2010. Recent patents on plant transgenic technology. Recent Pat. Biotechnol. 4: 98-111. DOI |
3 | Yu S, Zheng B, Zhao X, Feng Y. 2010. Gene cloning and characterization of a novel thermophilic esterase from Fervidobacterium nodosum RT17-B1. Acta Biochim. Biophys. Sin. 42: 288-295. DOI |
4 | Zhang S, Wu G, Feng S, Liu Z. 2014. Improved thermostability of esterase from Aspergillus fumigatus by site-directed mutagenesis. Enzyme Microb. Technol. 64-65: 11-16. DOI |
5 | Akoh CC, Lee GC, Liaw YC, Huang TH, Shaw JF. 2004. GDSL family of serine esterases/lipases. Prog. Lipid Res. 43: 534-552. DOI |
6 | Alalouf O, Balazs Y, Volkinshtein M, Grimpel Y, Shoham G, Shoham Y. 2011. A new family of carbohydrate esterases is represented by a GDSL hydrolase/acetylxylan esterase from Geobacillus stearothermophilus. J. Biol. Chem. 286: 41993-42001. DOI |
7 | Arnold K, Bordoli L, Kopp J, Schwede T. 2006. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201. DOI |
8 | Bielen A, Cetkoviæ H, Long PF, Schwab H, Abramiæ M, Vujaklija D. 2009. The SGNH-hydrolase of Streptomyces coelicolor has (aryl) esterase and a true lipase activity. Biochimie 91: 390-400. DOI |
9 | Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248-254. DOI |
10 | Choi D, Kim Y, Chung I, Lee S, Kang S, Han K. 2000. Gene cloning and expression of cephalosporin-C deacetylase from Bacillus sp. KCCM10143. J. Microbiol. Biotechnol. 10: 221-226. |
11 | Ding JM, Yu TT, Liang LM, Xie ZR, Yang YJ, Zhou JP, et al. 2014. Biochemical characterization of a GDSL-motif esterase from Bacillus sp. K91 with a new putative catalytic mechanism. J. Microbiol. Biotechnol. 24: 1551-1558. DOI |
12 | Colombres M, Garate JA, Lagos CF, Araya-Secchi R, Norambuena P, Quiroz S, et al. 2008. An eleven amino acid residue deletion expands the substrate specificity of acetyl xylan esterase II (AXE II) from Penicillium purpurogenum. J. Comput. Aided Mol. Des. 22: 19-28. DOI |
13 | Correia MA, Prates JA, Brás J, Fontes CM, Newman JA, Lewis RJ, et al. 2008. Crystal structure of a cellulosomal family 3 carbohydrate esterase from Clostridium thermocellum provides insights into the mechanism of substrate recognition. J. Mol. Biol. 379: 64-72. DOI |
14 | Dickinson BC, Packer MS, Badran AH, Liu DR. 2014. A system for the continuous directed evolution of proteases rapidly reveals drug-resistance mutations. Nat. Commun. 5: 5352. DOI |
15 | Gouet P, Courcelle E, Stuart DI, Metoz F. 1999. ESPript:analysis of multiple sequence alignments in PostScript. Bioinformatics 15: 305-308. DOI |
16 | Hwang H, Kim S, Yoon S, Ryu Y, Lee SY, Kim TD. 2010. Characterization of a novel oligomeric SGNH-arylesterase from Sinorhizobium meliloti 1021. Int. J. Biol. Macromol. 46: 145-152. DOI |
17 | Kauppinen S, Christgau S, Kofod LV, Halkier T, Dorreich K, Dalboge H. 1995. Molecular cloning and characterization of a rhamnogalacturonan acetylesterase from Aspergillus aculeatus. Synergism between rhamnogalacturonan degrading enzymes. J. Biol. Chem. 270: 27172-27178. DOI |
18 | Li J, Derewenda U, Dauter Z, Smith S, Derewenda ZS. 2000. Crystal structure of the Escherichia coli thioesterase II, a homolog of the human Nef binding enzyme. Nat. Struct. Biol. 7: 555-559. DOI |
19 | Kikuta Y, Yamada G, Mitsumori T, Takeuchi T, Nakayama K, Katsuda Y, et al. 2013. Requirement of catalytic-triad and related amino acids for the acyltransferase activity of Tanacetum cinerariifolium GDSL lipase/esterase TcGLIP for ester-bond formation in pyrethrin biosynthesis. Biosci. Biotechnol. Biochem. 77: 1822-1825. DOI |
20 | Levisson M, van der Oost J, Kengen SW. 2007. Characterization and structural modeling of a new type of thermostable esterase from Thermotoga maritima. FEBS J. 274: 2832-2842. DOI |
21 | Lo YC, Lin SC, Shaw JF, Liaw YC. 2003. Crystal structure of Escherichia coli thioesterase I/protease I/lysophospholipase L 1: consensus sequence blocks constitute the catalytic center of SGNH-hydrolases through a conserved hydrogen bond network. J. Mol. Biol. 330: 539-551. DOI |
22 | Molgaard A, Kauppinen S, Larsen S. 2000. Rhamnogalacturonan acetylesterase elucidates the structure and function of a new family of hydrolases. Structure 8: 373-383. DOI |
23 | Navarro-Fernández J, Martínez-Martínez I, Montoro-García S, García-Carmona F, Takami H, Sánchez-Ferrer A. 2008. Characterization of a new rhamnogalacturonan acetyl esterase from Bacillus halodurans C-125 with a new putative carbohydrate binding domain. J. Bacteriol. 190: 1375-1382. DOI |
24 | Okamura Y, Kimura T, Yokouchi H, Meneses-Osorio M, Katoh M, Matsunaga T, et al. 2010. Isolation and characterization of a GDSL esterase from the metagenome of a marine sponge-associated bacteria. Mar. Biotechnol. 12: 395-402. DOI |
25 | Privé F, Kaderbhai NN, Girdwood S, Worgan HJ, Pinloche E, Scollan ND, et al. 2013. Identification and characterization of three novel lipases belonging to families II and V from Anaerovibrio lipolyticus 5ST. PLoS One 8: e69076. DOI |
26 | Panikashvili D, Shi JX, Schreiber L, Aharoni. 2009. The Arabidopsis DCR encoding a soluble BAHD acyltransferase is required for cutin polyester formation and seed hydration properties. Plant Physiol. 151: 1773-1789. DOI |
27 | Parka JJ, Jin P, Yoon J, Yang JI, Jeong HJ, Ranathunge K, et al. 2010. Mutation in wilted dwarf and lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice. Plant Mol. Biol. 74: 91-103. DOI |
28 | Pfeffer JM, Weadge JT, Clarke AJ. 2013. Mechanism of action of Neisseria gonorrhoeae O-acetylpeptidoglycan esterase, an SGNH serine esterase. J. Biol. Chem. 288: 2605-2613. DOI |
29 | Schwede T, Kopp J, Guex N, Peitsch MC. 2003. SWISS-model: an automated protein homology-modeling server. Nucleic Acids Res. 31: 3381-3385. DOI |
30 | Thompson JD, Higgins DG, Gibson TJ. 1994. Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. DOI |
31 | Upton C, Buckley JT. 1995. A new family of lipolytic enzymes? Trends Biochem. Sci. 20: 178-179. DOI |
32 | Volokita M, Rosilio-Brami T, Rivkin N, Zik M. 2011. Combining comparative sequence and genomic data to ascertain phylogenetic relationships and explore the evolution of the large GDSL-lipase family in land plants. Mol. Biol. Evol. 28: 551-565. DOI |