• Title/Summary/Keyword: BioSIM

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Tuber Yield and Size Distribution of Potato 'Dejima' (Solanum tuberosum L.) Affected by Stem Cutting Ages and Harvest Time in Aeroponics (경삽묘 연령과 수확시기가 분무경재배 씨감자 '대지'의 생육과 수량에 미치는 영향)

  • Chae, Won-Byoung;Ahn, Seung-Joon;Choi, Hak-Soon;Kwack, Yong-Bum;Goo, Dae-Hoe;Jeong, Myeong-Il
    • Journal of Bio-Environment Control
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    • v.17 no.4
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    • pp.261-265
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    • 2008
  • This study was carried out to investigate the effects of stem cutting ages and harvest time on the growth and yield of potato 'Dejima' in aeroponics. The stem cuttings were produced from in vitro plantlets and transplanted into an aeroponic system with 20, 30, 40 and 50 day-old stem cuttings (DOS). Tubers were harvested 60, 70, 80 and 90 days after transplanting (DAT) and sorted into following categories: $1{\sim}5$, $5{\sim}10$, $10{\sim}20$, $20{\sim}30$, $30{\sim}40$ and over 40 g. Plant height from the 40 DOS was the highest during the growing periods but no significant difference was observed on 75 DAT. The tuber weight increased until 90 DAT with the greatest weight of tubers in the 20 and 40 DOS. However, there was no significant difference among 20, 30 and 40 DOS in the number and weight of tubers. Harvesting at 80 and 90 DAT increased the number of tubers over 5 g, which are usually considered as appropriate for direct field planting.

Technical development for the short-log bag cultivation of Sparassis crispa (꽃송이버섯의 단목봉지재배 기술개발)

  • Yu, Young-Jin;Seo, Sang-Young;Seo, Kyoung-Won;Choi, Dong-Chil;Jo, Houng-Ki;Yu, Young-Bok;Soung, Young-Ju;Ryu, Jeong
    • Journal of Mushroom
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    • v.8 no.1
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    • pp.16-21
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    • 2010
  • Sparassis crispa(Cauliflower mushroom) was an edible mushroom that shows remarkably high contents of 1.3-${\beta}$-Dglucan compared to other edible mushroom. The mushroom was known to give high antitumor and immunology activated, and then this mushroom was recently cultivated in Japan and Korea. However, cultivation methods ware becoming kept in secret or patents by some companies with complicated procedures. And it was not established cultivation methods of Sparassis crispa up to now. This study was conducted to solve the problem by short-log cultivation method of Sparassis crispa. Some factors effecting on the mycelial growth and primordial formation of Sparassis crispa were investigated. We could produce the mushroom using short-woods of Larix leptolepis, Pinus densiflora, Pinus rigida and Quercus acutissima. We get to high yield fruit-body on short-log cultivaiton of Pinus rigida. And soaking for 8hours in water solution containing 5% uncooked yeast with short-wood of Pinus rigida. The optimal moisture content and temperature were 90~95% and $23{\sim}25^{\circ}C$, respectively.

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The Effects of Extracts Mixture Drink from Inonotus Obliquus, Phellinus Linteus and Ganoderma Lucidum on Hematopoietic Stem Cells and Lymphocyte Subset of Blood in Human (차가버섯, 상황버섯 및 영지버섯 복합추출물 복용이 인체의 혈중 조혈모세포와 면역세포에 미치는 영향)

  • Bae, Hyung-Suk;Kang, Sung-Keun;Shin, Il-Seob;Woo, Sang-Kyu;Kim, Yun-Joung;Kim, Mi-Ae;Ra, Jeong-Chan
    • Journal of Food Hygiene and Safety
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    • v.24 no.1
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    • pp.78-85
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    • 2009
  • This study was performed to investigate the effect of extract mixture(IPGE) drink from Inonotus Obliquus, Phellinus Linteus and Ganoderma Lucidum on hematopoietic stem cells and lymphocyte subset[lymphocyte, $CD4^+T$ cell, $CD8^+T$ cell, Natural Killer(NK) cells] of blood in 37 participants who were healthy and about $40{\sim}70$ years old. They were divided into two groups; extract mixture drink administration group(n=27) and placebo administration group(n=12). They were given the test drink daily for 4 weeks. Blood was obtained from the subjects every two week in the beginning of administration day to evaluate the $CD34^+$ hematopoietic stem cells and immune cells. As results, $CD34^+$ hematopoietic stem cells were significantly increased after taking IPGE drink for 4 weeks compared to that before taking the drink (p<0.001). There was no significant changes in number of lymphocytes, $CD4^+T$ cells, $CD8^+T$ cells, NK cells and in the ratio of $CD4^+/CD8^+$ cell after taking the test drink. From these results, it was suggested that IPGE have a good health effect by promoting the proliferation of the hematopoietic stem cells.

Tribological Characteristics in $40{\mu}m$ Dimple Pattern for Hexagonal Array (Hexagonal 배열 $40{\mu}m$ Dimple 패턴의 트라이볼로지적 특성)

  • Choi, Won-Sik;Chae, Young-Hoon;Umehara, Noritsugu
    • Tribology and Lubricants
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    • v.25 no.1
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    • pp.25-30
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    • 2009
  • 본 연구에서는 pin-on-disk 마찰 시험기를 통하여 Hexagonal 배열 $40{\mu}m$ Dimple 패턴의 효과를 실험하였다. 마찰 실험은 미끄럼 속도가 $0.06{\sim}0.34m/s$로 하였으며 마찰하중은 $20{\sim}100\;N$의 범위로 하였고, Dimple의 밀도는 $10{\sim}25%$의 범위로 제작하여 실험을 행하였다. 일반적으로 속도가 증가하고 하중이 감소할수록 마찰계수는 감소하는 경향을 나타내었으며, Dimple에 의한 마찰저감 효과는 속도가 $0.14{\sim}0.26m/s$의 범위에서 나타났다. $40{\mu}m$ Hexagonal 배열 Dimple 패턴의 마찰 특성에서는 밀도가 12.5%에서 가장 좋은 경향을 나타내었다.

Antioxidative and Biological Activity of Hot Water and Ethanol Extracts from Phellinus linteus (상황버섯 열수 및 에탄올 추출물의 항산화 효과 및 생리활성)

  • Kim, Jung-Ok;Jung, Mee-Jung;Choi, Hyang-Ja;Lee, Jin-Tae;Lim, Ae-Kyoung;Hong, Joo-Heon;Kim, Dae-Ik
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.37 no.6
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    • pp.684-690
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    • 2008
  • To investigate the applicability of hot water extract (PLW) and ethanol extract (PLE) from Phellinus linteus as functional food and cosmeceutical materials, its total flavonoids content, total phenolics content, electron donating ability (EDA), nitrite-scavenging ability (NSA), SOD-like activity, inhibitory effect of tyrosinase and elastase were examined. Total flavonoids contents of PLW and PLE were 17.31 mg/g and 42.61 mg/g, respectively, and total phenolics contents were estimated as 149.92 mg/g for PLW and 432.42 mg/g for PLE. The EDA of PLW and PLE were $6.49{\sim}92.98%$ and $22.61{\sim}94.28%$. The EDA and total phenolics contents had a high correlation of 0.83. The NSA was pH dependent, and was highest at pH 1.2 and lowest at pH 6.0. The NSA of PLE was higher than that of PLW. The SOD-like activities of PLW and PLE were $14.36{\sim}35.21%$ and $17.27{\sim}81.84%$, respectively, and the activity was dependent on the sample concentration. The tyrosinase inhibitory activity was the highest in PLE ($10.51{\sim}80.93%$) while that of PLW was $4.77{\sim}43.69%$. Finally, the elastase inhibitory activity was $10.01{\sim}76.02%$ at PLE. Based on the above results, we deemed that the ethanol extract of Phellinus linteus was the most pertinent for use as functional food and cosmeceutical materials.

Quantitative Analysis of Carotenoids in Carrot Cultivars Produced in Korea (국내산 당근 품종별 carotenoid 함량 분석)

  • Ha, Jeong-Lim;Bae, Jong-Sup;Park, Moon-Ki;Kim, Yong-Ung;Ha, Sun-Hwa;Bae, Jung-Myung;Back, Kyong-Whan;Lee, Cheol-Ho;Lee, Shin-Woo;Ahn, Mi-Jeong
    • Journal of Environmental Science International
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    • v.18 no.10
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    • pp.1135-1141
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    • 2009
  • Carrots (Daucus carota L.) are consumed as an important dietary source of provitamin A including $\beta$-carotene, $\alpha$-carotene and lutein. An HPLC method was applied to determine the content of the carotenoid composition in carrot cutivars cultivated in Korea. HPLC analyses were carried out with five carrot cultivars (Socheon-5-chon, Hongsim-5-chon, Myeongju-5-chon, Seonhongbom-5-chon and Betarich) sown at April, 2007 and six cultivars (Yeoreum-5-chon, Hanyeoreum-5-chon, Sinheukjeon-5-chon, Bibariheukjeon, Manina and Betarich) sown at August of the same year. In general, the former varieties are not used for the sowing at summer because of their bolting (growth of floral axis). The former and the latter carrots were harvested after 110 and 96 days from seeding, respectively, and the carotenoids were extracted with acetone after freeze-drying. The amount of $\alpha$-carotene ($117.7{\sim}205.3\;{\mu}g/g{\cdot}DW$) was similar to that of $\beta$-carotene ($113.1{\sim}189.6\;{\mu}g/g{\cdot}DW$) for the carrot cultivars sown at spring, while the content ($46.2{\sim}71.1\;{\mu}g/g{\cdot}DW$) was about a half of $\beta$-carotene content ($92.5{\sim}140.2\;{\mu}g/g{\cdot}DW$) for the latter cultivars. In addition, the average content of lutein ($25.2\;{\mu}g/g{\cdot}DW$) in the former cultivars was eight times higher than that in the latter cultivars ($3.1\;{\mu}g/g{\cdot}DW$). Among the spring cultivation types, Socheon-5-chon and Myeongju-5-chon showed higher amount of $\alpha$-carotene and $\beta$-carotene, while the higher amount was determined in Yeoreum-5-chon and Sinheukjeon-5-chon among the autumn cultivation types. Validation of the HPLC-DAD method showed good linearity ($r^2$ > 0.997) of the three compounds analyzed in a wide concentration range ($0.025{\sim}20\;{\mu}g/ml$). The R.S.D. values for intra-day and inter-day precision were less than 19.2% and the mean recovery of each compound was 85.4~104.7%.

Protein and Amino Acid Composition of Domestic Potato Cultivars (국내산 감자 주요 품종의 아미노산 및 단백질 조성)

  • Kwon, Oh-Yun;Kim, Mi-Yeon;Son, Chan-Wok;Liu, Xi-Wen;Kim, Hyoung-Chin;Yoon, Won-Kee;Kim, Hwan-Mook;Kim, Mee-Ree
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.37 no.1
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    • pp.117-123
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    • 2008
  • The protein profiles of domestic potato cultivars were evaluated for total protein determination, amino acid composition, SDS-PAGE analysis and scanning densitometry. There were statistically significant differences in the levels of amino acids among potato cultivars. Total nitrogen amount was also significantly different among cultivars, ranging from 1.27 to 1.64%. SDS-PAGE analysis showed that there were significant differences in the content of major potato proteins such as papatin (40 kDa), trypsin inhibitor (20 kDa) and protease inhibitor (15 kDa) among cultivars (p<0.05). The amount of papatin among cultivars with a range of 22.16 to 25.81 mg/g d.w. was higher in Jopung, Shepody and Superior, whereas the amount of protease inhibitors including 15 kDa and 20 kDa was the highest in Jopung (37.0%). The Shepody contains the highest amount of papatin (25.8%) and the lowest of trypsin inhibitor (5.22%). Thus, it is suggested that Shepody is the most desirable cultivar for better nutrition based on the protein profile.

Conformational Dependent Energy Migration on Cyclic Porphyrin Arrays

  • Song, Suwhan;Han, Minwoo;Sim, Eunji
    • Proceeding of EDISON Challenge
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    • 2015.03a
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    • pp.163-166
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    • 2015
  • Intramolecular energy migration in a cyclic porphyrin array is spontaneous transfer of energy from one excited site to another. Since the efficiency of energy migration is inversely proportional to distance, the energy migration is occurred on their adjacent sites more often than distant ones. Therefore, the energy migration in the cyclic porphyrin array is largely dependent on their conformational characters. However, evaluation of conformational information by means of experimental tools is ambiguous since their limited resolution. In this work, we calculate the internal angle and distance distributions of cyclic porphyrin arrays using molecular dynamics simulations to obtain conformational information. To evaluate the angle and distance distributions respect to molecular size, we constructed molecules with n porphyrin dimers (n=1,3,7) in implicit solvent environment. Performing molecular dynamics simulations, we modulated alkyl groups to investigate additional conformational effects of the system.

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Synthesis and Herbicidal Activities of Tetrahydroindazole Derivatives Possessing Hydroxyalkyl Subgroup (하이드록시알킬 치환체를 갖는 테트라하이드로인다졸계 화합물의 합성과 제초활성 연구)

  • Ko, Young-Kwan;Chung, Kun-Hoe;Ryu, Jae-Wook;Woo, Jae-Chun;Koo, Dong-Wan;Choi, Jung-Sup;Kim, Jun-Young;Kim, Su-Ho;Kim, Tae-Joon;Choi, In-Young;Seok, Mee-Young;Choi, Jun-Hyuk;Chung, Bong-Jin
    • The Korean Journal of Pesticide Science
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    • v.12 no.2
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    • pp.201-205
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    • 2008
  • As an ongoing research program for the development of environmental friendly new soil-surface treatment herbicide, several tetrahydroindazole derivatives 6a - 6h possessing hydroxyalkyl subgroup were synthesized and shown to have interesting herbicidal activities exhibiting sumptoms as protoporphyrinogen IX oxidase inhibitor under pre-emergence upland greenhouse screening. Among derivatives tested, compound 6f showed superior herbicidal activity against problem weeds.

Efficiency to Discovery Transgenic Loci in GM Rice Using Next Generation Sequencing Whole Genome Re-sequencing

  • Park, Doori;Kim, Dongin;Jang, Green;Lim, Jongsung;Shin, Yun-Ji;Kim, Jina;Seo, Mi-Seong;Park, Su-Hyun;Kim, Ju-Kon;Kwon, Tae-Ho;Choi, Ik-Young
    • Genomics & Informatics
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    • v.13 no.3
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    • pp.81-85
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    • 2015
  • Molecular characterization technology in genetically modified organisms, in addition to how transgenic biotechnologies are developed now require full transparency to assess the risk to living modified and non-modified organisms. Next generation sequencing (NGS) methodology is suggested as an effective means in genome characterization and detection of transgenic insertion locations. In the present study, we applied NGS to insert transgenic loci, specifically the epidermal growth factor (EGF) in genetically modified rice cells. A total of 29.3 Gb (${\sim}72{\times}coverage$) was sequenced with a $2{\times}150bp$ paired end method by Illumina HiSeq2500, which was consecutively mapped to the rice genome and T-vector sequence. The compatible pairs of reads were successfully mapped to 10 loci on the rice chromosome and vector sequences were validated to the insertion location by polymerase chain reaction (PCR) amplification. The EGF transgenic site was confirmed only on chromosome 4 by PCR. Results of this study demonstrated the success of NGS data to characterize the rice genome. Bioinformatics analyses must be developed in association with NGS data to identify highly accurate transgenic sites.