• 제목/요약/키워드: Bio code

검색결과 75건 처리시간 0.025초

전기장의 국소변화에 따른 전기삼투 유동 및 혼합 특성해석 (A STUDY ON CHARACTERISTICS OF EECTRO-OSMOTIC FLOWS UNDER THE LOCAL VARIATION OF THE ELECTRIC FIELD)

  • 허형석;정종현;서용권
    • 한국전산유체공학회:학술대회논문집
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    • 한국전산유체공학회 2005년도 추계 학술대회논문집
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    • pp.27-30
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    • 2005
  • In a microfluidic chips pressure driven flow or electro-osmotic flow has been usually employed to deliver bio-samples. Flow in the chips is usually slow and the mixing performance is poor. A micro-mixer with a rapid mixing is important for practical applications. In this study a newly designed and electro-osmotic driven micro-mixer is proposed. This design is comprised of a channel and a series of metal electrodes periodically attached on the side surface. In this configuration electro-osmotic flows and the stirring effects are simulated three-dimensionally using a commercial code, CFD-ACE. Focus is given the effect on the electro-osmotic flow characteristics under the local variation of the electric field.

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Electrochemical Response of Polymer Actuators using Finite Element Formulation and ANSYS/Emag

  • Kang, Sung-Soo
    • Journal of Advanced Marine Engineering and Technology
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    • 제34권3호
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    • pp.369-375
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    • 2010
  • The two-dimensional finite element formulation for the basic field equations governing electrochemical responses of ionic conducting polymer-metal composite(IPMC) actuators is proposed in the present study. Biaxial deformation of a platinum plated Nafion actuator having 4 electrodes is dominated by electro-osmosis of hydrated ions and self-diffusion of free water molecules. Some numerical studies for IPMC actuators with electric field are carried out in order to show the validity of the proposed formulation and electric field analysis for the initial condition of total charge distribution are conducted using commercial code ANSYS/Emag.

Development of Information Biology (II)

  • Tateno, Yoshio
    • Interdisciplinary Bio Central
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    • 제5권2호
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    • pp.4.1-4.3
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    • 2013
  • A history of discoveries of a gene and DNA was viewed with respect to people, time and places. It started with G. Mendel and J. Meisher, who discovered a gene in a plant species in 1866 and DNA in animals in 1869, respectively. With recognition that DNA was a chemical substance, A. Kossel identified the four chemical components of DNA without knowing their biological function around the turn of the 19th century. On the other hand F. Griffith found a peculiar activity in a bacterial species in 1928, but victimized by the war before understanding what it was. Those discoveries were made in Europe, but they were still fragmentary. Then, in USA, O. T. Avery, A. Hershey, M. Nirenberg and other scientists organized the European discoveries and elucidated their coordinated biological functions in 1950's and 1960'.

개념격자를 이용한 온톨로지 오류검출기법 (An Approach for Error Detection in Ontologies Using Concept Lattices)

  • 황석형
    • 한국IT서비스학회지
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    • 제7권3호
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    • pp.271-286
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    • 2008
  • The core of the semantic web is ontology, which supports interoperability among semantic web applications and enables developer to reuse and share domain knowledge. It used a variety of fields such as Information Retrieval, E-commerce, Software Engineering, Artificial Intelligence and Bio-informatics. However, the reality is that various errors might be included in conceptual hierarchy when developing ontologies. Therefore, methodologies and supporting tools are essential to help the developer construct suitable ontologies for the given purposes and to detect and analyze errors in order to verify the inconsistency in the ontologies. In this paper we propose a new approach for ontology error detection based on the Concept Lattices of Formal Concept Analysis. By using the tool that we developed in this research, we can extract core elements from the source code of Ontology and then detect some structural errors based on the concept lattices. The results of this research can be helpful for ontology engineers to support error detection and construction of "well-defined" and "good" ontologies.

An Efficient Biometric Identity Based Signature Scheme

  • Yang, Yang;Hu, Yupu;Zhang, Leyou
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • 제7권8호
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    • pp.2010-2026
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    • 2013
  • The combination of biometrics and cryptography gains a lot of attention from both academic and industry community. The noisy biometric measurement makes traditional identity based cryptosystems unusable. Also the extraction of key from biometric information is difficult. In this paper, we propose an efficient biometric identity based signature scheme (Bio-IBS) that makes use of fuzzy extractor to generate the key from a biometric data of user. The component fuzzy extraction is based on error correction code. We also prove that the security of suggested scheme is reduced to computational Diffie-Hellman (CDH) assumption instead of other strong assumptions. Meanwhile, the comparison with existing schemes shows that efficiency of the system is enhanced.

전자지도를 이용한 3차원 가상공간 구축에 관한 연구 (A Study on Construction of 3D Virtual Space from Digital Map)

  • 성원석
    • 한국안전학회지
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    • 제24권6호
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    • pp.1-6
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    • 2009
  • This study describes a construction procedure of 3D virtual space using the NGIS data and its application to simulation. 3D space topography is modeled by using DEM consisted with triangular regular network. The elevations of nodal points of DEM are calculated through the interpolation with contour line and elevation points from the NGIS. Also, data for 2D roads and their environments, such as trees, lamps, and traffic signals, were extracted from the NGIS and projected on the DEM surfaces to get 3D virtual space. To give a reality to 3D virtual space and accelerate its graphic speed, data were converted into the directX format. It is believed that the virtual space constructed in this work can be applicable to the ubiqutous because DEM data can be converted to the AutoCAD format and ASCII code.

대기중 나노초 펄스레이저 어블레이션의 수치계산 (Numerical simlation of nanosecond pulsed laser ablation in air)

  • 오부국;김동식
    • 한국레이저가공학회지
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    • 제6권3호
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    • pp.37-45
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    • 2003
  • Pulsed laser ablation is important in a variety of engineering applications involving precise removal of materials in laser micromachining and laser treatment of bio-materials. Particularly, detailed numerical simulation of complex laser ablation phenomena in air, taking the interaction between ablation plume and air into account, is required for many practical applications. In this paper, high-power pulsed laser ablation under atmospheric pressure is studied with emphasis on the vaporization model, especially recondensation ratio over the Knudsen layer. Furthermore, parametric studies are carried out to analyze the effect of laser fluence and background pressure on surface ablation and the dynamics of ablation plume. In the numerical calculation, the temperature, pressure, density, and vaporization flux on a solid substrate are obtained by a heat-transfer computation code based on the enthalpy method. The plume dynamics is calculated considering the effect of mass diffusion into the ambient air and plasma shielding. To verify the computation results, experiments for measuring the propagation of a laser induced shock wave are conducted as well.

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순환형 히스토그램 쉬프팅 기반 가역성 DNA 정보은닉 기법 (Reversible DNA Information Hiding based on Circular Histogram Shifting)

  • 이석환;권성근;권기룡
    • 전자공학회논문지
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    • 제53권12호
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    • pp.67-75
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    • 2016
  • DNA 컴퓨팅 기술로 DNA 정보를 매개물로 하는 DNA 저장, DNA 스테가노그라픽, 및 DNA 워터마킹에 대한 관심이 많아지고 있다. 생물학적 변이없이 외부 워터마크를 DNA 정보 내에 은닉에서는 원본 DNA 서열의 복원이 가능하고, 은닉과 복원이 반복적으로 이루어지며, 외부 워터마크에 의한 의도적인 변이 분석이 가능한 가역성 정보은닉 기술이 필요하다. 본 논문에서는 DNA 부호계수의 순환형 히스토그램 다중 쉬프팅 (Circular Histogram Shifting, CHS) 기반으로 생물학적 변이없이 허위개시코돈 방지, 원본 서열 길이 유지, 높은 워터마크 용량성, 블라인드 검출이 가능한 가역성 DNA 정보은닉 방법을 제안한다. 제안한 방법은 비부호 영역 DNA 염기서열을 부호계수로 변환한 다음, 높은 용량성을 위하여 순환형 히스토그램 다중 쉬프팅에 의하여 부호계수에 다중비트를 은닉한다. 마지막으로 다중비트 은닉 과정에서 은닉된 인접 염기서열 간의 비교탐색을 통하여 허위개시코돈 생성을 방지한다. 실험 결과로부터 제안한 방법이 기존 방법보다 0.11~0.50 bpn(bit per nucleotide base) 높은 워터마크 용량성을 가지고, 허위개시코돈이 발생되지 않음을 확인하였다.

SWAT-EFDC 연계 모델링을 통한 입장저수지의 유사 해석 (Modeling Sedimentation Process in Ipjang Reservoir using SWAT and EFDC)

  • 신샛별;황순호;허용구;송정헌;김학관;강문성
    • 한국농공학회논문집
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    • 제60권3호
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    • pp.135-148
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    • 2018
  • Reservoir sedimentation is a major environmental issue, and various sediment load controls and plans have been proposed to secure clean and safe water resources. The objectives of this study were to estimate soil loss in the upper basins and predict sediment deposition in Ipjang reservoir using hydrologic and hydraulic model. To do so, SWAT (Soil and Water Assessment Tool) and EFDC (Environmental Fluid Dynamics Code) was used to estimate soil loss in two upper basins and to predict spatial distribution and amount of sediment deposition in the Ipjang reservoir, respectively. The hydrologic modeling results showed that annual average soil loss from the upper basins was 500 ton. The hydraulic modeling results demonstrated that sediment particles transported to the reservoir were mostly trapped in the vicinity of the reservoir inlet and then moved toward the bank over time. If long-term water quality monitoring and sediment survey are performed, this study can be used as a tool for predicting the dredging amount, dredging location and proper dredging cycle in the reservoir. The study findings are expected to be used as a basis to establish management solutions for sediment reduction.

Modeling Studies of an Exotype Alginate Lyase Atu3025 from Agrobacterium Tumefaciens Strain C58, a Member of Polysaccharide Lyase Family 15

  • ;조승주
    • 통합자연과학논문집
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    • 제3권2호
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    • pp.72-77
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    • 2010
  • Alginate lyases, also known as alginases or alginate depolymerases, catalyze the degradation of alginate by a ${\beta}$-elimination mechanism that has yet to be fully elucidated. Alginate is a copolymer of ${\alpha}$-L-guluronate (G) and its C5 epimer ${\beta}$-D-mannuronate (M), arranged as homopolymeric G blocks, M blocks, alternating GM or random heteropolymeric G/M stretches. Almost all alginate lyases depolymerize alginate in an endolytical fashion via a ${\beta}$-elimination reaction. The alginate lyase Atu3025 from Agrobacterium tumefaciens strain C58, consisting of 776 amino-acid residues, is a novel exotype alginate lyase classified into polysaccharide lyase family 15. Till now there is no crystal structure available for this class of proteins. Since there is no template with high sequence identity, three-dimensional coordinates for exotype alginate lyase (PL 15 family) were determined using modeling methods (Comparitive modeling and Fold recognition). The structures were modeled using the X-ray coordinates from Heparinase protein family (PDB code: 3E7J). This enzyme (Atu3025) displays enzymatic activity for both poly-M and poly-G alginate. Since poly-M is widespread; docking of a tri-mannuronate against the modeled structure was performed. We identified some of those residues which are crucial for lyase activity. The results from this study should guide future mutagenesis studies and also provides a starting point for further proceedings.