• Title/Summary/Keyword: Backbone

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$^{15}N$ NMR Relaxation Studies of Backbone Motion of the catalytic Residues in Free and Steroid-bound ${\Delta}^5$-3-Ketosteroid Isomerase

  • Lee, Hee-Cheon;Sunggoo Yun
    • Journal of the Korean Magnetic Resonance Society
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    • v.5 no.2
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    • pp.130-137
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    • 2001
  • Backbone dynamics of the catalytic residues in free and steroid-bound $\Delta$$^{5}$ -3- ketosteroid isomerase from Pseudomonas testosteroni has been examined by $^{15}$ N relaxation measurements. The relaxation data were analyzed using the model-free formalism to extract the model-free parameters (S$^2$, $\tau$$_{e}$, and R$_{ex}$). Tyr-34 and Asp-99 exhibit enhanced high-frequency (pico- to nanosecond) internal motions in the free enzyme, which are restricted upon ligand binding, while Asp-38 experiences severe restriction of the internal motions in the fee enzyme, suggesting that Tyr-14 and Asp-99 are more actively involved in the ligand binding than Asp-38. The results also indicate that the H-bond network in the catalytic cavity might be slightly strengthened upon ligand binding, which may have some implications on the enzyme mechanism.he enzyme mechanism.m.

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$^{13}C$ Spin-Lattice Relaxation Study of Segmental Motions in n-alkanes: n-Undecane and n-Dodecane

  • Min, Buem-Chan;Lee, Jo-Woong
    • Journal of the Korean Magnetic Resonance Society
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    • v.2 no.1
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    • pp.1-23
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    • 1998
  • The motions of carbon-chain backbone in n-undecance and n-dodecane dissolved in CDCl3 are investigated by 13C NMR relaxation study. For this purpose a model of C - C backbone motions for these molecules is introduced that takes into account the cooperativities between rotations about two $\beta$-coupled C - C bonds. In this model it is assumed that the major conformational interconversions occurring in the inner part of the chain involve the type II jumps only, although at terminal part of the chain both type II and type III motions are assumed to take place. Information of the rate constants of these conformational transitions could be extracted by comparing the T1's calculated on the basis of the assumed model with those observed over the temperature range of 248 - 308 K. The calculations were performed according to the method proposed by Wittebort and Szabo. The activation energies, ranging from ca 12 to 20 kJ/mol, could be obtained from the Arrhenius plots of these calculated rate constants.

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Control of Pierce's Disease through Degradation of Xanthan Gum

  • Lee, Seung-Don;Donald A. Cooksey
    • The Plant Pathology Journal
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    • v.20 no.1
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    • pp.1-6
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    • 2004
  • The diseases caused by Xylella fastidiosa are associated with aggregation of the bacteria m xylem vessels, formation of a gummy matrix and subsequent blockage of water uptake. In the closely related pathogen, Xanthomonas campestris, xanthan gum is known to be an important virulence factor, probably contributing to bacterial adhesion, aggregation and plugging of xylem. Xanthan gum, produced by X. campestris, is an extra-cellular polysaccharide consisting of a cellulose backbone ($\bate$-1,4-linked D-glucose) with trisaccharide side chains composed of mannose, glucuronic acid and mannose attached to alternate glucose residues in the backbone. We had constructed a mutant of X. campestris lacking gumI gene that is responsible for adding the terminal mannose for producing modified xanthan gum which is similar to xanthan gum fromX. fastidiosa. The modified xanthan gum degrading endgphytic bacterium Acineto-bacter johnsonii GX123 isolated from the oleander infected with leaf scorch disease.

Shape Finding of Bio-Tensegrity Structural System (바이오텐세그리티 구조 시스템의 형상 결정)

  • Yang, Dae-Hyeon;Kim, Mi-Hee;Kang, Joo-Won;Kim, Jae-Yeol
    • Journal of Korean Association for Spatial Structures
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    • v.18 no.2
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    • pp.25-34
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    • 2018
  • This study investigated a bio-tensegrity structural system that combines the characteristics of a general tensegrity structural system with a biological system. The final research objective is to accomplish a changeability for the structural system as like the movement of the natural bio-system. In the study, we present a shape finding procedure for the two stage bio-tensegrity system model inspired by the movement pattern of animal backbone. The proposed system is allowing a dynamic movement by introducing the concept of "saddle" for the variable bio-tensegrity structure. Several shape finding analysis example and results are presented and shows a efficient validation and suitability.

Synthesis and Photoisomerization Properties of Polynorbornenes with Azobenzene Chromophores

  • Kang, Suk-Hoon;Shin, Hee-Deuk;Oh, Cha-Hwan;Choi, Dong-Hoon;Park, Ki-Hong
    • Bulletin of the Korean Chemical Society
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    • v.23 no.7
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    • pp.957-963
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    • 2002
  • We successfully synthesized the addition-type polynorbonenes (PNB) exhibiting photochromic properties and excellent thermal stability. Three norbornene-based monomers with different azobenzene moiety (R=NO2, H,OCH3) were synthesized by transesterification method. The corresponding PNB copolymers were synthesized by transition metal-catalyzed addition polymerization method, and characterized by GPC, UV-Vis spectroscopy, NMR, and thermal analysis. For comparison of the photochromic properties depending on the rigidity of polymer backbone, we prepared the polymethylmethacrylate (PMMA) copolymer with the corresponding azobenzene moiety. We investigated the photoisomerization behavior by means of optical muitichannel analyzer with Xe lamp as well as real-time UV-Vis spectroscopy with high-pressure mercury lamp. Among three PNB copolymers, a polymer with azobenzene (R=H) was the most adaptable for observation of photoisomerization behavior. It was found that the rate of photoisomerization and relaxation depended on the structure of azobenzene chromophore, rather than that of polymer backbone.

Studies of Graft Polymers (I). Graft Site Distribution of Anionic Polymer (고분자 결합에 관한 연구 (제1보). Anionic Polymer의 Graft Site 분포)

  • Chul Yung Cha
    • Journal of the Korean Chemical Society
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    • v.20 no.4
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    • pp.251-259
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    • 1976
  • Graft site distribution of graft polymer was derived from a statistical model. Theoretical model was experimentally confirmed by preparing well defined graft polymer and using gel permeation chromatography(GPC). The results indicate that metalation of substrate polymer is statistically random process and anionic graft reaction products consist of ungrafted free side chain homopolymer; graft polymer with different number of graft chains and free backbone molecules when the averaged in the graft sites are small.

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Optimal Operations of the Virtual Link System in Hierarchical Link-State Routing: A Multi-Criteria Genetic Algorithm Approach (계층화된 링크 - 상태 인터넷 라우팅에서 가상 링크 운용 최적화를 위한 다기준 유전자 알고리즘의 응용)

  • Kim, Do-Hoon
    • IE interfaces
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    • v.16 no.spc
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    • pp.14-20
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    • 2003
  • This paper presents a multi-criteria decision model and Multi-Criteria Generic Algorithm(MCGA) approach to improve backbone topology by leveraging the Virtual Link(VL) system in an hierarchical Link-State(LS) routing domain. Given that the sound backbone topology structure has a great impact on the overall routing performance in an hierarchical LS domain, the importance of this research is evident. The proposed decision model is to find an optimal configuration of VLs that properly meets two-pronged engineering goals in installing and maintaining VLs: i.e., operational costs and network reliability. The experiment results clearly indicates that it is essential to the effective operations of hierarchical LS routing domain to consider not only engineering aspects but also specific benefits from systematical layout of VLs, thereby presenting the validity of the decision model and MCGA.

The Performance Analysis for the New Architecture of DWDM Network

  • Lee, Dong-Sun
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.33 no.6B
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    • pp.395-402
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    • 2008
  • Aggregate bandwidth required by the internet is expected to be explosively increased. To meet this anticipated need, an ultra high speed internet backbone transport network, capable of supporting up to a Tbps traffic capacity, is required. this thesis examines, through computer simulation and modeling, the technological requirements and assesses the performance analysis and feasibility for implementing ultra-high speed NGI backbone transport network fabric based on WDM technology. The study results are that C/L band EDFA spectral gains for ultra high speed DWDM have been improved from 2.61dB/1.5386dB to 0.03dB/0.096dB by proposed architecture.

A Distributed Web-Topology for the Wireless Mesh Network with Directional Antennas

  • Ranjitkar, Arun;Ko, Young-Bae
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.5 no.1
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    • pp.191-210
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    • 2011
  • Topology management, which includes neighbor discovery, tracking and updating, is a key area that need to be dealt with appropriately to increase network performance. The use of directional antenna in Wireless Mesh Networks is beneficial in constructing backbone networks viewing the properties of directional antenna. The backbone links must be robust to obtain better network performance. In this paper, a simple yet effective topology protocol is presented that performs well compared to its predecessors. Our protocol constructs the topology with the constraints in the number of links per node. The full topology is constructed in two phases. The resultant topology is termed as Web-topology. The topology formed is robust, efficient, and scalable.

Catalytic Cyclopolymerization and Copolymerization of Diethyl Dipropargylmalonate by (toluene)Mo$(CO)_3

  • Jeon, Sang Jin;Sim, Sang Cheol;Jo, Chan Sik;Kim, Tae Jeong;Gal, Yeong Sun
    • Bulletin of the Korean Chemical Society
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    • v.21 no.10
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    • pp.1044-1046
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    • 2000
  • Catalytic copolymerization of diethyl dipropargylmalonate (DEDPM) and phenylacetylene (PA) by Mo(CO)6 and (toluene) Mo(CO)3/chloranil has resulted in the expected copolymer consiting of a polyene backbone with five-and/or six-membered rings and th e PPA structure. Both complexes exhibited not only varying degree of catalytic activity depending upon the relative mole ratio of two monomers but also characterize the types of coploymers. The former yields the polyene backbone containing only five-membered rings as well as PA while the latter produces the polymers consisting of both five-and six-membered ring structure. Comparative studies show that Mo(CO)6 exhibits reactivity toward DEDPM alone, thus catalyzing initially metathesis cyclopoly-merization of DEDPM followed by copolymerization with PA while the (toluene)Mo(CO)3/chloranil system shows affinity for both PA and DEDPM.