• Title/Summary/Keyword: Autocatalytic

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A Clue for Prebiotic Era: Cross-Catalytic Replication of an RNA Ligase Ribozyme

  • Kim Dong-Eun;Joyce Gerald F.
    • Proceedings of the Korean Society of Life Science Conference
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    • 2004.10a
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    • pp.22-26
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    • 2004
  • A self-replicating RNA ligase ribozyme was converted to a cross-catalytic format whereby two ribozymes direct each other's synthesis from a total of four component substrates. Each ribozyme binds two RNA substrates and catalyzes their ligation to form the opposing ribozyme. The two ribozymes are not perfectly complementary, as is the case for replicating nucleic acid genomes in biology. Rather, the ribozymes contain both template elements, which are complementary, and catalytic elements, which are identical. The specificity of the template interactions allows the cross-catalytic pathway to dominate over all other reaction pathways. In the presence of $2{\mu}M$ each of the corresponding substrates, one ribozyme catalyzes the synthesis of the second ribozyme with an initial rate of $6.8{\times}10^{-3}\;min^{-1}$, while the second ribozyme catalyzes the synthesis of the first with an initial rate of $2.9{\times}10^{-3}min{-1}$. As the concentration of the two ribozymes increases, the rate of formation of additional ribozyme molecules increases, consistent with the overall autocatalytic behavior of the reaction system. Here, I present results that possibly demonstrate a clue for a self-replicating molecule by showing an RNA ligase ribozyme, which is reminiscent of 'Prebiotic Era'.

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Hyperbolic Reaction-Diffusion Equation for a Reversible Brusselator: Solution by a Spectral Method

  • 이일희;김광연;조웅인
    • Bulletin of the Korean Chemical Society
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    • v.20 no.1
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    • pp.35-41
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    • 1999
  • Stability characteristics of hyperbolic reaction-diffusion equations with a reversible Brusselator model are investigated as an extension of the previous work. Intensive stability analysis is performed for three important parameters, Nrd, β and Dx, where Nrd is the reaction-diffusion number which is a measure of hyperbolicity, β is a measure of reversibility of autocatalytic reaction and Dx is a diffusion coefficient of intermediate X. Especially, the dependence on Nrd of stability exhibits some interesting features, such as hyperbolicity in the small Nrd region and parabolicity in the large Nrd region. The hyperbolic reaction-diffusion equations are solved numerically by a spectral method which is modified and adjusted to hyperbolic partial differential equations. The numerical method gives good accuracy and efficiency even in a stiff region in the case of small Nrd, and it can be extended to a two-dimensional system. Four types of solution, spatially homogeneous, spatially oscillatory, spatio-temporally oscillatory and chaotic can be obtained. Entropy productions for reaction are also calculated to get some crucial information related to the bifurcation of the system. At the bifurcation point, entropy production changes discontinuously and it shows that different structures of the system have different modes in the dissipative process required to maintain the structure of the system. But it appears that magnitude of entropy production in each structure give no important information related for states of system itself.

Changes in flavor-relevant compounds during vine ripening of tomato fruit and their relationship with ethylene production

  • Wang, Libin;Luo, Weiqi;Sun, Xiuxiu;Qian, Chunlu
    • Horticulture, Environment, and Biotechnology : HEB
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    • v.59 no.6
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    • pp.787-804
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    • 2018
  • Flavor quality is import for determining consumer perception and acceptance of tomato products. In this study, 'Fendou' tomato fruit were harvested at six ripening stages and sampled to investigate the development of flavor-relevant compounds during vine ripening. Results showed that upon the initiation of ripening there was an increase in respiration rate and concomitant ethylene evolution that was associated with increased membrane permeability. In accordance with these physiological changes, flavor-relevant compounds demonstrated different expression patterns as fruit ripened, which contributed to 'red-ripe' flavor characteristics of red-ripe fruit. Based on correlation analysis between ethylene evolution and the flavor-relevant compounds during 'Fendou' tomato ripening and the other researchers' reports, the activation of System 2-dependent autocatalytic ethylene production plays an important role in the development of most flavor-relevant compounds during tomato vine ripening. Overall, our results suggested that most flavor-relevant compounds that accumulated the most during tomato fruit ripening at red stage could be under ethylene regulation and were among the most important contributors to the 'red-ripe' flavor. Due to the development of these compounds, the flavor quality at late ripening stages is different from that of fruit at early ripening stages.

Adiabatic Analysis of 1180MPa Advanced High Strength Steel by Impact Weight (충격하중에 의한 1180MPa급 초고강도강의 단열해석)

  • Kim, Kun-Woo;Lee, Jae-Wook;Yang, Min-Seok;Lee, Seong-Yeop;Kim, Da-Hye;Lee, Jae-Jin;Mun, Ji-Hoon;Park, Ji-Won
    • Journal of the Korean Society of Manufacturing Process Engineers
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    • v.21 no.8
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    • pp.93-98
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    • 2022
  • Adiabatic blanking is a method to improve productivity through an autocatalytic cycle that occurs repeatedly through plastic deformation and thermal softening caused by impact energy. In this study, an axisymmetric analysis model comprising a punch, die, holder, and specimen was developed to confirm the temperature and deformation characteristics caused by an impact load. Through this, the impact energy, diameter of the punch, gap between the punch and die, and the effect of the fillet were analyzed. Because this process occurs in a very short time, adiabatic analysis can be performed using the explicit time-integration method. The analysis, confirmed that it is necessary to design a structure capable of increasing the local temperature and plastic deformation by controlling the impact energy, working area, gap, and the fillet.

Evaluation of hydrogen recombination characteristics of a PAR using SPARC PAR experimental results

  • Jongtae Kim;Jaehoon Jung
    • Nuclear Engineering and Technology
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    • v.55 no.12
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    • pp.4382-4394
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    • 2023
  • Passive auto-catalytic recombiners (PARs) are widely used to mitigate a hydrogen hazard. The first step to evaluate the hydrogen safety by PARs is to obtain qualified test data of the PARs for validation of their analytical model. SPARC PAR tests SP8 and SP9 were conducted to evaluate the hydrogen recombination characteristics of a honeycomb-shaped catalyst PAR. To obtain the hydrogen recombination rate from the PAR test data, two methods, Method-1 and Method-2, introduced by the THAI project, were applied. Since a large gradient of hydrogen concentration developed during hydrogen injection can cause a large error in the hydrogen mass obtained by integrating the measured hydrogen concentrations, a gate was installed at the PAR inlet to homogenize hydrogen in the test vessel before the PAR operation in the tests. A computational fluid dynamics (CFD) code with a PAR model was also applied to evaluate the characteristics of the PAR recombination according to the PAR inlet conditions, and the results were compared with those from Method-1 and Method-2. It was confirmed that the recombination rates from Method-1 require a correction factor to be compatible with results from Method-2 and the CFD simulation in the case of the SPARC-PAR tests.

A Study on Electroless Palladium Layer Characteristics and Its Diffusion in the Electroless Palladium Immersion Gold (EPIG) Surface Treatment for Fine Pitch Flip Chip Package (미세피치 플립칩 패키지 구현을 위한 EPIG 표면처리에서의 무전해 팔라듐 피막특성 및 확산에 관한 연구)

  • Hur, Jin-Young;Lee, Chang-Myeon;Koo, Seok-Bon;Jeon, Jun-Mi;Lee, Hong-Kee
    • Journal of the Korean institute of surface engineering
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    • v.50 no.3
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    • pp.170-176
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    • 2017
  • EPIG (Electroless Pd/immersion Au) process was studied to replace ENIG (electroless Ni/immersion Au) and ENEPIG (electroless Ni/electroless Pd/immersion Au) processes for bump surface treatment used in high reliable flip chip packages. The palladium and gold layers formed by EPIG process were uniform with thickness of 125 nm and 34.5 nm, respectively. EPAG (Electroless Pd/autocatalytic Au) also produced even layers of palladium and gold with the thickness of 115 nm and 100 nm. TEM results exhibited that the gold layer in EPIG surface had crystalline structure while the palladium layer was amorphous one. After annealing at 250 nm, XPS analysis indicated that the palladium layer with thickness more than 22~33 nm could act as a diffusion barrier of copper interconnects. As a result of comparing the chip shear strength obtained from ENIG and EPIG surfaces, it was confirmed that the bonding strength was similar each other as 12.337 kg and 12.330 kg, respectively.

NUMERICAL ANALYSIS OF THE HYDROGEN-STEAM BEHAVIOR IN THE APR1400 CONTAINMENT DURING A HYPOTHETICAL TOTAL LOSS OF FEED WATER ACCIDENT (APR1400의 급수완전상실사고 시 격납건물 내에서 수소와 수증기의 3차원 거동에 대한 수치해석)

  • Kim Jongtae;Hong Seong-Wan;Kim Sang-Baik;Kim Hee-Dong
    • Journal of computational fluids engineering
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    • v.10 no.3 s.30
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    • pp.9-18
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    • 2005
  • During a hypothetical severe accident in a nuclear power plant (NPP), hydrogen is generated by the active reaction of fuel-cladding and steam in the reactor pressure vessel and released with steam into the containment. In order to mitigate hydrogen hazards possibly occurred in the NPP containment, hydrogen mitigation system (HMS) is usually adopted. The design of the next generation NPP (APR1400) designed in Korea specifies 26 passive autocatalytic recombiners and 10 igniters installed in the containment for the hydrogen mitigation. in this study, the analysis of the hydrogen and steam behavior during a total lose of feed water (TLOFW) accident in the APR1400 containment has been conducted by using the CFD code GASFLOW. During the accident, a huge amount of hot water, steam, and hydrogen is released in the in-containment refueling water storage tank (IRWST). The current design of the APR1400 includes flap-type dampers at the IRWST vents which are operated depending on the pressure difference between inside and outside of the IRWST. it was found that the flaps strongly affects the flow structure of the steam and hydrogen in the containment. The possibilities of a flame acceleration and transition from deflagration to detonation (DDT) were evaluated by using Sigma-Lambda criteria. Numerical results indicate the DDT possibility could be heavily reduced in the IRWST compartment when the flaps are installed.

The Effects of 3-(3,4-dichloro phenyl)-1,1-dimethylurea on the Cure of Epoxy/Dicyandiamide System (3-(3,4-dichloro phenyl)-1,1-dimethylurea이 Epoxy/Dicyandiamide계의 경화에 미치는 영향)

  • Kim, Hyung-Soon;Kim, Wan-Young;Kim, Young-Ja
    • Applied Chemistry for Engineering
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    • v.7 no.5
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    • pp.963-969
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    • 1996
  • Cure characteristics of DGEBA(diglycidyl ether of bisphenol A)/dicy(dicyandiamide) system containing diuron(3-(3,4-dichloro phenyl) -1,1-dimethylurea) as an accelerator was investigated. The system has shelf life of six months because dicy is insoluble in liquid/solid resins at room temperature. It is generally known that dicy is an adequate curing agent for one component adhesive due to its highly latent property. With increasing the amount of added dicy, reaction heat of DGEBA/dicy system increased and degree of conversion was not varied. For DGEBA/dicy/diuron system, cure temperature decreased about $40^{\circ}C$ and cure reaction became fast by the addition of diuron which activates dicy. $T_g$ of the mixed resin decreased with the amount of accelerator. which was interpreated with molecular structure forming loose chain. Cure kinetics of DGEBA/dicy and DGEBA/dicy/diuron system were explained using Kamal's autocatalytic reaction model. The effect of acceleration was confirmed with that reaction model.

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The study of manganese removal mechanism in aeration-sand filtration process for treating bank filtered water (강변여과수 처리를 위한 포기-모래여과공정에서 망간제거 기작에 관한 연구)

  • Choi, Seung-Chul;Kim, Se-Hwan;Yang, Hae-Jin;Lim, Jae-Lim;Wang, Chang-Keun;Jung, Kwan-Sue
    • Journal of Korean Society of Water and Wastewater
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    • v.24 no.3
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    • pp.341-349
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    • 2010
  • It is well known that manganese is hard to oxidize under neutral pH condition in the atmosphere while iron can be easily oxidized to insoluble iron oxide. The purpose of this study is to identify removal mechanism of manganese in the D water treatment plant where is treating bank filtered water in aeration and rapid sand filtration. Average concentration of iron and manganese in bank filtered water were 5.9 mg/L and 3.6 mg/L in 2008, respectively. However, their concentration in rapid sand filtrate were only 0.11 mg/L and 0.03 mg/L, respectively. Most of the sand was coated with black colored manganese oxide except surface layer. According to EDX analysis of sand which was collected in different depth of sand filter, the content of i ron in the upper part sand was relatively higher than that in the lower part. while manganese content increased with a depth. The presence of iron and manganese oxidizing bacteria have been identified in sand of rapid sand filtration. It is supposed that these bacteria contributed some to remove iron and manganese in rapid sand filter. In conclusion, manganese has been simultaneously removed by physicochemical reaction and biological reaction. However, it is considered that the former reaction is dominant than the latter. That is, Mn(II) ion is rapidly adsorbed on ${\gamma}$-FeOOH which is intermediate iron oxidant and then adsorbed Mn(II) ion is oxidized to insoluble manganese oxide. In addition, manganese oxidation is accelerated by autocatalytic reaction of manganese oxide. The iron and manganese oxides deposited on the surface of the sand and then are aged with coating sand surface.

Photopolymerization of Reactive Oligomers and Methacrylate/SBS Blends (반응성 올리고머 및 메타아크릴레이트/SBS 블렌드의 광중합)

  • 최영선;류봉기
    • Polymer(Korea)
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    • v.27 no.5
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    • pp.421-428
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    • 2003
  • The kinetics of photoinitiated polymerization of reactive oligomer methacrylates and oligomer methacrylate/SBS blends have been studied to characterize the diffusion-controlled reaction using Fourier Transform Infrared Spectroscopy-Attenuated Total Reflectance (ATR-FTIR). The polymerization rates of reactive oligomer methacrylates and oligomer methacrylate/SBS blends were autocatalytic in nature at the initial stage and then a retardation of the reaction conversion occurred gradually as the polymer matrix became vitrified, and finally the reaction became diffusion controlled. Photopolymerization behavior of methacrylate/SBS blends was well predicted using the diffusion-controlled reaction model. N-Vinyl-2-pyrrolidinone (NVP) as a reactive solvent was used to incorporate SBS into methacrylate to form semi-IPN via photopolymerization. Due to the high reactivity of NVP, polymerization rate increased with the increase of NVP content. As the content of NVP-SBS in the blends increased up to 10 phr, the reaction conversion maintained almost constant. But above 20 phr of NVP-SBS in the blends, the reaction conversion gradually decreased since the increase of viscosity affected on the photopolymerization rate. The semi-IPN films of methacrylate/SBS blends were transparent at room temperature as well as at increased temperature and were able to be applied to surface coating.