• Title/Summary/Keyword: ARID1A

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Mutational Analysis of Extranodal NK/T-Cell Lymphoma Using Targeted Sequencing with a Comprehensive Cancer Panel

  • Choi, Seungkyu;Go, Jai Hyang;Kim, Eun Kyung;Lee, Hojung;Lee, Won Mi;Cho, Chun-Sung;Han, Kyudong
    • Genomics & Informatics
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    • 제14권3호
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    • pp.78-84
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    • 2016
  • Extranodal natural killer (NK)/T-cell lymphoma, nasal type (NKTCL), is a malignant disorder of cytotoxic lymphocytes of NK or T cells. It is an aggressive neoplasm with a very poor prognosis. Although extranodal NKTCL reportedly has a strong association with Epstein-Barr virus, the molecular pathogenesis of NKTCL has been unexplored. The recent technological advancements in next-generation sequencing (NGS) have made DNA sequencing cost- and time-effective, with more reliable results. Using the Ion Proton Comprehensive Cancer Panel, we sequenced 409 cancer-related genes to identify somatic mutations in five NKTCL tissue samples. The sequencing analysis detected 25 mutations in 21 genes. Among them, KMT2D, a histone modification-related gene, was the most frequently mutated gene (four of the five cases). This result was consistent with recent NGS studies that have suggested KMT2D as a novel driver gene in NKTCL. Mutations were also found in ARID1A, a chromatin remodeling gene, and TP53, which also recurred in recent NGS studies. We also found mutations in 18 novel candidate genes, with molecular functions that were potentially implicated in cancer development. We suggest that these genes may result in multiple oncogenic events and may be used as potential bio-markers of NKTCL in the future.

Occurrence of Mycotoxins and Toxigenic Fungi in Groundnut (Arachis hypogaea L.) Seeds in Andhra Pradesh, India

  • Kishore, G.Krishna;Pande, S.;Manjula, K.;Rao, J.Narayana;Thomas, D.
    • The Plant Pathology Journal
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    • 제18권4호
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    • pp.204-209
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    • 2002
  • Andhra Pradesh is one of the major groundnut growing states in India. A total of 182 groundnut samples collected at harvesting from farmers fields in five districts, namely; Anantapur, Chittoor, Cuddapah, Kurnool, and Mahaboobnagar, during 1999 and 2000 rainy seasons were evaluated for the presence of mycotoxins (both aflatoxins and zearalenone) and toxigenic fungi. In samples collected from each district, average seed infection by Aspergillus flavus and Fusarium spp. was 11.9-18.3% and 5.6-12.8% in 1999, and 9.5-14.1% and 9.4-11.9% in 2000, respectively. Among the samples collected, 20.3% and 16.5% were contaminated with aflatoxin in 1999 and 2000, respectively, and in 11.4% and 8.7% of the seed samples collected in two seasons, the aflatoxin content was >30 $\mu\textrm{g}$/kg. An alarming aflatoxin content of 851.9$\mu\textrm{g}$/kg was found in samples collected from Anantapur district during the rainy season in 1999. Zearalenone was not detected in any of the samples collected in 1999, while 2 out of 103 samples collected in 2000 were contaminated with 35.1 and 129.4$\mu\textrm{g}$/kg. Under in vitro cultural conditions, 35.8% of the 173 A. flavus isolates collected from the groundnut samples produced aflatoxins at concentrations of 94.3-1598.6 ng/$\textrm{m}{\ell}$ and 3% of the 266 Fusarium spp. isolates produced 98.1-847.3 $\mu\textrm{g}$/g of zearalenone. The results emphasize the need for a more systematic and regular monitoring of pre-harvest aflatoxin contamination.

Comparative field tests on uplift behavior of straight-sided and belled shafts in loess under an arid environment

  • Qian, Zeng-zhen;Lu, Xian-long;Yang, Wen-zhi;Cui, Qiang
    • Geomechanics and Engineering
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    • 제11권1호
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    • pp.141-160
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    • 2016
  • This study elucidates the uplift behaviors of the straight-sided and belled shafts. The field uplift load tests were carried out on 18 straight-sided and 15 belled shafts at the three collapsible loess sites under an arid environment on the Loess Plateau in Northwest China. Both the site conditions and the load tests were documented comprehensively. In general, the uplift load-displacement curves of the straight-sided and belled shafts approximately exhibited an initial linear, a curvilinear transition, and a final linear region, but did not provide a well defined peak or asymptotic value of the load, and therefore their uplift resistances should be interpreted from the load test results using an appropriate criterion. Nine representative uplift resistance interpretation criteria were used to define the "interpreted failure load" for each of the load tests, and all of these interpreted uplift resistances were normalized by the failure threshold, $T_{L2}$, obtained using the $L_1-L_2$ method. These load test data were compared statistically and graphically. For the straight-sided and belled shafts, the normalized uplift load-displacement curves were respectively established by the plots that related the mean interpreted uplift resistance ratio against the mean displacement at the corresponding interpreted criteria, and the comparisons of the normalized load-displacement curves were made. Specific recommendations for the designs of uplift belled and straight-sided shafts in the loess were given, in terms of both capacity and displacement.

Improving Technologies for the Future Development of Pistachio Plantations in Tajikistan

  • Khuseinov Saidshokh;Jieun Ahn;Nam Jin Noh;Yowhan Son
    • Journal of Forest and Environmental Science
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    • 제40권2호
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    • pp.73-81
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    • 2024
  • As a phreatophyte, pistachio (Pistacia vera L.) is widely grown in water-limited conditions and recognized as an economically valuable crop in semi-arid regions. In Tajikistan, pistachio grows naturally and artificially in 79,000 ha, but the nut yield is very low due to less-developed plantation technologies. In this study, differences in pistachio plantation technologies of the major pistachio-producing countries and Tajikistan were analyzed to suggest ways to improve plantation technologies in Tajikistan. In the major pistachio-producing countries such as Iran, the United States and Turkey, seedlings of high nut-yielding varieties are grafted before planting. As a result, annually 349-4,479 kg ha-1 of nuts are harvested in those countries. On the other hand, Tajikistan annually produces only 0.6-3.7 kg ha-1. While seven suitable high nut-yielding varieties (Albina, Dangarinka, Saboh, Green girl, Mountain pearl, October, and Orzu) have been identified as suitable for Tajikistan's environment, the plantation area with grafted individuals using these varieties is limited to only 1.5 ha, necessitating widespread adoption. The low utilization of the high nut-yielding varieties is attributed to the lack of grafting specialists and skills, which have hindered increasing pistachio nut production in Tajikistan. Therefore, improving the basic capability of pistachio grafting should be prioritized to expand the economic profits from the pistachio forests in Tajikistan.

중국 건조지역에서 시비와 보수제 처리에 의한 신강포플러의 생장 및 묘목의 양분 함량 변화 (Changes in Growth and Nutrient Contents of Populus ablba var. pyramidalis treated with Fertilizers and Absorbents in an Arid Region of China)

  • 경지현;손요환;노남진;이명종;이천용;윤호중
    • 한국산림과학회지
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    • 제95권6호
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    • pp.751-758
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    • 2006
  • 중국 건조지역에서 임목 생장을 촉진시키기 위한 토양 개선 방안을 모색하기 위하여 내몽골 자치구 내 Dengkou지역에 묘포장과 방풍림을 조성한 다음 신강포플러(Populus alba var. pyramidalis) 묘목을 식재하고, 시비(질소, 인) 및 보수제(인공보수제; K-SAM, 자연보수제 Yuho(Artemisia ordosica))를 처리하였다. 처리 후 1년 6개월이 지난 다음 묘고, 흉고직경, 생체량, 그리고 묘목 내 질소와 인의 농도 등을 측정하였다. 묘포장과 방풍림 내 토양은 사양토와 식양토로 분류되었고, pH는 8.78과 8.51로 약알칼리성을 띠었으며, 전질소 농도는 각각 0.06%와 0.08%로 나타났다. 묘포장과 방풍림에서 일반적으로 질소(N) 처리 후 무처리나 다른 처리보다 묘고 및 흉고직경 생장이 증가되었으며, 특히 방풍림의 경우 인공 및 자연보수제 처리 후 생장이 증가되었다. 묘포장에서 질소와 인(N+P) 복합 시비 후 지상부와 지하부를 합한 총 생체량이 증가되었다. 질소나 인의 시비가 묘목 내 이들 양분 농도에 미치는 영향은 묘포장에서 뚜렷하지 않았으나, 방풍림에서는 질소 시비 후 잎 대 질소 농도가 크게 증가하여 토양 내 질소가 결핍된 상태를 보였다. 건조지역에서 신강포플러 묘목의 초기 생장에 질소가 가장 큰 영향을 미치며, 인공보수제인 K-SAM과 자연보수제인 Yuho도 묘목의 생장을 증가시켜 이들을 향후 토양 조건 개선에 활용할 수 있을 것으로 보인다.

Evaluation of raw wastewater characteristic and effluent quality in Kashan Wastewater Treatment Plant

  • Dehghani, Rouhullah;Miranzadeh, Mohammad Bagher;Tehrani, Ashraf Mazaheri;Akbari, Hossein;Iranshahi, Leila;Zeraatkar, Abbas
    • Membrane and Water Treatment
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    • 제9권4호
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    • pp.273-278
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    • 2018
  • Due to the lack of water in arid and semi-arid areas, reuse of wastewater can be a suitable way to compensate for water scarcity. Therefore, in this research, evaluation of the quality of wastewater of Kashan Treatment Plant to use for irrigation was studied. This descriptive cross-sectional study was conducted in 2016. pH, TSS, TDS, turbidity, COD, BOD5, Total Kjeldahl Nitrogen, Total Phosphorus, Total Coliform, fecal coliform, nematode eggs of inlet and outlet of wastewater treatment plant in Kashan were studied. Mean and standard deviation and wastewater quality parameters before and after treatment were tested with SPSS 22 (2014) software. The mean wastewater output of COD, BOD5, TSS, TDS and turbidity were respectively 86.6, 41.2, 11.11, 1095 mgL-1 and 17.5 NTU and the pH was equal to 7.22. Also, the average of Total Kjeldahl Nitrogen and phosphorus were 22.4 and 2.2 mgL-1 respectively. The mean of Total Coliform and fecal coliform were 225, 161 MPN / 100 ml respectively. In addition, no nematode eggs were found in final effluent. The results indicated that the treatment plants had a significant role in the control of microbial and organic pollution load of wastewater. Also, it is concluded that all parameters were in accordance with the standards of Iran's Department of Environment, so, it can be used for unrestricted irrigation.

분할 루팅이 허용되는 링의 용량결정문제에 대한 개선된 해법 (A Faster Algorithm for the Ring Loading problem with Demand Splitting)

  • 명영수;김후곤
    • 한국경영과학회지
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    • 제26권4호
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    • pp.99-108
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    • 2001
  • In the ring loading problem with demand splitting, traffic demands are given for each pall of nodes in an undirected ring network and a flow is routed in either of the two directions, clockwise and counter-clockwise. The load of a link is the sum of the flows routed through the link and the objective of the problem is to minimize the maximum load on the ring. The fastest a1gorithm to date is Myung, Kim and Tcha's a1gorithm that runs in Ο(n|K|) time where n is the number of nodes and K is the index set of the origin-destination pairs of nodes having flow traffic demands. Here we develop an a1gorithm for the ring loading problem with demand splitting that improves the rerouting step of Myung, Kim and Tcha's a1gorithm arid runs in Ο(min{n|K|, n$^2$}) time.

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PHYSIOLOGICAL RESPONSES, FEED INTAKE, URINE VOLUME AND SERUM OSMOLALITY OF AARDI GOATS DEPRIVED OF WATER DURING SPRING AND SUMMER

  • El-Nouty, F.D.;Al-Haidary, A.A.;Basmaeil, S.M.
    • Asian-Australasian Journal of Animal Sciences
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    • 제3권4호
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    • pp.331-336
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    • 1990
  • In order to evaluate the adaptability of Aardi goats to arid environment, 5 Aardi bucks were deprived of water for four days during spring and summer seasons. The rise in average maximum ambient temperature from $24.8^{\circ}C$ in spring to $35.8^{\circ}C$ in summer caused a significant rise in rectal temperature ($0.3^{\circ}C$), respiratory rate (62%), serum osmolaity (8%) and serum sodium concentration (17%). While, it resulted in a significant decline in dry matter intake (50%), urine volume (74%) and fecal water excretion (60%) compared with their values in spring, but had no significant effect on the volume of drinking water. At the end of the 4-days deprivation period during spring, respiratory rate, dry matter intake and urine volume were reduced by 18, 77 and 91% relative to their average in control goats. The corresponding reduction in summer were 58, 100 and 100%. Serum osmolaity was risen by 15% in spring deprived goats and 29% in summer deprived goats. Rectal temperature rose by a mean value of $1.3^{\circ}C$ only in goats deprived of water in summer. Percent of moisture in the feces declined from 64 in control goats, to 24% in water deprived goats during spring season. The corresponding values in summer were 25 and 6%. These responses of Aardi goats deprived of water in summer indicate that they possess a water economy mechanism enable them to tolerate infrequent drinking in hot-arid environment.

Nutritive Value of Grasses in Semi-arid Rangelands of Ethiopia: Local Experience Based Herbage Preference Evaluation versus Laboratory Analysis

  • Keba, Habtamu T.;Madakadze, I.C.;Angassa, A.;Hassen, A.
    • Asian-Australasian Journal of Animal Sciences
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    • 제26권3호
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    • pp.366-377
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    • 2013
  • We examined the nutritive value of common grass species in the semi-arid rangelands of Borana in southern Ethiopia using local experience based herbage preference (LEBHP) perception and laboratory techniques. Local pastoralists in the study area were asked to identify common grass species and rank them according to the species' preferences and palatability to cattle. The pastoralists listed a total of 15 common grass species which were then sampled during the main rain and cold dry seasons and analyzed for crude protein (CP), Neutral Detergent Fiber (NDF), Acid Detergent Fiber (ADF) and ash content to verify pastoralists' claim regarding the quality of individual species. The relative feed value (RFV) and dry matter digestibility (DMD) were also calculated using NDF and ADF contents. Spearman's rank correlation was used to examine possible relationships between laboratory results and pastoralists' experience on grass quality. Cenchrus ciliaris, Chrysopogon aucheri, Digitaria milanjiana, Eragrostis papposa and Panicum maximum were the top five species based on LEBHP perception. There were indications of inconsistency in terms of LEBHP perception among the different pastoral communities. The chemical composition of all grass species showed significant (p<0.05) variation between sites, seasons and species. The results showed that the CP values for the Borana rangelands were in the range of 8.7% in the main rain season to 5.1% for the cold dry season. The fiber constituents were relatively low in the main rain season compared to the cold dry season. Overall, Digitaria milanjiana had the highest CP (16.5%) content, while the least was recorded with Heteropogon contortus (10.8) and Aristida adoensis (9.8%) during the main rain season. It seems that the spatial variability of landscapes within the wider geographical regions, soil properties and texture, and land-use patterns probably contributed to site differences in species quality. Generally, the RFV of individual grass species was significantly (p<0.05) varied between and within sites. The ranking of species by pastoralists according to their preferences by cattle was highly correlated with the chemical composition of laboratory results of individual grass species with 'r' values for CP (0.94), ash (0.95), NDF (-0.98), ADF (-0.93) and ADL (-0.93). We suggest the complimentary use of LEBHP and laboratory techniques in evaluating the nutritive quality of rangeland forage species for sustainable animal production.

ZnO-ZrO$_2$복합체의 전기적 성질과 일산화탄소 가스 감응특성 (The Electrical and CO Gas Sensing Characteristics of ZnO-ZrO$_2$Composite Ceramics)

  • 김태원;정승우;최우성
    • 한국전기전자재료학회:학술대회논문집
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    • 한국전기전자재료학회 1997년도 추계학술대회 논문집
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    • pp.436-439
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    • 1997
  • We investigated a electrical and CO gas sensing properties of pure ZnO and ZnO-ZrO$_2$ composite ceramics. We made 0∼20mo1% ZrO$_2$added ZnO composite ceramics and observed a microstructure of the broken side of the samples. The properties of the samples were studied with temperature, composition, arid a concentration of carbon monoxid. The measured 1000ppm CO sensitivities of pure ZnO were about 1∼1.42, and that of ZnO-ZrO$_2$were about 1∼10.6. In order words, the 1000ppm CO sensitivities of ZnO-ZrO$_2$composite ceramics were about 1∼2 times larger than that of pure ZnO with temperature. The measured 250ppm, 500ppm CO sensitivities of ZnO-ZrO$_2$composite ceramics were about ∼3.28. ∼5.04, respectively.

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