• Title/Summary/Keyword: 4-META

Search Result 1,415, Processing Time 0.024 seconds

The 2,3-Dihydroxybiphenyl 1,2-Dioxygenase Gene (phnQ) of Pseudomonas sp. DJ77: Nucleotide Sequence, Enzyme Assay, and Comparison with Isofunctional Dioxygenases

  • Kim, Seong-Jae;Shin, Hee-Jung;Park, Yong-Chjun;Kim, Young-Soo;Min, Kyung-Hee;Kim, Young-Chang
    • BMB Reports
    • /
    • v.32 no.4
    • /
    • pp.399-404
    • /
    • 1999
  • 2,3-Dihydroxybiphenyl 1,2-dioxygenase (2,3-DHBD), which catalyzes the ring meta-cleavage of 2,3-dihydroxybiphenyl, is encoded by the phnQ gene of biphenyl- and phenanthrene-degrading Pseudomonas sp. strain DJ77. We determined the nucleotide sequence of a DNA fragment of 1497 base pairs which included the phnQ gene. The fragment lncluded an open reading frame of 903 base pairs to accommodate the enzyme. The predicted amino acid sequence of the enzyme subunit consisted of 300 residues. In front of the gene, a sequence resembling an E. coli promoter was identified, which led to constitutive expression of the cloned gene in E. coli. The deduced amino acid sequence of the PhnQ enzyme exhibited 85.6% identity with that of the corresponding enzyme in Sphingomonas yanoikuyae Q1 (formerly S. paucimobilis Q1) and 22.1% identity with that of catechol 1,2,3-dioxygenase from the same DJ77 strain. PhnQ showed broader substrate preference than previously-cloned PhnE, catechol 2,3-dioxygenase. Ten amino acid residues, considered to be important for the role of extradiol dioxygenases, were conserved.

  • PDF

Administration of Lead Acetate on the Activity of Free Radical Meta-bolizing Enzyme and Ultrastructural Changes in Rat Kidney (흰쥐에 초산납투여가 신장조직중 Free Radical 대사효소 활성과 초미형태학적 변화에 미치는 영향)

  • 김승필;윤종국;박관규
    • Toxicological Research
    • /
    • v.11 no.1
    • /
    • pp.57-62
    • /
    • 1995
  • To investigate the ultrastructural changes of kidney and clarify to a cause of its changes in lead intoxicated rats, the 0.5% lead acetate administed orally to the rats and those were sacrifled at 2 day, 1, 2, 4, 6 and 8 week after the treatment of lead acetate. Each extirpated kidney was histopathologically examined under the electron microscopy and histochemical examination was also carried out. Concomitantly, the activity of free radical metabolizing enzyme was determined. The blood levels of lead concentration showed a gradual increase from the first group reaching the plateau at the one or two week group with the slightly decreasing value throughout the whole course of the experiment. And the urinary ALA concentration showed a gradual increase from the first group to the 8 week group. In the kidney tissue of rat sacrified at 6 week, the proximal tubular cells showed dilatation of endoplasmic reticulum, mitochondrial swelling, increased numbers of secondary lysosomes and myelin figure-like residual bodies on electron microscope and oxygen free radicals are identified by histochemistry on light microscope whereas there were no differences in the activity of catalase and glutathione peroxidase between the lead acetate treated group and control group. But the activity of xanthine oxidase was more increased in lead acetate treated rats than control group. Furthermore, the superoxide dismutase activity was significantly increased in the experimental group than the control group. In conclusion, it is assumed the kidney damage in lead intoxicated rat may be induced by free radicals.

  • PDF

A Fundamental Study on Development Framework of Integrated Database for Construction CALS (건설CALS 통합데이터베이스 구축을 위한 기초적 연구)

  • Kwon Sung-Hyun;Moon Sung-Woo;Lee Cheol-Kyu;Baik Jong-Keon;Kim Jae-Jun
    • Proceedings of the Korean Institute Of Construction Engineering and Management
    • /
    • autumn
    • /
    • pp.446-449
    • /
    • 2002
  • To establish integrated Database, this paper (1) grasped key success factors of integrated data environment, (2) selected linking information through investigating information-oriented projects and database necessary to perform construction project in public section, (3) divided selected information into project-based information and general information, and then (4) presented plan of sharing knowledge through using the linking method of knowledge database and meta-database.

  • PDF

A replication study of genome-wide CNV association for hepatic biomarkers identifies nine genes associated with liver function

  • Kim, Hyo-Young;Byun, Mi-Jeong;Kim, Hee-Bal
    • BMB Reports
    • /
    • v.44 no.9
    • /
    • pp.578-583
    • /
    • 2011
  • Aspartate aminotransferase (AST) and alanine aminotransferase (ALT) are biochemical markers used to test for liver diseases. Copy number variation (CNV) plays an important role in determining complex traits and is an emerging area in the study various diseases. We performed a genome-wide association study with liver function biomarkers AST and ALT in 407 unrelated Koreans. We assayed the genome-wide variations on an Affymetrix Genome-Wide 6.0 array, and CNVs were analyzed using HelixTree. Using single linear regression, 32 and 42 CNVs showed significance for AST and ALT, respectively (P value < 0.05). We compared CNV-based genes between the current study (KARE2; AST-140, ALT-172) and KARE1 (AST-1885, ALT-773) using NetBox. Results showed 9 genes (CIDEB, DFFA, PSMA3, PSMC5, PSMC6, PSMD12, PSMF1, SDC4, and SIAH1) were overlapped for AST, but no overlapped genes were found for ALT. Functional gene annotation analysis shown the proteasome pathway, Wnt signaling pathway, programmed cell death, and protein binding.

Developing A Medical Intelligence System in Medical Data Warehouse (의료 데이터 웨어하우스에서의 Medical Intelligence 시스템 개발)

  • Kim, Tae-Hun;Kim, Jong-Ho
    • IE interfaces
    • /
    • v.17 no.4
    • /
    • pp.426-439
    • /
    • 2004
  • This research discusses knowledge contents needed to build an OLAP system for medical sector, OLAP functionalities from past studies, and a medical intelligence system which is a kind of OLAP. The knowledge requirements which consist of nine contents and OLAP fundamental functionalities are applied to the system. Most past studies have focused on developing a medical data warehouse rather than OLAP. The medical intelligence system supplies health care providers (i.e., doctors, clinicians, researchers and nurses) and non-providers (i.e., managers and business analysts) with multidimensional OLAP functionalities. The system can be used to gain a deeper understanding of specific medical issues. In this research, we focus not on medical data warehouse, but on the technical challenges of designing and implementing an effective medical intelligence system for health care information. An architecture is applied to developing the medical intelligence system for a medical center in order to illustrate its practical usage. Six packages in the developed system are discussed in this research: Explorer, Analyzer, Reporter, Statistician, Visualizer, and Meta Administrator packages. Evaluation of the system and ongoing research directions conclude the research.

Toxic detection in mine water based on proteomic analysis of lysosomal enzymes in Saccharomyces cerevisiae

  • Nguyen, Ngoc-Tu;Kim, Yang-Hoon;Bang, Seung Hyuck;Hong, Ji Hye;Kwon, Soon Dong;Min, Jiho
    • Environmental Analysis Health and Toxicology
    • /
    • v.29
    • /
    • pp.19.1-19.10
    • /
    • 2014
  • Objectives Lysosome is the cell-organelle which is commonly used as biomonitoring tool in environmental pollution. In this study, the lysosomal proteomic of the yeast Saccharomyces cerevisiae was analyzed for utilization in the detection of toxic substances in mine water samples. Methods This work informs the expression of lysosomal proteomic in yeast in response with toxic chemicals, such as sodium meta-arsenite and tetracycline, for screening specific biomarkers. After that, a recombinant yeast contained this biomarker were constructed for toxic detection in pure toxic chemicals and mine water samples. Results Each chemical had an optimal dose at which the fluorescent protein intensity reached the peak. In the case of water samples, the yeast showed the response with sample 1, 3, 4, and 5; whereas there is no response with sample 2, 6, and 7. Conclusions The recombinant yeast showed a high ability of toxic detection in response with several chemicals such as heavy metals and pharmaceuticals. In the case of mine water samples, the response varied depending on the sample content.

A Tabu Search Algorithm for the Vehicle Routing Problem with Time Window and Dock Capacity Constraints (시간제약과 하역장 용량제약이 있는 차량경로문제에 대한 타부탐색 알고리즘)

  • Zang Heejeong;Lee Kyungsik;Choi Eunjeung;Park Sungsoo
    • Journal of the Korean Operations Research and Management Science Society
    • /
    • v.30 no.4
    • /
    • pp.45-60
    • /
    • 2005
  • We consider a vehicle routing problem with time window and dock capacity constraints (VRPTD). In most traditional models of vehicle routing problems with time window (VRPTW), each customer must be assigned to only one vehicle route. However demand of a customer may exceed the capacity of one vehicle, hence at least two vehicles may need to visit the customer We assume that each customer has Its own dock capacity. Hence, the customer can be served by only a limited number of vehicles simultaneously. Given a depot, customers, their demands, their time windows and dock capacities, VRPTD is to get a set of feasible routes which pass the depot and some customers such that all demands of each customer are satisfied Since VRPTD is NP-hard, a meta-heuristic algorithm is developed. The algorithm consists of two Procedures : the route construction procedure and the route scheduling procedure. We tested the algorithm on a number of instances and computational results are reported.

Thermal Transitions of the Drawn Film of a Nylon 6/Layered Silicate Nanocomposite

  • Park Soo-Young;Cho Yang-Hwan
    • Macromolecular Research
    • /
    • v.13 no.2
    • /
    • pp.156-161
    • /
    • 2005
  • The thermal transitions of a nylon 6/layered silicate nanocomposite were studied by differential scanning calorimetry and in-situ synchrotron X-ray diffraction. The drawn film of the nylon 6/layered silicate nanocomposite typically showed three endotherms in the DSC thermogram; a very broad endotherm at $\sim120^{\circ}C(T_{1})$, a double-melting endotherm at $\sim215^{\circ}C(T_{2})$, and a high temperature endotherm at $\sim240^{\circ}C(T_{3})$. The drawn film of the nylon 6/ layered silicate nanocomposite was comprised of a mixture of the $\alpha and \gamma$ forms, with $the \alpha form$ being generated by drawing the pressed film having $the \gamma form$. The melting and crystallization of the crystals were observed at the above thermal transitions during the heating experiment performed at the Pohang X-ray synchrotron radiation source (4C2). The newly generated form was meta-stable and melted $at {\sim}T_{1}$. The double-melting $at {\sim}T_{2}$ was due to the exothermic crystallization of $the \alpha form$ during the main endothermic melting of $the \gamma form$. $The \alpha form$ crystallized $at {\sim}T_{2}$ and melted $at {\sim}T_{3}$.

A study on the microstructure change during the welding of a cast iron with a Fe-Mn-Al steel powder (주철과 Fe-Mn-Al강 이종금속 용접부의 조직변화에 관한 연구)

  • 김경중;서정현
    • Journal of Welding and Joining
    • /
    • v.8 no.4
    • /
    • pp.35-45
    • /
    • 1990
  • Casting are widely used nodays as complicated and diversified forming materials due to its superior castability. However the welding of cast iron has not been accompaniced satisfactory resulting in an microstructure change happened in the heat affected zone (HAZ), especially the graphite are formed and shaped consecutively in the area and it has great impact on the crack occuring and growth together with martensite forming in this area. It case of gray cast iron welding, it is required for pre-heat treatment or specific welding consumables to restrain forming the martensite in the HAZ. In this study, by applying the plasma surface overlaid welding. Fe-Mn-Al steel powder has been used for improvement of anti-crackability in the HAZ and much attention has been paid to establish the overlaid welding method for gray cast iron so that optimum welding conditions may prevent the cracking. With our experiments, we have found that to prevent defects which may occur in the HAZ, the overlaid welding technique for gray cast iron has been developed.

  • PDF

Analysis of Research Related to the Neonatal Pain Relief Intervention in Korea (신생아 통증완화 중재 관련 국내 연구분석)

  • Oh, Jin-A;Noh, In-Suk
    • Korean Parent-Child Health Journal
    • /
    • v.12 no.2
    • /
    • pp.160-176
    • /
    • 2009
  • Purpose: The purpose of this study was to identify patterns and trends of studies, analyze the research, and improve direction of nursing research related to the neonatal pain relief intervention in Korea. Method: The studies were selected from dissertation, nursing journals and others in Korea. Result: Until 1995, there were no studies related to the neonatal pain relief intervention. The most studies have been increased rapidly after 2005. Pure of true experimental design of research design was used 5, Quasi experimental design was 7, preexperimental design was 7. Participants were preterm baby was 8, full-term baby was 9, and preterm and full-term baby was 2. Utilization of instruments as follows: NIPS, PIPP, ABSS, NFCS, pulse oximeter, EKG monitoring, and stethoscope. Contents of the research studies were classified 4 different types, such as studies of about the effect of auditory stimulation, taste stimulation, tactile stimulation, and topical anesthetic cream. The results of 25 studies were effective for the neonatal pain relief, but the results of 5 studies weren't. Conclusion: In the future studies need to develop the various instrument which is assessment of neonatal pain. It is important to the integrated by meta analysis. Additionally, we should develop protocol nursing intervention for the effective pain release.

  • PDF