• Title/Summary/Keyword: 3D volume reconstruction

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Biomedical Applications of Stereoscopy for Three-Dimensional Surface Reconstruction in Scanning Electron Microscopes

  • Kim, Ki Woo
    • Applied Microscopy
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    • v.46 no.2
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    • pp.71-75
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    • 2016
  • The scanning electron microscope (SEM) offers two-dimensional (2D) micrographs of three-dimensional (3D) objects due to its inherent operating mechanisms. To overcome this limitation, other devices have been used for quantitative morphological analysis. Many efforts have been made on the applications of software-based approaches to 3D reconstruction and measurements by SEM. Based on the acquisition of two stereo images, a multi-view technique consists of two parts: (i) geometric calibration and (ii) image matching. Quantitative morphological parameters such as height and depth could be nondestructively measured by SEM combined with special software programs. It is also possible to obtain conventional surface parameters such as roughness and volume of biomedical specimens through 3D SEM surface reconstruction. There is growing evidence that conventional 2D SEM without special electron detectors can be transformed to 3D SEM for quantitative measurements in biomedical research.

A Study on Stereo Visualization of the X-ray Scanned Image Based on Volume Reconstruction (볼륨기반 X-선 스캔영상의 3차원 형상화 연구)

  • Lee, Nam-Ho;Park, Soon-Yong;Hwang, Young-Gwan;Park, Jong-Won;Lim, Yong-Gon
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.15 no.7
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    • pp.1583-1590
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    • 2011
  • As the existing radiation scanning systems use 2-dimensional radiation scanned images, the low accuracy has been pointed out as a problem of it. This research analyzes the applicability of the stereo image processing technique to X-ray scanned images. Two 2-dimensional radiation images which have different disparity values are acquired from a newly designed stereo image acquisition system which has one additional line sensor to the conventional system. Using a matching algorithm the 3D reconstruction process which find the correspondence between the images is progressed. As the radiation image is just a density information of the scanned object, the direct application of the general stereo image processing techniques to it is inefficient. To overcome this limitation of a stereo image processing in radiation area, we reconstruct 3-D shapes of the edges of the objects. Also, we proposed a new volume based 3D reconstruction algorithm. Experimental results show the proposed new volume based reconstruction technique can provide more efficient visualization for cargo inspection. The proposed technique can be used for such objects which CT or MRI cannot inspect due to restricted scan environment.

3D Reconstruction of Internal Zonation in Zircon (저어콘의 내부 누대구조의 3차원적 복원기법)

  • Kim, Sook Ju;Yi, Keewook
    • The Journal of the Petrological Society of Korea
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    • v.23 no.2
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    • pp.139-144
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    • 2014
  • A series of the planar cathodoluminescence (CL) and backscattered-electron (BSE) images of magmatic zircon from the Paleozoic Yeongdeok pluton in the southeastern Korean Peninsula were taken using a scanning electron microscope for a 3D reconstruction of internal zonation of zircon. Seven zircon crystals mounted in epoxy were serially polished with average $3{\mu}m$ thickness to their disappearance. Their 3D reconstruction of zonation was performed using the Volume Viewer function in the ImageJ software. The 3D oscillatory zoning pattern of zircon was apparently shown in all the analyzed crystals. This method can further be applied to zircon crystals of multiple growth histories as well as other geological materials.

Compression of time-varying volume data using Daubechies D4 filter (Daubechies D4 필터를 사용한 시간가변(time-varying) 볼륨 데이터의 압축)

  • Hur, Young-Ju;Lee, Joong-Youn;Koo, Gee-Bum
    • 한국HCI학회:학술대회논문집
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    • 2007.02a
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    • pp.982-987
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    • 2007
  • The necessity of data compression scheme for volume data has been increased because of the increase of data capacity and the amount of network uses. Now we have various kinds of compression schemes, and we can choose one of them depending on the data types, application fields, the preferences, etc. However, the capacity of data which is produced by application scientists has been excessively increased, and the format of most scientific data is 3D volume. For 2D image or 3D moving pictures, many kinds of standards are established and widely used, but for 3D volume data, specially time-varying volume data, it is very difficult to find any applicable compression schemes. In this paper, we present a compression scheme for encoding time-varying volume data. This scheme is aimed to encoding time-varying volume data for visualization. This scheme uses MPEG's I- and P-frame concept for raising compression ratio. Also, it transforms volume data using Daubechies D4 filter before encoding, so that the image quality is better than other wavelet-based compression schemes. This encoding scheme encodes time-varying volume data composed of single precision floating-point data. In addition, this scheme provides the random reconstruction accessibility for an unit, and can be used for compressing large time-varying volume data using correlation between frames while preserving image qualities.

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Measurement of 3D Flow inside Micro-tube Using Digital Holographic PTV Technique (디지털 Holographic PTV기법을 이용한 미세튜브 내부 3차원 유동장 측정)

  • Kim, Seok;Kim, Ju-Hee;Lee, Sang-Joon
    • 유체기계공업학회:학술대회논문집
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    • 2006.08a
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    • pp.177-178
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    • 2006
  • Digital holographic particle tracking velocimetry (HPTV) is developed by single high-speed camera and single continuous laser with long coherent length. This system can directly capture 4000 hologram fringe images for 1 second through a camera computer memory. The 3D particle location is made of the reconstruction by using a computer hologram algorithm. This system can successfully be applied to instantaneous 3D velocity measurement in the water flow inside a micro-tube. The average of 100 instantaneous velocity vectors is obtained by reconstruction and tracking with the time of evolution of recorded fringes images. In the near future, we will apply this technique to measure 3D flow information inside various micro structures.

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Enhancing Focus Measurements in Shape From Focus Through 3D Weighted Least Square (3차원 가중최소제곱을 이용한 SFF에서의 초점 측도 개선)

  • Mahmood, Muhammad Tariq;Ali, Usman;Choi, Young Kyu
    • Journal of the Semiconductor & Display Technology
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    • v.18 no.3
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    • pp.66-71
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    • 2019
  • In shape from focus (SFF) methods, the quality of image focus volume plays a vital role in the quality of 3D shape reconstruction. Traditionally, a linear 2D filter is applied to each slice of the image focus volume to rectify the noisy focus measurements. However, this approach is problematic because it also modifies the accurate focus measurements that should ideally remain intact. Therefore, in this paper, we propose to enhance the focus volume adaptively by applying 3-dimensional weighted least squares (3D-WLS) based regularization. We estimate regularization weights from the guidance volume extracted from the image sequences. To solve 3D-WLS optimization problem efficiently, we apply a technique to solve a series of 1D linear sub-problems. Experiments conducted on synthetic and real image sequences demonstrate that the proposed method effectively enhances the image focus volume, ultimately improving the quality of reconstructed shape.

Positron Emission Computed Tomographs and Image Reconstruction Methods (PET 장치와 화상 재구성법)

  • Lee, Man-Koo
    • Journal of radiological science and technology
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    • v.22 no.1
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    • pp.5-11
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    • 1999
  • This paper reviews recent major activities on instrumentation and methodology of PET. The performance of the PET instrumentation can be expressed by four physical characteristics, 1) spatial resolution, 2) coincidence resolving time, 3) energy resolution, and 4) detection efficiency. The physical and technical aspects of PET systems are briefly discussed along with these characteristics. Toward high resolution PET the recent trend has been to design multiple rings of densely packed detector arrays with scintillators. In order to satisfy the sampling requirement in reconstruction, continuous detector units has been developed. Iterative image reconstruction algorithms have received considerable attention for improvement of both the sampling requirement and image quality toward the stationary PET. Better resolving time improves the maximum true coincidence rate, which is also increased with more detectors placed in coincidence with each other. It suggests that volume PET is promising for enhancement of detection efficiency. The scattered coincidence event rate may be reduced by using detectors with better energy resolution. The use of interplane septa, however, takes over improvement of energy resolution in 2D PET. Energy resolution becomes an important factor for image quality under the condition of septa removal such as volume PET. Toward full utilization of emitting photons, 3D reconstruction incorporating oblique rays has been studied, and volume reconstruction algorithms have been developed. Practical volume PET systems impose heavy burden not only to detector sets and coincidence circuits, but also to computers in the memory requirements and the data processing. In conclusion, there have been many ingenious methods in development of PET instrumentation, which are based on unique capability of PET. They will be expected to overcome technical limitations, and to approach the fundamental limits.

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Volume measurement of limb edema using three dimensional registration method of depth images based on plane detection (깊이 영상의 평면 검출 기반 3차원 정합 기법을 이용한 상지 부종의 부피 측정 기술)

  • Lee, Wonhee;Kim, Kwang Gi;Chung, Seung Hyun
    • Journal of Korea Multimedia Society
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    • v.17 no.7
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    • pp.818-828
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    • 2014
  • After emerging of Microsoft Kinect, the interest in three-dimensional (3D) depth image was significantly increased. Depth image data of an object can be converted to 3D coordinates by simple arithmetic calculation and then can be reconstructed as a 3D model on computer. However, because the surface coordinates can be acquired only from the front area facing Kinect, total solid which has a closed surface cannot be reconstructed. In this paper, 3D registration method for multiple Kinects was suggested, in which surface information from each Kinect was simultaneously collected and registered in real time to build 3D total solid. To unify relative coordinate system used by each Kinect, 3D perspective transform was adopted. Also, to detect control points which are necessary to generate transformation matrix, 3D randomized Hough transform was used. Once transform matrices were generated, real time 3D reconstruction of various objects was possible. To verify the usefulness of suggested method, human arms were 3D reconstructed and the volumes of them were measured by using four Kinects. This volume measuring system was developed to monitor the level of lymphedema of patients after cancer treatment and the measurement difference with medical CT was lower than 5%, expected CT reconstruction error.

Statistical Analysis of 3D Volume of Red Blood Cells with Different Shapes via Digital Holographic Microscopy

  • Yi, Faliu;Lee, Chung-Ghiu;Moon, In-Kyu
    • Journal of the Optical Society of Korea
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    • v.16 no.2
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    • pp.115-120
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    • 2012
  • In this paper, we present a method to automatically quantify the three-dimensional (3D) volume of red blood cells (RBCs) using off-axis digital holographic microscopy. The RBCs digital holograms are recorded via a CCD camera using an off-axis interferometry setup. The RBCs' phase image is reconstructed from the recorded off-axis digital hologram by a computational reconstruction algorithm. The watershed segmentation algorithm is applied to the reconstructed phase image to remove background parts and obtain clear targets in the phase image with many single RBCs. After segmenting the reconstructed RBCs' phase image, all single RBCs are extracted, and the 3D volume of each single RBC is then measured with the surface area and the phase values of the corresponding RBC. In order to demonstrate the feasibility of the proposed method to automatically calculate the 3D volume of RBC, two typical shapes of RBCs, i.e., stomatocyte/discocyte, are tested via experiments. Statistical distributions of 3D volume for each class of RBC are generated by using our algorithm. Statistical hypothesis testing is conducted to investigate the difference between the statistical distributions for the two typical shapes of RBCs. Our experimental results illustrate that our study opens the possibility of automated quantitative analysis of 3D volume in various types of RBCs.

Speed Optimization Design of 3D Medical Image Reconstruction System Based on PC (PC 기반의 3차원 의료영상 재구성 시스템의 고속화 설계)

  • Bae, Su-Hyeon;Kim, Seon-Ho;Yu, Seon-Guk
    • Journal of Biomedical Engineering Research
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    • v.19 no.2
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    • pp.189-198
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    • 1998
  • 3D medical image reconstruction techniques are useful to figure out complex 3D structures from the set of 2D sections. In the paper, 3D medical image reconstruction system is constructed under PC environment and programmed based on modular programming by using Visual C++ 4.2. The whole procedures are composed of data preparation, gradient estimation, classification, shading, transformation and ray-casting & compositing. Three speed optimization techniques are used for accelerating 3D medical image reconstruction technique. One is to reduce the rays when cast rays to reconstruct 3D medical image, another is to reduce the voxels to be calculated and the other is to apply early ray termination. To implement 3D medical image reconstruction system based on PC, speed optimization techniques are experimented and applied.

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