• 제목/요약/키워드: 12S rDNA

검색결과 398건 처리시간 0.021초

Isolation, Screening and Identification of Swine Gut Microbiota with Ochratoxin A Biodegradation Ability

  • Upadhaya, Santi Devi;Song, Jae-Yong;Park, Min-Ah;Seo, Ja-Kyeom;Yang, Liu;Lee, Chan-Ho;Cho, Kyung-J.;Ha, Jong-K.
    • Asian-Australasian Journal of Animal Sciences
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    • 제25권1호
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    • pp.114-121
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    • 2012
  • The potential for ochratoxin A (OTA) degradation by swine intestinal microbiota was assessed in the current study. Intestinal content that was collected aseptically from swine was spiked with 100 ppb OTA and incubated for 6 and 12 h at $39^{\circ}C$. An OTA assay was conducted using the incubated samples, and it was found that 20% of the OTA toxin was detoxified, indicating the presence of microbes capable of OTA degradation. Twenty-eight bacterial species were isolated anaerobically in M 98-5 media and 45 bacterial species were isolated using nutrient broth aerobically. Screening results showed that one anaerobic bacterial isolate, named MM11, detoxified more than 75% of OTA in liquid media. Furthermore, 1.0 ppm OTA was degraded completely after 24 h incubation on a solid 'corn' substrate. The bacterium was identified by 16S rDNA sequencing as having 97% sequence similarity with Eubacterium biforme. The isolation of an OTA-degrading bacterium from the swine natural flora is of great importance for OTA biodegradation and may be a valuable potential source for OTA-degradation enzymes in industrial applications.

제주도 남동부해역에서 채집된 은붕장어, Gnathophis nystromi (뱀장어목: 붕장어과) 엽상자어의 분포특성 및 형태발달 (Distribution and morphological development of a Gnathophis nystromi (Congridae: Anguilliformes) leptocephalus collected from southeastern waters of Jeju Island)

  • 지환성;최정화;윤상철;주형운
    • 수산해양기술연구
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    • 제51권4호
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    • pp.527-534
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    • 2015
  • The twenty six specimens of leptocephali (15.8-32.6 mm TL) of the family Congridae, collected from southeastern waters offshore of Jeju Island during August 2014, and were identified by means of morphology and genetics. Those specimens were identified as belonging to the family Congridae based on various combinations of morphological characters. An analysis of the partial 12S rRNA sequences (886 base pairs) of mitochondrial DNA showed that our specimens must be Gnathophis nystromi, because their sequences were concordant with those of G. nystromi adult (genetic distance= 0.001), furthermore their total myomeres being consistent with those of G. nystromi adult. Catch rates of G. nystromi leptocephali were higher in the offshore regions than coastal regions of Jeju Island. The smallest leptocephali (< 20 mm TL) were collected offshore from Jeju Island. We hypothesize that one of the spawning grounds of G. nystromi is located offshore in the Jeju Island. In conclusion, the hatched preleptocephali of G. nystromi might have been transported from offshore near Jeju Island to the Korea Strait by the Kuroshio Current and Tsushima Warm Current.

In vitro Evaluation of Different Feeds for Their Potential to Generate Methane and Change Methanogen Diversity

  • Kim, Seon-Ho;Mamuad, Lovelia L.;Jeong, Chang-Dae;Choi, Yeon-Jae;Lee, Sung Sill;Ko, Jong-Youl;Lee, Sang-Suk
    • Asian-Australasian Journal of Animal Sciences
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    • 제26권12호
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    • pp.1698-1707
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    • 2013
  • Optimization of the dietary formulation is the most effective way to reduce methane. Nineteen feed ingredients (brans, vegetable proteins, and grains) were evaluated for their potential to generate methane and change methanogen diversity using an in vitro ruminal fermentation technique. Feed formulations categorized into high, medium and low production based on methane production of each ingredient were then subjected to in vitro fermentation to determine the real methane production and their effects on digestibility. Methanogen diversity among low, medium and high-methane producing groups was analyzed by PCR-DGGE. The highest methane production was observed in Korean wheat bran, soybean and perilla meals, and wheat and maize of brans, vegetable protein and cereal groups, respectively. On the other hand, corn bran, cotton seed meal and barley led to the lowest production in the same groups. Nine bacteria and 18 methanogen 16s rDNA PCR-DGGE dominant bands were identified with 83% to 99% and 92% to 100% similarity, respectively. Overall, the results of this study showed that methane emissions from ruminants can be mitigated through proper selection of feed ingredients to be used in the formulation of diets.

Laboratory and Field Evaluations of Entomopathogenic Lecanicillium attenuatum CNU-23 for Control of Green Peach Aphid (Myzus persicae)

  • Kim, Hyang-Yeon;Lee, Hyang-Burm;Kim, Young-Cheol;Kim, In-Seon
    • Journal of Microbiology and Biotechnology
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    • 제18권12호
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    • pp.1915-1918
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    • 2008
  • An entomopathogenic fungus was isolated from an infected aphid. The isolate conformed most closely to Lecanicillium attenuatum CBS 402.78 (AJ292434) based on the internal transcribed spacer (ITS) region of its 18S rDNA, and thus was designated L. attenuatum CNU-23. Laboratory and field evaluations of CNU-23 blastospores were carried out for the control of green peach aphids. The laboratory evaluations of CNU-23 revealed an aphid mortality of about 80% with an estimated $LT_{50}$ of 3.72 days after the application of CNU-23 at $1{\times}10^6$ blastospores/ml. Meanwhile, the field evaluations of CNU-23 performed on greenhouse pepper plants during the rainy season showed an aphid mortality ranging from 72% to 97%. Significant sporulation was observed in the aphids treated with CNU-23. Therefore, the results suggest that L. attenuatum CNU-23 can be used as a biocontrol agent for green peach aphids on greenhouse pepper plants.

하절기 급사 돼지의 Clostridium novyi 진단 및 분리 (Diagnosis on sudden death cases during summer season and isolation of Clostridium novyi)

  • 정창기;서병주;김원일
    • 한국동물위생학회지
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    • 제39권2호
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    • pp.131-136
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    • 2016
  • Clostridium novyi (C. novyi) is a gram positive, non-capsulated, motile, obligatory anaerobe that produces endospores. Both C. novyi type A and B produce a bacteriophage encoded lethal alpha toxin which belongs to a family of large clostridial cytotoxins. These large clostridial cytotoxins of C. novyi bind to the uncharacterized receptors on host vascular endothelial cells, which leads to the loss of integrity of the vascular endothelium with subsequent edema, refractory hypotension, organ failure, and sudden death. A total of 13 sudden death cases were submitted to Chonbuk National University-Veterinary Diagnostic Center between June and October, 2015. The samples, mainly liver, were collected in sterile vials after necropsy and processed within 12~24 hours for diagnosis, isolation and identification of C. novyi. All of the 4 gram positive samples showed amplification by PCR. Out of 4 positive samples, 3 were detected to be C. novyi type B and 1 was detected as C. novyi type A. Based on the 16S rDNA sequence analysis, 1 case (150564) showed 99% similarity with C. novyi type A while other 3 cases (150388, 150557 and 150775) presented 99% similarity with C. novyi type B. Based on the results, C. novyi was found to be prevalent in Korean pig farms and causes sudden death to finishing pigs or sows during summer season. Thus, C. novyi should be considered for differential diagnosis on sudden death cases during the summer season.

제주도 남동부해역에서 채집된 바다뱀(Ophisurus macrorhynchos) (뱀장어목: 바다뱀과) 엽상자어의 첫 형태기재 및 분포특성 (First Morphological Description and the Distribution of Ophisurus macrorhynchos (Anguilliformes: Ophichthidae) Leptocephalus Collected from Southeastern Waters of Jeju Island)

  • 지환성;최정화;최광호;윤상철;이동우;김진구
    • 한국수산과학회지
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    • 제47권6호
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    • pp.888-894
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    • 2014
  • Seventeen specimens of leptocephali [9.8-44.5 mm total length (TL)], of the family Ophichthidae, were collected from southeastern waters off Jeju Island and the Korea-Japan intermediate zone, and identified by means of morphology and genetics. These specimens were identified as belonging to the subfamily Ophichthinae based on various combinations of morphological characters: 211-215 total myomeres; 7 gut swellings; 2 liver lobes connected with the gall bladder on the second lobe; 6-7 postanal pigments present from anus to caudal margin. An analysis of the partial 12S rRNA sequences (849 base pairs) of mitochondrial DNA showed that our specimens must be Ophisurus macrorhynchos because their sequences were concordant with those of the adult O. macrorhynchos (genetic distance = 0.000). Furthermore, their total myomeres were consistent with those of the O. macrorhynchos adult. This is the first time that the morphological characteristics of O. macrorhynchos leptocephali have been described for Korean waters, and we suggest diagnostic characteristics for the genus Ophisurus leptocephali. We hypothesize that one of the spawning grounds of O. macrorhynchos is located in the southeastern part of Jeju Island.

Isolation and Characterization of Comprehensive Polychlorinated Biphenyl-Degrading Bacterium, Enterobacter sp. LY402

  • Jia, Ling-Yun;Zheng, Ai-Ping;Xu, Li;Huang, Xiao-Dong;Zhang, Qing;Yang, Feng-Lin
    • Journal of Microbiology and Biotechnology
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    • 제18권5호
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    • pp.952-957
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    • 2008
  • A Gram-negative bacterium, named LY402, was isolated from contaminated soil. 16S rDNA sequencing and measurement of the physiological and biochemical characteristics identified it as belonging to the genus Enterohacter. Degradation experiments showed that LY402 had the ability to aerobically transform 79 of the 91 major congeners of Aroclor 1242, 1254, and 1260. However, more interestingly, the strain readily degraded certain highly chlorinated and recalcitrant polychlorinated biphenyls (PCBs). Almost all the tri- and tetra-chlorobiphenyls (CBs), except for 3,4,3',4'-CB, were degraded in 3 days, whereas 73% of 3,4,3',4'-, 92% of the penta-, 76% of the hexa-, and 37% of the hepta-CBs were transformed after 6 days. In addition, among 12 octa-CBs, 2,2',3,3',5,5',6,6-CB was obviously degraded, and 2,2',3,3',4,5,6,6'- and 2,2',3,3',4,5,5',6'-CB were slightly transformed. In a metabolite analysis, mono- and dichlorobenzoic acids (CBAs) were identified, and parts of them were also transformed by strain LY402. Analysis of PCB degradation indicated that strain LY402 could effectively degrade PCB congeners with chlorine substitutions in both ortho- and para-positions. Consequently, this is the first report of an Enterobacteria that can efficiently degrade both low and highly chlorinated PCBs under aerobic conditions.

제주 감귤식초 발효균주 선발 (Sensory Characteristics of Citrus Vinegar fermented by Gluconacetobacter hansenii CV1)

  • 김미림;최경호
    • 한국식품조리과학회지
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    • 제21권2호
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    • pp.243-249
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    • 2005
  • 제주산 감귤과즙을 이용하여 감귤식초를 제조할 목적으로 식초산 발효균 CV1과 CV2를 분리하고 식초산 생성능력을 산업적으로 이용되고 있는 균주와 비교 검정하고 165 rDNA 염기서열을 분석하고 동정하였다. 분리균은 8일간의 발효에 의하여 산도 $5.5\%$ 이상의 식초산을 생성하였으며, 감귤식초 발효에는 사과식초나 감식초 발효에 이용되고 있는 균주 보다 더욱 적합한 것으로 판정되었다. 분리한 균주는 Gluconacetobacter hanenii(CV2) 및 G. hanenii의 변이주(CV1)로 동정되었다.

고도에 따른 한라산 구상나무와 주목의 외생균근균 다양성 비교 (Ectomycorrhizal Fungal Diversity on Abies korea and Taxus cuspidata at Two Altitudes in Mt. Halla)

  • 이지은;엄안흠
    • 한국균학회지
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    • 제47권3호
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    • pp.199-208
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    • 2019
  • 한라산 상부와 하부에 서식하는 구상나무와 주목의 뿌리에서 각각 외생균근균의 군집 구조를 분석하였다. 형태적 특징과 분자적 분석을 통해 구상나무에서는 하부에서 6속 8종, 상부에서 7속 10종의 외생균근균을 확인하였다. 주목에서는 하부에서 4속 8종, 상부에서 6속 10종의 외생균근균을 확인하였다. 외생균근균의 종 다양성 지수, 종 균등도, 종 수는 숙주식물과 관계없이 상부에서 높게 나타난 반면, 균투 수는 하부에서 높게 나타났다. 하부와 상부에서 구상나무와 주목 뿌리의 외생균근균 군집 간의 유사도를 분석한 결과, 고도에 관계없이 구상나무의 뿌리에서 발견된 외생균근균 군집 간의 유사도가 주목 뿌리의 외생균근균 군집 간 유사도나 구상나무 뿌리의 외생균근균 군집과 주목의 뿌리 외생균근균 군집 간의 유사도에 비해 더 높게 나타났다. 이는 구상나무가 주목과는 다른 특이한 외생균근균 군집 구조를 이루고 있으며, 기온 상승으로 멸종 위기에 처한 구상나무의 보전과 자생지 관리에 도움을 줄 수 있을 것으로 판단된다.

장마철 표고(Lentinula edodes) 재배사내 발생 유해 진균류의 동정 (Identification of fungal species in oak mushroom cultivation houses during the rainy season)

  • 정상욱;장은경;최선규;이원호;반승언
    • 한국버섯학회지
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    • 제19권1호
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    • pp.66-70
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    • 2021
  • 표고 재배사내 진균류의 발생특성을 분석하기 위해 골목에서 발생한 진균류를 분리·동정하고 재배사내 온·습도 환경을 분석하였다. 표고골목에서 발생한 진균을 분석한 결과 Cladosporium sp., C. cladosporioides, C. anthropophilum, Pleosporales sp., Trichoderma harzianum, Acremonium sp. 6종으로 확인되었다. 재배사내 환경을 조사한 결과는 5월 1일부터 10월 12일 사이에 재배사내 최고·저 온도가 14.0~30.1℃, 평균습도는 82.8%으로 나타났다. 이러한 결과는 표고 재배과정 중 진균류의 발생이 활발한 초여름부터 가을철 사이에 철저한 재배관리가 중요하며, 한번 발병한 진균류는 연중 재배사내 생존이 가능하기 때문에 주기적으로 모니터링하여 사전에 유해 진균류 발생에 유리한 생육환경을 예방해야 한다.