• Journal of the Korean Society for Library and Information Science
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• v.51 no.4
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• pp.227-248
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• 2017

This paper introduces an integrated model for systematically constructing a linguistic resource database that can be used by machine learning-based biomedical information extraction systems. The proposed method suggests an orderly process of collecting and constructing dictionaries and training sets for both named-entity recognition and relation extraction. Multiple heterogeneous structures for the resources which are collected from diverse sources are analyzed to derive essential items and fields for constructing the integrated database. All the collected resources are converted and refined to build an integrated linguistic resource storage. In this paper, we constructed entity dictionaries of gene, protein, disease and drug, which are considered core linguistic elements or core named entities in the biomedical domains and conducted verification tests to measure their acceptability.

• Journal of Digital Contents Society
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• v.17 no.6
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• pp.509-521
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• 2016

A novel Samples Balanced Genetic Algorithm combined with Extreme Learning Machine (SBGA-ELM) for Parkinson's Disease diagnosis and detecting bio-markers is presented in this paper. Proposed approach uses genes' expression data of 22,283 genes from open source ParkDB data base for accurate PD diagnosis and detecting bio-markers. Proposed SBGA-ELM includes two major steps: feature (genes) selection and classification. Feature selection procedure is based on proposed Samples Balanced Genetic Algorithm designed specifically for genes expression data from ParkDB. Proposed SBGA searches a robust subset of genes among 22,283 genes available in ParkDB for further analysis. In the "classification" step chosen set of genes is used to train an Extreme Learning Machine (ELM) classifier for an accurate PD diagnosis. Discovered robust subset of genes creates ELM classifier with stable generalization performance for PD diagnosis. In this research the robust subset of genes is also used to discover 24 bio-markers probably responsible for Parkinson's Disease. Discovered robust subset of genes was verified by using existing PD diagnosis approaches such as SVM and PBL-McRBFN. Both tested methods caused maximum generalization performance.

• Journal of the Korean Institute of Intelligent Systems
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• v.12 no.4
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• pp.289-293
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• 2002

Learning Classifier System (LCS) finds a new rule set using genetic algorithm (GA). In this paper, The Zeroth Level Classifier System (ZCS) is applied to evolving the strategy of a robot soccer simulation game (SimuroSot), which is a state varying dynamical system changed over time, as GBML (Genetic Based Machine Learning) and we show the effectiveness of the proposed scheme through the simulation of robot soccer.

• Convergence Security Journal
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• v.6 no.3
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• pp.87-95
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• 2006

An intrusion can be defined as any set of actors that attempt to compromise the integrity, confidentiality and availability of computer resource and destroy the security policy of computer system. The Intrusion Detection System that detects the intrusion consists of data collection, data reduction, analysis and detection, and report and response. It is important for feature selection to detect the intrusion efficiently after collecting the large set of data of Intrusion Detection System. In this paper, the feature selection method using Genetic Algorithm and Decision Tree is proposed. Also the method is verified by the simulation with KDD data.

• KOGO NEWS
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• v.6 no.1
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• pp.29-33
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• 2006

Gene set analysis is a new concept and method. to analyze and interpret microarray gene expression data and tries to extract biological meaning from gene expression data at gene set level rather than at gene level. Compared with methods which select a few tens or hundreds of genes before gene ontology and pathway analysis, gene set analysis identifies important gene ontology terms and pathways more consistently and performs well even in gene expression data sets with minimal or moderate gene expression changes. Moreover, gene set analysis is useful for comparing multiple gene expression data sets dealing with similar biological questions. This review briefly summarizes the rationale behind the gene set analysis and introduces several algorithms and tools now available for gene set analysis.

• Journal of Korean Association for Spatial Structures
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• v.10 no.4
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• pp.93-102
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• 2010

In this study, a smart sky-bridge composed of MR damper and FPS has been proposed and vibration control performance of a smart sky-bridge for the connected buildings was investigated. To this end, 10-story and 20-story building structures connected by a smart sky-bridge were selected as example structures and El Centro and Kobe earthquakes, which have near and far fault ground motion characteristics respectively, were used for time history analyses. In order to effectively control the smart sky-bridge, fuzzy logic controller was developed and multi-objective genetic algorithm was used to optimize fuzzy logic controllers. Based on optimization results, it has been seen that there is a trade-off between seismic responses of 10-story and 20-story buildings and a suite of Pareto optimal solutions of fuzzy logic controllers for seismic response control can be obtained by multi-objective genetic algorithm. It is shown from numerical study that seismic responses of adjacent buildings can be efficiently controlled by using a smart sky-bridge.

• Clinical and Experimental Pediatrics
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• v.48 no.6
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• pp.669-674
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• 2005

Nephrogenic diabetes insipidus (NDI) is a disorder in which the secretion of antidiuretic hormone is normal, but the response of the renal collecting tubules to vasopressin is impaired. Compared with acquired NDI (a-NDI), which is secondary to chronic bilateral incomplete urinary tract obstruction with hydronephrosis, congenital NDI (c-NDI) is a very rare heritable disorder that usually follows the X- linked recessive pattern. Clinical symptoms of c-NDI can be non specific, and often the disease ultimately results in failure to thrive, or mental retardation. Recently, the diagnosis can be confirmed by direct sequencing analysis of the peripheral blood specimens. The long-term results of treatment for c-NDI are not satisfactory. Reports on the follow up of c-NDI cases are rare and there is no report on the cases treated with combinations of three drugs. We report herein a case of severe c-NDI in an 8 year-old-boy with a severely dysconfigurated urinary tract system. The patient and his mother showed a frameshift mutation on the AVPR2 gene on chromosome Xq28:.847_851delTGCTG (p.C283fsX90). The patient showed normal growth and development by treatment with combinations of hydrochlorothiazide ($65mg/m^2$), amiloride (0.3 mg/kg/d) and indomethacin ($100mg/m^2$), yet after five years he needed adjuvant cystostomy to relieve him from the residual symptoms of urgency with polyuria.

• Journal of Life Science
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• v.29 no.1
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• pp.105-111
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• 2019

In recent years, progress has been made in the search for the development of new anti-cancer agents by employing specific inhibitors of histone deacetylase (HDAC)-6 to block signal transduction pathways in cancer cells. This study examined the effects of tubastatin A (TubA), an HDAC-6 inhibitor, on the growth and development of immature oocytes in murine ovaries using RNA sequencing analysis. The results from a gene set enrichment analysis (GSEA) indicated that the expression of most of the gene sets involved in the cell cycle and control and progression of meiosis decreased in the TubA-treated group as compared with that in germinal vesicle (GV) stage oocytes. In addition, an ingenuity pathway analysis (IPA) suggested that TubA not only caused increased expression of p53 and pRB and decreased expression of CDK4/6 and cyclin D but also caused elevated expression of genes involved in the control of the DNA check point in G2/M stage oocytes. These results suggest that TubA may induce cell cycle arrest and apoptosis through the induction of changes in the expression of genes involved in signal transduction pathways associated with DNA damage and the cell cycle of immature oocytes in the ovary.

• The KIPS Transactions:PartB
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• v.9B no.3
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• pp.277-286
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• 2002

Genetic programming (GP) has been combined with quantum mechanical perturbation theory to make a new algorithm to construct mathematical models and perform predictions for chaotic time series from real world. Procedural similarities between time series modeling and perturbation theory to solve quantum mechanical wave equations are discussed, and the exemplary GP approach for implementing them is proposed. The approach is based on multiple populations and uses orthogonal functions for GP function set. GP is applied to original time series to get the first mathematical model. Numerical values of the model are subtracted from the original time series data to form a residual time series which is again subject to GP modeling procedure. The process is repeated until predetermined terminating conditions are met. The algorithm has been successfully applied to construct highly effective mathematical models for many real world chaotic time series. Comparisons with other methodologies and topics for further study are also introduced.

• Proceedings of the Korea Society of Poultry Science Conference
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• 2005.11a
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• pp.53-59
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• 2005

Sequences of candidate chicken testis-specific genes were analyzed in order to develop a resource for functional genomic studies of the testis and male germ cells. Tentative consensus sequences (TCs) containing ESTs expressed in testis libraries only were selected from the TIGR Gallus gallus Gene Index, resulting in a total of 292 TCs. The transcriptional expression of these genes were evaluated in a variety of chicken tissues, including testis and ovary, Of the panel of 292 TCs, 110 were expressed in a testis-specific manner. The correlation between the number of ESTs assembled into each TC and the number of testis-specific TCs was not significant. Annotation of the TCs using the Gene Ontology database terms showed that the proportion of testis-specific TCs that were classified as having catalytic activity (within the Molecular Function branch) was larger than the proportion of total chicken TCs classified in the same way. Our results might facilitate the investigation of testis-specific genes and their functional analysis in the chicken as well as in other avian species.