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http://dx.doi.org/10.9728/dcs.2016.17.6.509

Bio-marker Detector and Parkinson's disease diagnosis Approach based on Samples Balanced Genetic Algorithm and Extreme Learning Machine  

Sachnev, Vasily (School of Information, Communication and Electronics Engineering, Catholic University)
Suresh, Sundaram (School of Computer Science and Engineering, Nanyang Technological University)
Choi, YongSoo (Division of Liberal Arts & Teaching, Sungkyul University)
Publication Information
Journal of Digital Contents Society / v.17, no.6, 2016 , pp. 509-521 More about this Journal
Abstract
A novel Samples Balanced Genetic Algorithm combined with Extreme Learning Machine (SBGA-ELM) for Parkinson's Disease diagnosis and detecting bio-markers is presented in this paper. Proposed approach uses genes' expression data of 22,283 genes from open source ParkDB data base for accurate PD diagnosis and detecting bio-markers. Proposed SBGA-ELM includes two major steps: feature (genes) selection and classification. Feature selection procedure is based on proposed Samples Balanced Genetic Algorithm designed specifically for genes expression data from ParkDB. Proposed SBGA searches a robust subset of genes among 22,283 genes available in ParkDB for further analysis. In the "classification" step chosen set of genes is used to train an Extreme Learning Machine (ELM) classifier for an accurate PD diagnosis. Discovered robust subset of genes creates ELM classifier with stable generalization performance for PD diagnosis. In this research the robust subset of genes is also used to discover 24 bio-markers probably responsible for Parkinson's Disease. Discovered robust subset of genes was verified by using existing PD diagnosis approaches such as SVM and PBL-McRBFN. Both tested methods caused maximum generalization performance.
Keywords
Bio-marker; Parkingson Disease; Genetic Algorithm; Machine Learning;
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