• Title/Summary/Keyword: 유전모수

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Calibration of cultivar parameters for cv. Shindongjin for a rice growth model using the observation data in a low quality (저품질 관측자료를 사용한 벼 생육 모델의 신동진 품종모수 추정)

  • Hyun, Shinwoo;Kim, Kwang Soo
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.21 no.1
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    • pp.42-54
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    • 2019
  • Crop models depend on a large number of input parameters including the cultivar parameters that represent the genetic characteristics of a given cultivar. The cultivar parameters have been estimated using high quality data for crop growth, which require considerable costs and efforts. The objective of this study was to examine the feasibility of using low quality data for the parameter estimation. In the present study, the cultivar parameters for cv. Shindongjin were estimated using the data obtained from the report of new cultivars development and research from 2005 to 2016. The root mean square errors (RMSE) of the heading dates were less than 3 days when the parameters associated with phenology were estimated. In contrast, the coefficient of determination for yield tended to be less than 0.1. The large errors incurred by the fact that no growth data collected over a season was used for parameter estimation. This suggests that detailed observation data needs to be prepared for parameter calibration, which would be aided by remote sensing approaches. The occurrence of natural disasters during a growing season has to be considered because crop models cannot take into account the effects of those events. Still, our results provide a reasonable range for the parameters, which could be used to set the boundary of a given parameter for cultivars similar to cv. Shindongjin in further studies.

Estimation of Genetic Parameters for Economic Traits and Profit by Milk Production of Holstein Dairy Cattle in Korea (국내 Holstein종 젖소의 경제형질과 착유량에 따른 소득의 유전모수 추정)

  • Noh, Jae-Kwang;Choi, Yun-Ho;Cho, Kwang-Hyun;Choi, Tae-Jeong;Na, Seung-Hwan;Cho, Ju-Hyun;Kim, Jin-Hyung;Shin, Ji-Sub;Do, Chang-Hee
    • Journal of Animal Science and Technology
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    • v.54 no.4
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    • pp.275-282
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    • 2012
  • The data including milk yields, fat and protein percent for 628,395 heads collected by National Agricultural Cooperative Federation, 15 type traits and final score for 62,262 heads collected by Korea Animal Improvement Association, which were born in 1998 to 2004, and net profits calculated from milk price and raising expenses of individuals were used to estimate genetic parameters. The highest positive genetic correlation, 0.81, was shown between body depth (BD) and loin strength (SR). Genetic correlations between body depth (BD) and udder depth (UD), front teat placement (TP) and front teat length (TL) were -0.23, which were lowest among the linear type traits. Furthermore, medium level of negative genetic correlations were shown the milk yield with milk contents rate traits. Mostly low level of positive genetic correlations were shown between the milk traits and linear score traits except milk yield and stature. Most of the genetic correlations of between the linear score traits and net profit were low level of positive or negative genetic correlations. Among the genetic correlations, body depth (BD), angularity (DF) and rear attachment width (UW), and final score (FS) with net profit were high as 0.17, 0.17, 0.18 and 0.18, respectively. Finally all of the genetic correlations between net profit and milk traits were positive and higher than the linear traits with positive genetic correlations. The results of this study suggest that net profit has been related with the linear traits, such as body depth (BD), angularity (DF) and rear attachment width (UW) traits, and furthermore, milk traits including yield and contents rates influence positively and greatly on net profit.

Estimation of Genetic Parameter for Carcass Traits According to MTDFREML and Gibbs Sampling in Hanwoo(Korean Cattle) (MTDFREML 방법과 Gibbs Sampling 방법에 의한 한우의 육질형질 유전모수 추정)

  • 김내수;이중재;주종철
    • Journal of Animal Science and Technology
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    • v.48 no.3
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    • pp.337-344
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    • 2006
  • The objective of this study was to compare of genetic parameter estimates on carcass traits of Hanwoo(Korean Cattle) according to modeling with Gibbs sampler and MTDFREML. The data set consisted of 1,941 cattle records with 23,058 animals in pedigree files at Hanwoo Improvement Center. The variance and covariance among carcass traits were estimated via Gibbs sampler and MTDFREML algorithms. The carcass traits considered in this study were longissimus dorsi area, backfat thickness, and marbling score. Genetic parameter estimates using Gibbs sampler and MTDFREML from single-trait analysis were similar with those from multiple-trait analysis. The estimated heritabilities using Gibbs sampler were .52~.54, .54 ~.59, and .42~.44 for carcass traits. The estimated heritabilities using MTDFREML were .41, .52~.53, and .31~.32 for carcass traits. The estimated genetic correlation using Gibbs sampler and MTDFREML of LDA between BF and MS were negatively correlated as .34~.36, .23~.37. Otherwise, genetic correlation between BF and MS was positive genetic correlation as .36~.44. The correlations of breeding value for marbling score between via MTDFREML and via Gibbs sampler were 0.989, 0.996 and 0.985 for LDA, BF and MS respectively.

Estimation of Genetic Parameters for Economic Traits in Swine (종돈의 경제 형질의 유전모수 추정에 관한 연구)

  • Choi, C.S.;Lee, I.J.;Cho, K.H.;Seo, K.S.;Lee, J.G.
    • Journal of Animal Science and Technology
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    • v.46 no.2
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    • pp.145-154
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    • 2004
  • This study was conducted to estimate genetic parameter of Duroc, Landrace and Yorkshire breeds based on the on-farm performance tested records of 57,316 pigs under the supervision of Korean Animal Improvement Association from 1992 to 1999. Genetic parameters were estimated with a multiple trait animal model by using DF - REML. The result obtained in this study was summarized as follow ; The estimated heritabilities of Duroc, Landrace and Yorkshire were 0.46${\sim}$0.65 for the average backfat thickness, 0.28${\sim}$0.31 for loin depth, 0.50~0.60 for percent lean, 0.45${\sim}$0.55 for the average daily gain, 0.38${\sim}$0.50 for age at 90kg, respectively. Phenotypic correlation of average backfat thickness with loin depth, percent lean, average daily gain and age at 90㎏ for the three breeds were -0.12${\sim}$-0.01, -0.81${\sim}$-0.76, 0.34${\sim}$0.46, and -0.41${\sim}$-0.33, respectively. Phenotypic correlation of loin depth with percent lean, average daily gain and age at 90kg were 0.12${\sim}$0.23, 0.03${\sim}$0.21, and -0.17${\sim}$-0.03, respectively. Phenotypic correlation of percent lean with average daily gain and age at 90kg were -0.37${\sim}$-0.26 and 0.26~0.35, respectively. Phenotypic correlation of average daily gain with age at 90kg was -0.97${\sim}$-0.95. The estimated genetic correlation coefficients of average backfat thickness with loin depth, percent lean, average daily gain and age at 90kg estimated for the three breeds were -0.17${\sim}$0.03, -0.79${\sim}$-0.69, 0.24${\sim}$0.45 and -0.41${\sim}$-0.19, respectively. The estimated genetic correlation coefficients of loin depth with percent lean, average daily gain and age at 90kg were 0.11~0.19, 0.23 and -0.30~-0.20, respectively. The estimated correlation coefficients of percent lean with average daily gain and age at 90kg were -0.36${\sim}$-0.13 and 0.10~0.34, respectively. The estimated genetic correlation coefficients of average daily gain with age at 90㎏ was -0.96${\sim}$-0.95.

Estimation of genetic parameters for milk flow traits in Holstein dairy cattle (홀스타인 젖소의 비유속도형질에 대한 유전모수 추정)

  • Cho, Kwang-Hyun;Lee, Hak-Kyo;Lee, Joon-Ho;Park, Kyung-Do
    • Journal of the Korean Data and Information Science Society
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    • v.24 no.3
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    • pp.487-493
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    • 2013
  • This experiment was conducted to investigate the possibility that milking speed traits can be improved by estimating their genetic parameters and to provide basic information when the goals for dairy cattle improvement are established. The amount of milk within the first three minutes (3MG) was 8.97 Kg and 57% of total milk was produced within 3 minutes, but it was lower than that of the recommended level (70%). The highest milk flow (HMF) and average milk flow (DMHG) in the main milking phase were 3.66kg/min and 2.43kg/min, respectively, which were lower than those of the recommended levels (4.0 5.0kg/min and 3.0 4.0kg/min), suggesting slower milking speed of domestic dairy cattle compared to that of foreign dairy cattle. The heritability estimates on the highest milk flow (HMF), maximum milk flow (HMG) in one minute and average milk flow (DMHG) in the main milking phase were 0.35, 0.31 and 0.29, respectively, which are suitable for the improvement of traits with medium heritability. The genetic correlation between total milk yields (MGG) and average milk flow (DMHG) in the main milking phase was 0.591, while the genetic correlations among milking speed traits including the highest milk flow (HMF), maximum milk flow (HMG) in one minute and average milk flow (DMHG) in the main milking phase were in the range of 0.889 0.997.

Genetic parameters of milk β-hydroxybutyrate acid, milk acetone, milk yield, and energy-corrected milk for Holstein dairy cattle in Korea (국내 Holstein종에서 milk β-hydroxybutyrate acid, milk acetone, 에너지 보정유량 및 산유량의 유전모수 추정)

  • Lee, SeokHyun;Choi, Sungwoon;Dang, Chang-Gwon;Mahboob, Alarn;Do, ChangHee
    • Journal of the Korean Data and Information Science Society
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    • v.28 no.6
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    • pp.1349-1360
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    • 2017
  • This study was conducted to estimate the genetic parameters for common ketosis indicators (${\beta}$-hydroxybutyrate acid, BHBA; milk acetone), feed intake efficiency indicator (energy-corrected milk, ECM), and milk yield (MY) in Korean Holstein. A total of 75,072 monthly test-day records from 14,397 first parity cows were collected, between 2012 and 2016, from Korea animal improvement association enrolled farms. Variance components were estimated using a multiple trait random regression model. The heritability of BHBA and acetone levels ranged from 0.06 to 0.15 at different DIMs. The phenotypic and genetic correlations between BHBA and acetone were between 0.73 and 0.90, and between 0.93 and 0.98, respectively. The phenotypic correlation between BHBA and MY, between acetone and MY, between BHBA and ECM, and between acetone and ECM ranged from -0.18 to -0.05, -0.23 to -0.05, 0 to 0.10, and -0.09 to 0.01, respectively. Genetic correlation estimates between BHBA and MY, between acetone and MY, between BHBA and ECM, and between acetone and ECM also ranged from -0.55 to 0.05, -0.62 to -0.04, -0.10 to 0.11, and -0.20 to 0.00, respectively. We hope that these results would greatly assist in the improvement of ketosis disease in the local Holsteins.

Estimation of Genetic Parameter and Growth Traits by Sex of Pacific Abalone, Haliotis discus hannai (북방전복 (Haliotis discus hannai) 의 성별에 따른 성장형질 및 유전모수 추정)

  • Park, Choul-Ji;Park, Jong-Won;Kim, Bo-Ra;Jeong, Kyu Hyeon;Kim, Young Jin;Son, Yoon Suk;Kim, Kyung Kil
    • The Korean Journal of Malacology
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    • v.32 no.4
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    • pp.249-254
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    • 2016
  • The purpose of this study is to estimate genetic parameter and growth traits by sex of Pacific abalone, Haliotis discus hannai. The abalone 10 family produced using 1:1 mating system of male and female for analyses of sex ratio and growth traits (shell length, shell width, and total weight) by sex. Overall mean in phenotypic traits at 30-month-old showed 85.01 mm of shell length, 57.49 mm of shell width and 73.34 g of total weight respectively. The sex ratio (female : male) was 1:0.93 (n = 191:177). The values of growth traits by sex showed significant difference (P < 0.05). The each value of female growth traits were shown to be higher than the values of male growth traits. The heritability of growth traits by sex were estimated that the heritability of female growth traits are higher than male that. The results suggest a possibility of improving the growth of cultured abalone using selection breeding by sex.

Estimation of Genetic Parameters for Linear Type and Conformation Traits in Hanwoo Cows (한우 암소의 선형 및 외모심사형질에 대한 유전모수 추정)

  • Lee, Ki-Hwan;Koo, Yang-Mo;Kim, Jung-Il;Song, Chi-Eun;Jeoung, Yeoung-Ho;Noh, Jae-Kwang;Ha, Yu-Na;Cha, Dae-Hyeop;Son, Ji-Hyun;Park, Byong-Ho;Lee, Jae-Gu;Lee, Jung-Gyu;Lee, Ji-Hong;Do, Chang-Hee;Choi, Tae-Jeong
    • Journal of agriculture & life science
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    • v.51 no.6
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    • pp.89-105
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    • 2017
  • This study utilized 32,312 records of 17 linear type and 10 conformation traits(including final scores) of Hanwoo cows in the KAIA(Korea Animal Improvement Association) ('09~'10), with 60,556 animals in the pedigree file. Traits included stature, body length, strength, body depth, angularity, shank thickness, rump angle, rump length, pin bone width, thigh thickness, udder volume, teat length, teat placement, foot angle, hock angle, rear leg back view, body balance, breed characteristic, head development, forequarter quality, back line, rump, thigh development, udder development, leg line, and final score. Genetic and residual(co) variances were estimated using bi-trait pairwise analyses with EM-REML algorithm. Herd-year-classifier, year at classification, and calving stage were considered as fixed effects with classification months as a covariate. The heritability estimates ranged from 0.03(teat placement) to 0.42(body length). Rump length had the highest positive genetic correlation with pin bone width(0.96). Moreover, stature, body length, strength, and body depth had the highest positive genetic correlations with rump length, pin bone width, and thigh thickness(0.81-0.94). Stature, body length, strength, body depth, rump length, pin bone width, and thigh thickness traits also had high positive genetic correlations.

Estimation of Growth Curve Parameters for Body Weight and Measurements in Castrated Hanwoo (Bostaurus Coreanae) (한우 거세우의 체중 및 체형에 대한 성장곡선 모수 추정)

  • Choi, Te-Jeong;Seo, Kang-Seok;Kim, Si-Dong;Cho, Kwang-Hyun;Choi, Jae-Gwan;Hwang, In-Ho;Choi, Ho-Sung;Park, Chul-Jin
    • Journal of Animal Science and Technology
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    • v.50 no.5
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    • pp.601-612
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    • 2008
  • This study was conducted to figure out how the shape of Hanwoo changes over time, examine the rank correlations between the carcass traits which are the selection traits and parameters of growth curve, and determine the correlation between body shape and carcass. Body weight, body measurements and carcass traits were measured from 161 castrated Hanwoo, and 12 growth traits and 5 carcass traits were investigated in total. The logistic model(Nelder, 1961) used for the estimation of growth curve parameters and growth characteristics at inflection point were calculated by these growth curve parameters. The value of this parameter was greatest for pinbone width, which suggests that it is an early ripening trait, while it was lowest for chest girth, suggesting it to be a late ripening trait. The rank correlations of chest depth, chest width, and hip width with backfat thickness steadily increased from 6 to 24 months, while the rank correlations of other traits decreased after 18 months until 24 months of age. Only phenotypic records were analyzed in this study, but for examine the genetic changes over growth phase in Hanwoo, if another additional genetic analysis like as estimation of genetic parameters should achieve, body measurements may be useful traits in proven bull selection.

Parameter Estimates for Genetic Effects on Growth Traits of Korean Native Goats (한국재래산양의 발육형질에 대한 유전능력 평가)

  • Kim, Y.K.;Lee, J.W.;Choi, S.H.;Son, S.G.;Na, G.J.;Moon, S.J.;Kim, J.H.
    • Journal of Animal Science and Technology
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    • v.44 no.2
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    • pp.171-180
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    • 2002
  • Data were collected from 1996 through 2000 on Korean Native Goats by the National Livestock Research Institute of Korea were used to estimate genetic parameters for birth, 3 month, and 6 month body weights. Estimates were obtained with MTDFREML. Model included animal and maternal genetic and residual effects. The model included sex, birth year-season, and feeding type as fixed factors. Average body weights and standard deviation were 1.78${\pm}$0.32 at birth of age, 7.99${\pm}$2.66 at 3 month of age, and 12.08${\pm}$3.20 kg at 6 month of age, respectively. Average body measurements were 36.46cm for withers height, 38.06cm for body length, and 45.56cm for heart girth at 3 month of age, and were 40.27cm for withers height, 42.01cm for body length, and 51.07cm for heart girth at 6 month of age, respectively. Estimates of heritability were 0.66 for birth weight, 0.34 for 3 month body weight, and 0.27 for 6 month body weight, respectively. Maternal effects would be important for birth and 3 month body weights and may not be needed in a model for 6 month body weight.