• Title/Summary/Keyword: 유전모수

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Comparison of Genetic Variation between Pre-practice Mature Trees and Post-practice One-year Old Seedlings in Pinus densiflora Natural Regeneration Stands (소나무 천연갱신림내 성목과 치수의 유전변이 비교)

  • Ahn, Ji Young;Lee, Jei Wan;Lee, Seok Woo;Baek, Seung Hoon;Lim, Hyo In;Kim, Hyun Seop
    • Journal of Korean Society of Forest Science
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    • v.104 no.4
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    • pp.543-548
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    • 2015
  • We studied the genetic impact of natural regeneration practices, such as Single seed tree, Group seed tree, Patch clear cutting and Alternate strip clear cutting systems, by comparing the nuclear microsatellite(nSSR) variation of post-practice natural regeneration one-year old seedlings of Pinus densiflora to that of pre-practice mature trees. The levels of genetic diversity of seedlings (A=13.6, $A_e$=4.3, $H_o$=0.571, $H_e$=0.597) were similar to those of mature trees (A=13.4, $A_e$=4.3, $H_o$=0.596, $H_e$=0.598) and the differences in the level of genetic diversity between seedlings and mature trees for each of the practices were not statistically significant. The degree of genetic differentiation between seedlings and mature trees was very low ($F_{ST}$=0.002) and the pairwise $F_{ST}$ values between seedlings and mature trees for all practices were less than 0.01. Overall, the natural regeneration practices appeared to have only minor impacts on the genetic diversity and the genetic composition in the studied P. densiflora stands. For a better understanding of the genetic effects of natural regeneration practices, subsequent studies such as temporal genetic variation of seedlings formed by crossing among post-practice mature trees should be considered.

Estimation of Genetic Parameters via Gibbs Sampler using Animal Model for Economic Traits in Pigs (Gibbs Sampler를 이용한 돼지 주요 경제형질의 유전모수 추정)

  • Cho, K.H.;Kim, M.J.;Kim, I.C.;Jeon, G.J.
    • Journal of Animal Science and Technology
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    • v.50 no.1
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    • pp.19-26
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    • 2008
  • Heritability and genetic correlation for growth traits in Duroc pig breed were estimated using Bayesian method via Gibbs sampling. The data set consisted of 3,526 performance records at National Institute of Animal Science. For estimating those parameters using Gibbs sampling, 5,000 cycles of ‘burn-in’ period were discarded among a total of 55,000 samples. Out of the remaining 50,000 samples, 5,000 estimates by each parameter were retained and used for analyses to avoid any correlation among adjacent samples. The growth traits considered in this study were average daily gain at 30kg(ADG1), average daily gain at 90kg(ADG2), backfat thickness(BF), days to 90kg(D90) and feed conversion ratio(FC). The estimated heritabilities and their standard deviation using Gibbs sampler were 0.43±0.04, 0.49±0.038, 0.31±0.040, 0.48±0.039 and 0.62±0.086, respectively. Genetic correlations were -0.02, -0.13, -0.55 and -0.15 between ADG1 with ADG2, BF, D90 and FC, respectively, 0.16, -0.73, -0.32 between ADG2 with BF, D90 and FC respectively, 0.01, -0.08 between BF with D90, FC, respectively, and 0.23 between D90 with FC.

Study on Estimation of Genetic Parameters for the Meat Production Traits and the Standard Growth Curve in the Inbred Line of Korean Native Pig (한국 재래 돼지 근교 계통 돈의 산육 형질에 대한 유전모수 및 표준 성장 곡선 추정에 관한 연구)

  • Kim, M.J.;Cho, K.H.;Jeon, G.J.;Kim, Y.H.;Park, J.C.;Jung, H.J.;Kim, I.C.;Kwon, O.S.;Jin, H.J.;Kim, J.H.;Lee, H.K.
    • Journal of Embryo Transfer
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    • v.22 no.3
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    • pp.143-147
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    • 2007
  • Records on 546 Korea native pigs for average daily gain (ADG), age at 70 kg (D70 kg) and backfat thickness (BF) made between 2001 and 2006 in herds on National Institutes of Animal Science in Korea were used to estimate genetic parameters. The data was analyzed by the DF-REML (Derivative-Free Restricted Maximum Likelihood) program of Boldman using a single-trait animal model. Heritabilities were 0.26, 0.09, and 0.29 for ADG, D70 kg and BF, respectively. The phenotypic correlations of ADG with D70 kg and BF were -0.71 and 0.30. The phenotypic correlation of D70 kg with BF was -0.15. The genetic correlations of ADG with D70 kg and BF were -0.11, 0.41, respectively. The genetic correlation of D70 kg with BF was -0.16. The data of weights and measurements on body length, body height and chest width after age at 11 months (days to 330) were shown scarcely less differences compare to data of age at 11 months.

Effects of inbreeding depression on litter size of Korean native pig (국내 품종 재래돼지 산자수에 대한 근친퇴화 효과)

  • Kim, Young-Sin;Cho, Kyu-Ho;Lee, Mi-Jin;Kim, Jeong-A;Cho, Eun-Seok;Hong, Joon-Ki
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.20 no.6
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    • pp.514-520
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    • 2019
  • The reduction in performance due to inbreeding (i.e. inbreeding depression) has long been documented in plant and animal populations. The population of Korean native pigs are small and this breed is valuable in Korea.. This study was aimed to investigate effects of inbreeding depression on total number of piglets born (TNB) and number of piglets born alive (NBA) in Korean native pigs. We used 2,806 pedigree and 303 sows's data with 483 phenotypic records. After estimating genetic parameters for each traits, inbreeding depression was estimated using a mixed model in which the inbreeding coefficient was included as a covariate. Korean native pigs had high heritability for each traits. Inbreeding coefficient constantly increased from 1998 to 2017~2018 but there is no reduction for each traits in 2017~2018 in compared with those in 1998. Significant inbreeding depression was detected for TNB (p=0.03) but not for NBA (p=0.41). In addition there are significantly positive interactions between inbreeding coefficient and breeding value for both traits (p<0.05). These results suggest that Korean native pigs are still having genetic variation for TNB and NBA, which could overcome reproductive risks from inbreeding coefficient increase.

Estimation of Genetic Parameters for Reproductive Traits in Yorkshire (요크셔종의 번식형질에 대한 유전모수 추정)

  • Song, Kwang-Lim;Kim, Byeong-Woo;Roh, Seung-Hee;Sun, Du-Won;Kim, Hyo-Sun;Lee, Deuk-Hwan;Jeon, Jin-Tae;Lee, Jung-Gyu
    • Journal of agriculture & life science
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    • v.44 no.5
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    • pp.55-64
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    • 2010
  • This study was conducted to estimate genetic parameters for reproductive traits using multivariate animal models in Yorkshire breed. For the study, 4,989 records for litter traits collected between the year 2001 and 2005 from Yorkshire pigs in K GGP were used. The effects of environmental factors such as farrowing year, parity, weaning to estrus interval (WEI), and suckling period were statistically significant (p<0.05), but farrowing season was not significant, for reproductive traits. The estimates genetic correlations and phenotypic correlations in total number of born and number of suckling, was shown to highly correlated. The genetic correlations were higher than phenotypic correlation. The estimates of heritabilities for reproductive traits, considering permanent environment effects (PE) were much lower than those obtained when permanent environment effects were not considered (NPE) in the model. The estimates of heritabilities were 0.240 and 0.076 for total number of born and 0.187 and 0.096 for number of suckling in NPE, and PE, respectively. These results itivcate that PE should be considered in the statistical mode to estimate more acco ate breeding values.

Estimation of Genetic Parameters for Residual feed intake in Duroc pigs (두록 품종에서 잔류사료섭취량의 유전모수 추정)

  • Song, Na-Rae;Kim, Yong-Min;Kim, Doo-Wan;Sa, Soo-Jin;Kim, Ki-Hyun;Kim, Young-Hwa;Cho, Kyu-Ho;Do, Chang-hee;Hong, Joon-Ki
    • Journal of agriculture & life science
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    • v.50 no.1
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    • pp.147-153
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    • 2016
  • Residual feed intake(RFI), a linear index, is a trait derived from the difference between actual feed intake and that predicted on the basis of the requirements for maintenance of body weight and production. This study was conducted to estimate RFI genetic parameters of swine in Korea, and used 8,696 of productions data of Duroc swine species which were born from 2001 to 2014. Correlation between average daily gain and RFI breeding value has been investigated by negative correlation of -0.2(P>0.01). Estimates of heritability for RFI1(residual feed intake calculated from model average dily gain) and RFI2(residual feed intake calculated from model average dily gain and backfat) were 0.37 and 0.45. From the genetic parameter estimates found in this study, selection for low RFI in Duroc pigs has the potential to improve feed conversion ratio and reduce feed intake.

Estimation of Genetic Parameters for Body Weights and Body Measurements of Korean Cattle (한우의 체중과 체척치에 대한 유전모수의 추정)

  • Han, K.J.
    • Journal of Animal Science and Technology
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    • v.44 no.2
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    • pp.201-206
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    • 2002
  • This study was conducted to estimate heritabilities and genetic and phenotypic correlations among body weight and 10 different body measurements on the basis of the data from Korean cows at Korean Cattle Improvement Areas from 1979 to 1995. Results obtained are as follows. 1. Heritabilities of body weights at birth, weaning, 12 months and 27 months of age estimated were 0.208${\pm}$0.038, 0.457${\pm}$0.073, 0.476${\pm}$0.082 and 0.227${\pm}$0.040, respectively. Heritabilities of body measurements at 12 and 27 months of age estimated were 0.326 and 0.242 for withers height, 0.486 and 0.110 for body length and 0.462 and 0.170 for chest girth2. Genetic and phenotypic correlations among body weight and ten body measurements at 12 months of age were positive ranging from 0.223 to 0.999. Genetic and phenotypic correlations among body weight and ten body measurements at 27 months of age were positive ranging from 0.290 to 0.883.

유전 알고리즘을 이용한 비례적 수명 감소 모형을 갖는 시스템의 고장 강도와 보수 효과 추정

  • 윤원영;정일한;신주환
    • Proceedings of the Korean Reliability Society Conference
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    • 2000.11a
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    • pp.315-320
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    • 2000
  • 본 연구에서는 수리 가능한 시스템에서 고장 강도와 수리 효과에 대한 모수 추정 문제를 다룬다. 시스템이 노후화로 인한 고장이 발생할 경우 최소수리가 행해지고 계획된 예방정비에서는 비례적 수명 감소가 이루어지는 수명 데이터에 대해서 고장 강도 함수의 모수와 정비의 수리효과를 추정하기 위해서 최대 우도 함수 방법을 이용한다. 또한 유전자 알고리즘을 이용해서 우도 함수를 최대화시키는 절차를 개발하고 수치 예제를 나타낸다.

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Maximum Likelihood Estimator of the Segregation Parameter under Multiple Ascertainment$(0 with Known$\pi$ (Multiple Ascertainment $\pi$가 존재할 때 분리확률모수 $\theta$치의 우도추정치로서 통계모형의 구성과 유전병에 감염된 출생아의 예측)

  • Shin, Han Poong
    • Journal of the Korean Statistical Society
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    • v.6 no.2
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    • pp.167-177
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    • 1977
  • 유전적 질환이 있는 가계에서 출생하는 자녀중에서 유전적인 질환을 보유할 수 있는 확률을 예측하는 방법의 하나로서 우도추정치(likelihood estimator)를 사용하는 것은 분리분석(segregation analysis)에서 중요한 역할을 하고 있다. Elston과 Stewart(1971)는 이러한 분석방법의 일반적인 통계모형을 정립하였으며 필자(1974)와 Morton 등 (1974)은 complex segregation이 될 때에 분석되는 4가지의 통계모형을 주장하였다. 본 연구의 목적은 multiple ascertainment $\pi$가 존재하는 경우 분리확률모수(segregation parameter) $\theta$의 우도추정치를 구하고 둘째로 oligogenic case에 대한 이론적인 배경을 구명하고자 한다.

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Estimation of Genetic Parameters for Growth-related Traits of Two Korean Abalone Subspecies, Haliotis discus hannai and H. discus discus, by using Multiple Traits of Animal Model in Early Growth Period (다형질 Animal Model에 의한 한국산 전복 2 아종의 초기 치패의 성장관련 형질에 대한 유전모수 추정)

  • Choe, Mi-Kyung;Han, Seock-Jung;Yang, Sang-Geun;Won, Seung-Hwan;Park, Choul-Ji;Yeo, In-Kyu
    • The Korean Journal of Malacology
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    • v.23 no.2
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    • pp.217-225
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    • 2007
  • This study was conducted to estimate the general genetic parameters, heritabilities, and genetic and phenotypic correlations on growth-related traits by studying multiple trait animal model in two Korean abalone species, Haliotis discus hannai and H. discus discus. The data was collected from the records of 3,795 individuals produced from 54 sires and 74 dams in Haliotis discus hannai and 399 individuals produced from 7 sires and 7 dams in Haliotis discus discus. The data was evaluated by the Genetics and Breeding Research Center, National Fisheries Research & Development Institute (NFRDI). Genetic parameters were estimated for two abalone species raised in Bukjeju branch, NFRDI, from May 20 to November 1, 2004. The heritability estimates for growth traits of shell length, shell width and body weight obtained from restricted maximum likelihood (REML) were ranging from 0.73 to 0.78 in Haliotis discus hannai, and from 0.87 to 0.89 in H. discus discus. The heritabilities for shell shape and condition factor were ranging from 0.17 to 0.20 in Haliotis discus hannai, and from 0.01 to 0.45 in H. discus discus. Genetic and phenotypic correlations were over than 0.96 between shell parameters and weight in both of abalone subspecies, indicating that breeding for weight gains could successfully be achieved by selecting for shell length.

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