• Title/Summary/Keyword: 변이 추정

Search Result 1,220, Processing Time 0.029 seconds

Variation of nuclear ribosomal ITS sequences of Polygonum section Persicaria (Polygonaceae) in Korea (한국산 여뀌속 Persicaria절(마디풀과)의 핵 리보오솜 ITS 염기서열 변이)

  • Kwak, Myounghai;Kim, Min-Ha;Won, Hyosig;Park, Chong-Wook
    • Korean Journal of Plant Taxonomy
    • /
    • v.36 no.1
    • /
    • pp.21-40
    • /
    • 2006
  • We examined nrDNA ITS sequences from 16 taxa of Polygonum sect. Persicaria(Polygonaceae) in Korea to infer relationships among the taxa within the section. A neighbor-joining tree obtained from the analysis of the ITS sequences suggest that the ITS region was useful inferring the phylogenetic relationships among the taxa. The neighbor-joining tree indicates that P.amphibium is clearly separated from the other Korean taxa. The tree also reveals the presence of five major groups in the Korean taxa of the section; 1) P. lapathifolium var. lapathifolium, 2) P. persicaria and P. viscoferum, 3) P. orientale and P. viscosum, 4) P. japonicum and 5) a group including the remaining taxa. these relationships depicted on the ITS tree are largely congruent with those inferred from morphological and anatomical characters.

Thickness Estimation of Transition Layer using Deep Learning (심층학습을 이용한 전이대 두께 예측)

  • Seonghyung Jang;Donghoon Lee;Byoungyeop Kim
    • Geophysics and Geophysical Exploration
    • /
    • v.26 no.4
    • /
    • pp.199-210
    • /
    • 2023
  • The physical properties of rocks in reservoirs change after CO2 injection, we modeled a reservoir with a transition zone within which the physical properties change linearly. The function of the Wolf reflection coefficient consists of the velocity ratio of the upper and lower layers, the frequency, and the thickness of the transition zone. This function can be used to estimate the thickness of a reservoir or seafloor transition zone. In this study, we propose a method for predicting the thickness of the transition zone using deep learning. To apply deep learning, we modeled the thickness-dependent Wolf reflection coefficient on an artificial transition zone formation model consisting of sandstone reservoir and shale cap rock and generated time-frequency spectral images using the continuous wavelet transform. Although thickness estimation performed by comparing spectral images according to different thicknesses and a spectral image from a trace of the seismic stack did not always provide accurate thicknesses, it can be applied to field data by obtaining training data in various environments and thus improving its accuracy.

Variations in Mutant Plants by chemical mutagen treatments of Dianthus superbus L. (술패랭이에서 화학돌연변이물질 처리에 따른 돌연변이 유기 및 변이 분석)

  • Lee, Kwang-Hoe;Lim, Jung-Dae;Yu, Chang-Yeon
    • Korean Journal of Medicinal Crop Science
    • /
    • v.8 no.4
    • /
    • pp.334-341
    • /
    • 2000
  • This study was conducted to determine the effects and optimum concentrantion of chemical mutagens, colchicine, EMS (ethyl methan sulfonate), MNU (1-methyl-3-1­-nitrosoguanidinenitro), sodium azide $(NaN_3)$ for induction of mutant plants. In order to induce the mutants of Dianthus superbus L, immature seed were pre-soaked in the warter adding each mutagens and concentration of EMS, colchicine, MNU, and sodium azide $(NaN_3)$. Comparision of morphological characteristic and seed germination in each mutant plants differed depending on mutagen sources and their concentrations. When 0.2% EMS were treated on seed, germination decreased to 12% while untreated control was germinated 76.6% for twenty days. Treatments of colchicine appeared higher germination than other mutagen but not survived. The survival rate was extremely decreased in MNU treatment at 0.5mM and chlorophyll-mutant plantlets were obtained by sodium azide treatment at 0.2mM. Chlorophyll mutants were produced by pre-soaking the immature seed of Dianthus superbus L. with mutagen, sodium azide. The control plants appeared normal green leaf color, while mutant plant after mutagenic treatment of immature seed results in yellow­-green stripes and albino in normal green leaf tissue. RAPD was carried out to check the genetic modification of regenerated plants by mutagen treatments at 0.2mM sodium azide. Three polymorphic DNA fragments out of thirty-seven obtained by RAPDs were observed in regenerated plants using five decamer primers.

  • PDF

The Relationship Between Measurements of Color and Water-Holding Capacity in Pork Loin (돈육 등심의 육색과 보수력 측정치 사이의 상관관계에 관한 연구)

  • Moon, Sang-Hun;Jeong, Jin-Yeon;Kim, Gap-Don;Cho, In-Cheol;Jeon, Jin-Tae;Joo, Seon-Tea;Park, Gu-Boo
    • Journal of Animal Science and Technology
    • /
    • v.51 no.4
    • /
    • pp.329-336
    • /
    • 2009
  • The objective of this study was to investigate the relationship between measurements of color and water-holding capacity (WHC) in pork loin. A total of 419 pork loins were sampled from crossbred (Landrace$\times$Jeju native black pig) F2 pigs at a commercial slaughter house. Meat color measurements (CIE $L^*$, $a^*$, $b^*$), chroma ($C^*$) and hue angle (h) were measured with the Minolta Chromameter and WHC was measured by filter paper fluid, drip loss and cooking loss. Also pH, moisture content and crude fat content were measured at 24 hr postmortem. CIE $L^*$, $b^*$ and h values had positive correlation with drip loss (r=0.52, 0.42), but CIE $a^*$ and $C^*$ values were not related to drip loss. Results showed that CIE $L^*$, $b^*$, and h color system was better than CIE $L^*$, $a^*$, $b^*$ color system to predict WHC, especially drip loss. pH was negatively correlated to drip loss (-0.42) and CIE $L^*$ (-0.67). Although CIE $L^*$ and pH were correlated to drip loss, the accuracy of their estimates for drip loss was 27% and 17%, respectively. Consequently, it was confirmed that meat color and WHC were not perfectly related and suggested that CIE $L^*$, $b^*$, and h color space should not be used independently to predict WHC of pork loin.

Determining the Size of a Hankel Matrix in Subspace System Identification for Estimating the Stiffness Matrix and Flexural Rigidities of a Shear Building (전단빌딩의 강성행렬 및 부재의 강성추정을 위한 부분공간 시스템 확인기법에서의 행켈행렬의 크기 결정)

  • Park, Seung-Keun;Park, Hyun Woo
    • Journal of the Computational Structural Engineering Institute of Korea
    • /
    • v.26 no.2
    • /
    • pp.99-112
    • /
    • 2013
  • This paper presents a subspace system identification for estimating the stiffness matrix and flexural rigidities of a shear building. System matrices are estimated by LQ decomposition and singular value decomposition from an input-output Hankel matrix. The estimated system matrices are converted into a real coordinate through similarity transformation, and the stiffness matrix is estimated from the system matrices. The accuracy and the stability of an estimated stiffness matrix depend on the size of the associated Hankel matrix. The estimation error curve of the stiffness matrix is obtained with respect to the size of a Hankel matrix using a prior finite element model of a shear building. The sizes of the Hankel matrix, which are consistent with a target accuracy level, are chosen through this curve. Among these candidate sizes of the Hankel matrix, more proper one can be determined considering the computational cost of subspace identification. The stiffness matrix and flexural rigidities are estimated using the Hankel matrix with the candidate sizes. The validity of the proposed method is demonstrated through the numerical example of a five-story shear building model with and without damage.

Modified AWSSDR method for frequency-dependent reverberation time estimation (주파수 대역별 잔향시간 추정을 위한 변형된 AWSSDR 방식)

  • Min Sik Kim;Hyung Soon Kim
    • Phonetics and Speech Sciences
    • /
    • v.15 no.4
    • /
    • pp.91-100
    • /
    • 2023
  • Reverberation time (T60) is a typical acoustic parameter that provides information about reverberation. Since the impacts of reverberation vary depending on the frequency bands even in the same space, frequency-dependent (FD) T60, which offers detailed insights into the acoustic environments, can be useful. However, most conventional blind T60 estimation methods, which estimate the T60 from speech signals, focus on fullband T60 estimation, and a few blind FDT60 estimation methods commonly show poor performance in the low-frequency bands. This paper introduces a modified approach based on Attentive pooling based Weighted Sum of Spectral Decay Rates (AWSSDR), previously proposed for blind T60 estimation, by extending its target from fullband T60 to FDT60. The experimental results show that the proposed method outperforms conventional blind FDT60 estimation methods on the acoustic characterization of environments (ACE) challenge evaluation dataset. Notably, it consistently exhibits excellent estimation performance in all frequency bands. This demonstrates that the mechanism of the AWSSDR method is valuable for blind FDT60 estimation because it reflects the FD variations in the impact of reverberation, aggregating information about FDT60 from the speech signal by processing the spectral decay rates associated with the physical properties of reverberation in each frequency band.

Relationship Between Ultrasonic and Carcass Measures for Meat Qualities in Hanwoo Steers (한우 거세우에 있어서 생체단층조사기법에 의한 육질판정과 도축 육질 측정치와의 관계)

  • Kim, H. C.;Lee, D. H.;Choi, S. B.;Jeon, G. J.
    • Journal of Animal Science and Technology
    • /
    • v.45 no.2
    • /
    • pp.183-190
    • /
    • 2003
  • Data from live animal real time ultrasound (RTU) measures from 127 Hanwoo steers were used to assess nutritional physiology and relationship between RTU measures and real carcass measures represented meat quality. Traits considered were longissimus muscle area, fat thickness, and marbling score imaged and scanned using RTU by month and those of carcass measures at about 24 month of age. On this study, increasing pattern for longissimus muscle area would be closely related to growth pattern (p<0.01) and it of fat thickness would be related to quadratic effect of ages. Marbling score would be related to aging, that is, individual deviates of scores were distinctly characterized after 17 mo. even though they were started at about 11 mo. Correlation estimates between RTU measures and corresponding carcass traits were over 0.6 after 17 month of age for all traits considered and these estimates were high as 0.90 after 22 month of age. From this study, Real-time ultrasound measurement would be valuable after 15-17 mo. and measures at about 22 mo. would be helpful to decide age for slaughtering. To utilize these techniques for beef cattle breeding via progeny testing program, 15 mo. RTU measures would be efficiency rather than 12 mo. of other beef breeds. Further study to find genetic variation of RTU measures was needed to utilize these technologies for beef breeding.

Identification of a SNP in Chicken CaSR Gene and Its Effect on Economic Traits (닭의 CaSR 유전자내 단일 염기 변이 탐색 및 경제 형질간의 연관성 분석)

  • Hong, Y.S.;Oh, J.D.;Lee, J.H.;Kong, H.S.;Choi, C.H.;Lee, S.S.;Jeon, G.J.;Lee, H.K.
    • Korean Journal of Poultry Science
    • /
    • v.34 no.2
    • /
    • pp.151-156
    • /
    • 2007
  • The Function of the calcium sensing receptor (CaSR) is to control calcium levels by altering PTH (parathyroid hormone) secretion and renal calcium resorption. The influence of calcium on the basal and stimulated release of several hormones from chicken pituitary glands has been determined in vitro. The objective of this study was to identify SNP in chicken CaSR gene and to investigate the effect of the SNP on economic traits. The sequencing analysis method was used to identify nucleotide polymorphisms within chicken CaSR gene. This study identified SNP at position 1949 bp(Genebank accession No : XM_416491) in the exon 1. The SNP changed the amino acid to alanine(GCC) from serine(TCC). This SNP showed three genotypes, AA, AS and SS by digestion with the restriction enzyme NcoⅠ using the PCR-RFLP method. The A963S showed significant effect only on the first lay day (P<0.05) in Leghorn population. Leghorn with the genotype AA had significantly faster the first lay day(137.6) than the genotype AS(143.0, P<0.05). Also, the A963S showed significant effect only on the first lay day(P<0.05) and mean of egg weight(P<0.05) in KNC population. KNC with the genotypes AA ans AS had significantly faster the first lay day (151.0 and 152.6, respectively) than the genotype SS(159.4, P<0.05). And the genotypes SS had significantly heavier the mean of egg weight(50.4 kg, P<0.05) than the genotype AA ans AS (47.5 and 47.8 kg, respectively). According to result of this study, an a allele of the A963S was found to have a significant effect on the first lay day. It will be possible to use this SNP marker on selecting chicken to improve the first lay day.

Effect of Sequence Variation in Bovine Mitochondrial DNA D-loop Region on Economic Traits for Hanwoo (한우 경제형질에 미치는 Mitochondrial DNA D-loop 영역의 염기서열 변이효과)

  • Oh, J.D.;Yoon, D.H.;Kong, H.S.;Lim, H.J.;Lee, H.K.;Cho, B.W.;Hong, K.C.;Jeon, G.J.
    • Journal of Animal Science and Technology
    • /
    • v.45 no.6
    • /
    • pp.933-938
    • /
    • 2003
  • This study was performed to analyse the sequences of variations of mtDNA D-loop and their effects on carcass traits in Hnawoo(Korean cattle). The resulting sequences were compared with previously published sequences for other cattle breeds(GenBank J01394). The PCR was used to amplify a total of 964 bp between nucleotide 15758 and 383 within D-loop region of mtDNA using specific primers. Twenty five polymorphic sites by nucleotide substitution were found in mtDNA of Hanwoo. The frequencies of positions at 169, 16042, 16093, 16119, 16255 and 16302 nt with high levels of sequence polymorphism were 0.891, 0.117, 0.109, 0.182, 0.197 and 0.117, respectively. The substitution effect at 169 and 16119 nt was found significant on marbling score. Also substitution effect at 169 and 16042 nt was highly significant(p〈0.01) on backfat. thickness. Polymorphism of mtDNA sequence in D-loop region could be useful for the analysis of cytoplasmic genetic variation and associations with the other economically important traits and maternal lineage analysis in Hanwoo.

Assessment of the fonction of Retention Pond, A-71 Motorway, France (프랑스 A-71고속도로변 Retention Pond의 기능평가)

  • 이평구;이재영
    • Journal of Korea Soil Environment Society
    • /
    • v.2 no.1
    • /
    • pp.73-81
    • /
    • 1997
  • Retention ponds have been dug along some of the motorways to control water flow during rainstorms and to minmize environmental pollution. A retention pond located at Les Ardilleres about 20km South of Orleans along the A-71 motorway has been selected to evaluate the effectiveness of such a pond as a trap for heavy metals. Based on the "index of geoaccumulation" and the "enrichment factor" normalized to Fe introduced by Muller in 1979 and by Helz in 1976, respectively, the degree of contamination by heavy metals for the roadside soil and the settling particles was evaluated. As expected, the contamination was very severe in the roadside soil, while it was not so great in the settling particles. Using these methods, cadmium anomaly was traced in the settling particles of the retention pond, their occurrence being attributed partly to natural and partly to anthropogenic pollution. The estimated input of heavy metals associated with settling particles to the pond was 0.9 g/day Pb, 2.1 g/day Zn and 6mg/day Cd. A tentative mass balance of Pb and Zn originated by motor vehicles suggested that only 5 to l1% of heavy metals deposited on the surface of the motorway is carried to the retention pond by runoff water ; suggestions are made to improve their efficiency.ve their efficiency.

  • PDF