• Proceedings of the Korean Information Science Society Conference
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• 2012.06c
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• pp.166-168
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• 2012

바이오 문헌으로부터의 의미 있는 객체 추출 및 상호작용 관계 추출은 수 많은 바이오 문헌으로부터 유용한 정보를 얻기 위한 필수적인 과정이다. 특히 문헌으로부터 유전자 또는 단백질 이름과 같은 바이오 객체를 정확하게 인지하는 것은 새로운 객체인식의 어려움과 객체를 찾기 위한 특징 패턴의 다양성으로 인해 도전적인 과제로 남아있다. 본 논문에서는 전처리 과정을 거친 문헌 데이터로부터 12개의 의미 있는 속성들을 선택하였다. 선택된 속성에 데이터마이닝 기법중 하나인 속성 추출 기법을 적용하여 객체를 분류하는데 있어 의미 있는 속성들을 추출하였다. 특징 추출 방법과 분류 알고리즘이 분류 성능에 미치는 영향을 평가하기 위해 각 방법의 정확도를 사용하여 분류 성능을 비교였으며, Gain Ratio Attribute Evaluation과 Symmetrical Uncertainty Attribute Evaluation 기법에 의해 추출된 속성이 가장 정확한 분류 성능을 보여주었다.

• Korean journal of applied entomology
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• v.34 no.2
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• pp.100-105
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• 1995

A whole body extract (WBE), a crude nuclear fraction, of aphids was prepared and used to identify the proteins which bound specifically to 5'-upstream regions of the transcription initiation site of the aphid ribosomal RNA gene (rDNA). While DNA fragment (-263/-195) was bound by only one specific 53 kDa protein, two DNA fragments, A(-194/23) and B(-393/-264), were commonly bound by three proteins (52 kDa, 50 kDa and 40 kDa). It was also revealed that the formation of he DNA-protein complex requires a cation.

• The KIPS Transactions:PartB
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• v.16B no.5
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• pp.359-366
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• 2009

Analysis of 3-dimensional (3D) protein structure plays an important role of structural bioinformatics. The protein structure alignment is the main subjects of the structural bioinformatics and the most fundamental problem. Protein Structures are flexible and undergo structural changes as part of their function, and most existing protein structure comparison methods treat them as rigid bodies, which may lead to incorrect alignment. We present a new method that carries out the flexible structure alignment by means of finding SSPs(Similar Substructure Pairs) and flexible points of the protein. In order to find SSPs, we encode the coordinates of atoms in the backbone of protein into RDA(Relative Direction Angle) using local similarity of protein structure. We connect the SSPs with Floyd-Warshall algorithm and make compatible SSPs. We compare the two compatible SSPs and find optimal flexible point in the protein. On our well defined performance experiment, 68 benchmark data set is used and our method is better than three widely used methods (DALI, CE, FATCAT) in terms of alignment accuracy.

• Journal of the East Asian Society of Dietary Life
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• v.24 no.6
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• pp.853-861
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• 2014

Cookies, muffins and baguettes were formulated with Korean wheat flour and compared with those made from imported wheat flour in terms of total phenol content, antioxidant activity, and in vitro protein digestibility (IVPD). Chunnyencho and Honghawsi were added to improve quality of the bakery products. Addition of Chunnyencho did not show any significant improvement, whereas Honghawsi increased total phenol content of cookies. Total phenol content in 80% ethanol extract of muffins prepared with Korean wheat flour was 1.5 times higher than those made from imported wheat flour, whereas total phenol content was 1.2 times higher in the 80% methanol extract of baguettes prepared with imported wheat flour compared to those made with Korean wheat flour. Overall, total phenol content of Korean wheat flour was higher than that of imported wheat flour because total phenol content was higher in 80% ethanol extracts than in 80% methanol extracts. Antioxidant activity was not significantly different between ethyl acetate extracts of bakery products from imported wheat and Korean wheat, whereas antioxidant activity of 80% methanol extract of muffins with Korean wheat was 2.4 times higher than that from imported wheat. IVPD was not significantly different in any bakery products made from imported wheat or Korean wheat but was higher in baguettes than cookies or muffins. Conclusively, bakery products made from Korean wheat had higher total phenol content and antioxidant activity than imported wheat.

• Proceedings of the Korean Institute of Intelligent Systems Conference
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• 2002.12a
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• pp.473-477
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• 2002

세포내에서 특정 단백질이 합성되어 이용되는 것을 단백질의 발현이라 한다. 이러한 단백질의발현을 조사하는 작업은 세포내 대사과정을 밝혀내는 데 있어서 매우 중요한 역할을 담당하고 있다. 단백질의 발현을 조사하기 위해서는 세포로부터 추출하여 정제한 단백질이 어떤 단백질인지를 확인하는 작업이 필요한데 현재로써는 확인하고자 하는 단백질 효소로 분해하여 분해된 조각들의 질량을 측정하여 기존에 알려진 단백질들을 분해했을 때 이론상 나을 수 있는 조각들의 무게와 비교하여 가장 근접한 단백질을 찾아내는 질량분석기법(mass Spectrometry)이 널리 사용된다. 그러나 이 방법은 확인하고자 하는 단백질의 아미노산 서열이 알려져 있을 경우에만 사용할 수 있다는 한계점을 가지고 있다. 본 논문에서는 이러한 한계를 계산적인 방법으로 극복하고자 동일단백질을 여러가지 효소로 분해하여 나오는 조각들의 질량을 측정하고 이들을 조합하여 원래 단백질의 아미노산 서열을 알아낼 수 있는 알고리즘을 제안한다.

• Proceedings of the Korea Society of Poultry Science Conference
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• 2004.11a
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• pp.31-32
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• 2004

In order to at day evaluate effect of dietary 2.0 % brown seaweed(Undaria pinnatifida) with bean extract on performance and nutrients utilization during acute phase response, one day-old broiler chicks were fed basal diet and diets substituted with 2.0 % brown seaweed and 2.0 % brown seaweed with bean extract instead of wheat bran in basal diet for 4weeks. Dietary 2.0 % brown seaweed with bean extract enhanced dietary ME value and protein accumulation due to the increased NB and decreased UAN excretion. increased feed intake during acute phase response and had the highest body weight among birds fed experimental diets. The resulted indicated that dietary 2.0 % brown seaweed with bean extract improved performance of broiler chicks due to the increased protein accumulation during acute phase response.

• Journal of Plant Biotechnology
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• v.48 no.2
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• pp.106-114
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• 2021

We evaluated the anti-cancer activity against human prostate cancer cells and the associated molecular mechanism of extracts from the branches of Rhamnus yoshinoi (RYB). Treatment with RYB suppressed viability of human prostate cancer cells (PC-3) and decreased protein levels of both β-catenin and T-cell factor 4 (TCF4). This was reflected in reduced TCF4 mRNA, but not decreased β-catenin mRNA. PC-3 cells were pretreated with the proteosome inhibitor MG132 before treatment with RYB, which blocked RYB-mediated down regulation of β-catenin in PC-3 cells, thus confirming that RYB promotes the proteasomal degradation of β-catenin. RYB induced β-catenin phosphorylation, and GSK-3β inhibition by LiCl blocked the phosphorylation and proteasomal degradation of β-catenin by RYB. These results suggest that GSK-3β may be an important upstream kinase for RYB-mediated regulation of β-catenin. Finally, GC/MS analysis of RYB identified 18 compounds. Based on these findings, RYB shows potential for development as a therapeutic agent for prostate cancer.

• Korean Journal of Food Science and Technology
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• v.24 no.4
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• pp.382-386
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• 1992

Effect of temperature on some quality characteristics of aqueous extracts of sea mustard was investigated. The concentration of total solids and protein and their yields in the extracts were increased as the extraction temperature raised from $50^{\circ}C$ to $100^{\circ}C$ during initial period of extraction. However the lower values of the percent of supernatant was obtained at $50^{\circ}C$ and $100^{\circ}C$. The percent of yields of solids and protein for 1 hour extraction at $100^{\circ}C$ were 21.56% and 4.7%, respectively. The highest viscosity, which was $2.5{\sim}4.0$ times of higher values of the other extracts, was obtained by 2 hours extraction at $100^{\circ}C$. The turbidity was gradually decreased after 1 hour extraction. The activation energy calculated for initial increase rate of solid and protein concentration were 1.18 and 3.90 Cal/mole, respectively.

• Journal of KIISE:Software and Applications
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• v.31 no.12
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• pp.1602-1610
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• 2004

As various genome projects have produced enormous amount of biosequence data, functional sequence analysis in terms of tile nucleic acid and protein becomes very significant. In functional genomics and proteomics, the functional analysis of each individual gene and protein remains a big challenge. Contrary to traditional studies, which regard proteins as not components of a whole protein interaction network but individual entities, recent studies have focused on examining functions and roles of each individual gene and protein in view of a whole life system. In this regard, it has been recognized as an appropriate method to analyze protein function on the basis of synthetic information of its interaction and domain modularity. In this context, this paper introduces the PIVS (Protein-protein interaction Inference & Visualization System), which predicts the interaction relationship of input proteins by taking advantage of information on homology degree, domain modules which input sequences contain, and protein interaction relationship. The information on domain modules can increase the accuracy of the function and interaction relationship analysis in terms of the specificity and sensitivity.

• Journal of Food Hygiene and Safety
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• v.31 no.6
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• pp.445-450
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• 2016

Thermal-stable soluble proteins (TSSP) in livestock products has been recently reported. Therefore, the development of antibodies and immunoassay using a TSSP is useful because the presence of TSSP can be measured on processed food. In this study, the existence of TSSPs in pork fat and meat was confirmed and their antigenicity was investigated. The extracts from pork fat and meat by heating method were analyzed by SDS-PAGE with 5% stacking and 12% separating gels. The protein profiles from the raw pork fat and meat extracts (major band ranged 25 to 100 kDa) without cooking and heating treatments were significantly different compared to those from cooked and heated pork fat and meat extracts (several major bands > 100 kDa and < 30 kDa). This meant that non thermal-stable soluble proteins ranged from 25 to 100 kDa may be denaturated to insoluble proteins by cooking and heating treatments, and TSSPs were in pork fat and meat at kept their properties. The confirmed TSSPs were used as an immunogen to investigate their antigenicity. Eight mice (5 mice for pork fat and 3 mice for pork meat) were separately immunized with the TSSPs of pork fat and meat, and the anti-sera obtained from the immunized mice showed high titer values. Polyclonal antibodies against each target protein showed the specific reaction to pork fat and meat, individually. These indicated that TSSP could be used as an immunogen to produce antibodies such as monoclonal and polyclonal antibodies. In addition, antibodies specific to TSSP from pork fat and meat may be used as a bio-receptor in immunoassays for the identification of fraudulent adulteration with pork fat and meat in livestock products.