• 한국작물학회:학술대회논문집
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• 한국작물학회 2022년도 추계학술대회
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• pp.212-212
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• 2022

Soluble starch synthase (SS) IV-2 is one of the starch synthase gene family members and responsible for starch chain elongation interacting with other rice eating and cooking quality controlling genes (e.g., AGPlar and PUL). SSIV-2 is mainly expressed in leaves, especially at grain-filling stage and its alleles can significantly affect rice quality. Here, we investigated the genetic diversity and population structure analyses of SSIV-2 gene by using 374 rice accessions. This rice set was grouped into 320 cultivated bred (subsequently classified into temperate japonica, indica, tropical japonica, aus, aromatic and admixture) and 54 wild rice. Haplotyping of cultivated rice accessions provided a total of 7 haplotypes, and only three haplotypes are functional indicating four substituted SNPs in two exons of chromosome 5: T/A and G/T in exon 4, and C/G and G/A in exon 13. Including the wild, a highest diverse group (0.0041), nucleotide diversity analysis showed temperate japonica (0.0001) had a lowest diversity value indicating the origin information of this gene evolution. Higher and positive Tajima5s D value of indica (1.9755) indicate a selective signature under balancing selection while temperate japonica (-0.9018) was in lowest Tajima's D value due to a recent selective sweep by positive selection. We found the most diverse genetic components of the wild in PCA but shared in some portion with other cultivated groups. Fixation index (F_ST-values) and phylogenetic analysis indicate a closer relationship of the wild with indica (F_ST=0.256) than to its association to both of temperate japonica (F_ST=0.589). Structure analysis shows a clear separation of cultivated subpopulations at every K value, but genetic components were admixed within the wild illustrating the same genetic background with japonica and indica in some proportion.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2022년도 추계학술대회
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• pp.215-215
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• 2022

Starch synthase proteins (SSI, SSII and SSIII) in rice are mainly involved in amylopectin synthesis mediating its chain elongation, and the functional loss of SSII can increase amylose accumulation through decreasing of amylopectin chain proportions. For purposes of identifying functional haplotypes and evolutionary analyses of this gene, SSII-1, we investigated 374 rice accessions belonging to different subgroups of origins. We subsequently performed bioinformatic analyses on their variations through haplotyping, resequencing and structuring based on different classified populations. Haplotyping of cultivated rice accessions using genetic variations within SSII-1 genomic region of chromosome 10 revealed a total of 8 haplotypes, representing 6 functional haplotypes by 4 non-synonymous SNPs of three different exons (1, 4 and 10), which effect on protein structure. Higher nucleotide diversity value was found in wild group (0.0055) compared to any of cultivated subpopulations, of which aus showed the most reduction of diversity value (0.0003). Tajima's D analysis exhibits the most Tajima's D value only in admixture group (0.3600) which appears to be the cause of a sudden population contraction by rare alleles scarcity. A clear separation of some wild accessions from the admixed cultivated subpopulations was observed in PCA and phylogenetic analysis. Similar admixed pattern of population structure was estimated with an increased K values of 2 to 8 where genetic components of almost all cultivated subpopulations were shared with the wild which can also be subsequently estimated by very low F_ST-values by -0.011 (wild-aromatic) and -0.003 (wild-admixture).

• 한국작물학회:학술대회논문집
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• 한국작물학회 2022년도 추계학술대회
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• pp.217-217
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• 2022

Pullulanase (PUL), a debranching enzyme, has been utilized in hydrolyzing the a-1,6 glucosidic linkages in starch, amylopectin, pullulan, as well as related oligosaccharides. It has also been indicated that PUL is a novel indicator of inherent RS (Resistant Starch) formation in rice. In this study, we performed haplotype analysis on 320 bred rice accessions, and additional 54 wild accessions were added to study genetic diversity along with other population-based analyses of the PUL gene. Through these investigations, we summarized a total of 10 functional (non-synonymous) SNPs from 7 different exons on chromosome 4. There were 10 haplotypes, of which only six haplotypes were functional, implicating different subpopulations. Diversity reduction was noticed in temperate japonica (0.0005) compared to the highest one (aus, 0.0154), illustrating their higher genetic differentiation by F_ST-value (0.926). The highest Tajima^ D value was observed in indica (3.6613), indicating PUL gene domestication signature under balancing selection, while the lowest Tajima's D value was found in temperate japonica (-2.2191) which might have undergone under positive selection and purified due to the excess of rare alleles. PCA, population structure, and phylogenetic analyses provide information on the genetic relatedness between and or among the cultivated subpopulations and the wild based on PUL genomic region.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2022년도 추계학술대회
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• pp.218-218
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• 2022

Granules-bound starch synthase II (GBSSII), one of the isoforms of granule-bound starch synthase (GBSS), is responsible for amylose synthesis by expressing in non-storage tissues such as leaf, stem, root, and pericarp. Up to date, little is known about this gene functions and basic knowledge of heritable characteristics of this gene, GBSSII. We identified functional haplotypes and performed evolutionary analyses on the GBSSII using 374 rice accessions (320 Korean bred and 54 wild) based on the classified groups. A total of 14 haplotypes were found, and almost all haplotypes (13) were functional, carrying 19 non-synonymous SNPs in two exons (exons 1 and 2). The lowest nucleotide diversity was detected in Tropical japonica (0.00145), while the highest pi-value was in Aus (0.01081), illustrating the signal of this gene evolution. The highest Tajima's D value in Aus (1.6380) indicates GBSSII gene domestication signature under balancing selection, while the lowest Tajima's D value in Temperate japonica (-0.8243) highlights that they were under positive selection, which may be purified due to the excess of rare alleles. The highest genetic differentiation was observed between Tropical japonica and aroma (F_ST = 0.921928). In contrast, the highest interbreed level was detected in Aus-admixture (F_ST = -0.20157). The genetic relatedness between and or among the wild and cultivated subpopulations was revealed through PCA, population structure, and phylogenetic analyses.

• 한국제4기학회지
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• 제17권2호
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• pp.157-159
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• 2003

Much of northern Asia is lacking in high-resolution palaeoclimatic data coverage. This vast region thus represents a sizeable gap in data sets used to reconstruct hemispheric-scale temperature trends for the past millennium. To improve coverage, we present a regional-scale composite of four tree-ring width records of Siberian pine and Siberian larch from temperature-sensitive alpine timber-line sites in Mongolia. The chronologies load closely in principal components analysis (PCA) with the first eigenvector accounting for over 53% of the variance from ad 1450 to 1998. The 20-year interval from 1974 to 1993 is the highest such growth period in this composite record, and 17 of the 20 highest growth years have occurred since 1946. Thus these trees, unlike those recently described at some northern sites, do not appear to have lost their temperature sensitivity, and suggest that recent decades have been some of the warmest in the past 500 years for this region. There are, however, comparable periods of inferred, local warmth for individual sites, e.g., in 1520-1580 and 1760-1790. The percent common variance between chronologies has increased through time and is highest (66.1%) in the present century. Although there are obvious differences among the individual chronologies, this result suggests a coherent signal which we consider to be related to temperature. The PCA scores show trends which strongly resemble those seen in recent temperature reconstructions for the Northern Hemisphere, very few of which included representation from Eurasia east of the Ural Mountains. The Mongolia series therefore provides independent corroboration for these reconstructions and their indications of unusual wanning during the twentieth century.

• 한국광학회지
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• 제19권4호
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• pp.270-275
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• 2008

본 논문에서는 집적 영상의 획득과 복원을 통하여 장애물에 가려진 물체를 인식하는 기술은 제안하고 구현하였다. 집적 영상의 복원은 해당되는 화소 세기의1차 확률적 특성인 평균으로 구한다. 복원평면까지의 거리는 2차 확률적 특성인 표준 편차를 이용하여 구하고3차원 물체의 경계(edge)를 검출한다. 표준 편차의 합을 최소로 하는 거리에서 복원된 영상을 표적인식에 이용한다. 표적인식은 주성분 분석(principle component analysis, PCA) 분류기를 복원된 영상에 적용하였다. 표적 분류에 대한 판정은 분류기에 의해서 투영된 클래스의 평균 특징 벡터와 테스트 특징 벡터간의 유클리드 거리(Euclidean distance)를 이용한다. 실험 및 시뮬레이션을 통하여 가려진 표적을 본 논문에서 제안한 방법을 통하여 오차 없이 분류하였다.

• 생명과학회지
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• 제22권5호
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• pp.595-599
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• 2012

최근 알러지성 비염, 알러지성 피부염, 알러지성 천식, 알러지성 과민반응 등과 같은 질병이 점차 늘어나고 있으며 그에 따른 효과적인 치료제나 효율적인 치료법이 시급한 실정이다. 본 연구에서 동물모델과 비만세포 탈과립작용에서 Platycodin D가 포함된 도라지 추출물(PG-Platycodin D)의 항알러지 효과를 연구하였다. $In$ $vivo$ 상에서 PG-Platycodin D가 항원-항체 반응에 의한 알러지 반응을 효과적으로 억제하는지 살펴보기 위한 아나필락틱 쇼크 평가에서 Platycodin D의 함량이 1%에서 5%까지 증가한 도라지 추출물일수록 $in$ $vivo$ 수준에서의 알러지반응이 억제되는 것을 확인할 수 있었다. 또한 항원-항체 반응에 의해 매개된 RBL-2H3 비만세포의 탈 과립현상에 대한 PG-Platycodin D의 효과를 알아보기 위한 ${\beta}$-hexosaminidase의 방출량 측정에서 Platycodin D의 함량이 1%에서 5%까지 포함된 도라지 추출물에서 농도가 증가함에 따라 ${\beta}$-hexosaminidase의 방출량이 농도 의존적으로 감소하는 것을 알 수 있었다. 또한, PG-Platycodin D의 처리가 항원-항체 반응에 의해 매개된 RBL-2H3 비만세포 내의 IL-3의 발현이 감소하는 양상을 확인할 수 있었다. 이들의 결과로부터 Platycodin D가 포함된 도라지 추출물이 IL-3의 유전자 발현을 억제함으로써 항원-항체 반응에 의한 탈 과립현상을 억제하여 알러지 작용을 제어하는 가능성을 확인하였다.

• 정보처리학회논문지D
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• 제13D권2호
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• pp.287-292
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• 2006

주성분 분석(Principal component hnidvsis : PCA)은 물체 인식 기술에서 가장 효율적인 방법으로 인정되고 있으나 영상 크기의 제곱에 비례하여 계산량이 증가하고 조명의 변화에 따라 정확성이 떨어지는 문제점이 있다. 본 논문에서는 이러한 문제점을 해결하기 위해서 웨이블렛변환(Wavelet Transform)과 히스토그램 평활화(Histogram Equalization)를 사용하였다. 계산량이 증가하는 문제는 웨이블렛 변환으로 낮은 해상도의 영상을 사용하여 해결하였다. 조명의 변화에 따라 정확성이 떨어지는 문제는 히스토그램 평활화를 사용하여 영상의 대조를 크게 하고 휘도치의 분포를 펼침으로써 해결하였다. 제안한 기법으로 실험한 결과 조명변화에 영향을 최소화하여 인식률이 향상되고, 웨이블렛 변환으로 처리할 영역을 줄여 처리 시간이 크게 단축됨을 보여 주었다.

• 생명과학회지
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• 제21권10호
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• pp.1364-1369
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• 2011

제 1형 과민반응은 비만세포에 의해 매개되는 알러지 반응으로서, 예기치 못한 알러젠에 의해 비만세포가 활성화 되어 탈 과립 되면서 히스타민등과 같은 여러 가지 매개체들을 분비하면서 과도하게 면역반응을 유도하게 된다. 주박(Korean rice wine lees)은 청주, 약주 등의 술을 걸러내는 과정에서 생기는 양조 부산물로서, 최근들어 청주를 걸러내는 과정에서 생기는 술 지게미의 생리기능에 대한 연구가 활발하게 진행되고 있다. 본 연구에서는 주박의 ethyl acetate (EA) 추출물을 이용하여 비만세포에서의 탈과립 억제 효과를 측정하였다. 그 결과 주박 EA 추출물이 탈과립의 표지인 ${\beta}$-hexosaminidase의 양을 농도 의존적으로 억제하는 것을 관찰하였고, 이러한 탈과립억제 현상이 다양한 사이토카인 중 IL-3과 IL-13의 양을 감소시킴으로써 매개된다는 사실을 RT-PCR을 통해 확인하였다. 또한 쥐에서 passive cutaneous anaphylaxis (PCA)를 유도하여 EA를 경구투여 했을 때 anaphylactic 증상을 효과적으로 억제하는 것을 관찰하였다. 이러한 결과들은 주박 EA 추출물이 항 알러지 약물의 개발에 잠재적인 후보물질이 될 수 있음을 시사한다.

• International Journal of Industrial Entomology and Biomaterials
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• 제14권1호
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• pp.23-32
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• 2007

The nature of genetic variation and diversity among the 65 multivoltine silkworm genotypes was evaluated for 16 post cocoon characters. The components of genetic variation revealed higher PCV (60.487%) and GCV (44.56%) for evenness (variation 1) followed by cohesion (PCV=55.38%, GCV=40.36%) and non-broken filament length (PCV=32.05%, GCV=31.28%). The higher heritability ($h^2$ in broad sense) was observed for boil-off loss (95.6%) followed by non-broken filament length (95.22%). The both genotypic and phenotypic correlation indicated significant positive correlation of filament length with non-broken filament length, silk recovery, raw silk, neatness, and low neatness; and negative correlation with denier, renditta and silk waste. The principal component analysis (PCA) revealed 75.381 % of total variance from the five principal components extracted. On the basis of Mahalonobis' $D^2$ values (Ward's minimum variance), the sixty-five multivoltine silkworm genotypes were classified in to 9 clusters with substantial inter and intra cluster distances. Number of genotypes included in different clusters varied from 3 to 17. The results indicated that the optimum distance obtained in cluster VII (15.059) along with higher cluster mean values especially for filament length, non broken filament length, renditta, silk recovery, silk waste, and raw silk emphasized the utilization of these genotypes in the conventional silkworm breeding programme for improvement of multivoltine silk fibre quality. The possibility of exploiting genetic variation in post cocoon traits for efficient breeding programme is discussed.