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http://dx.doi.org/10.7745/KJSSF.2016.49.5.480

Impacts of Cropping Systems on the Distribution of Soil Microorganisms in Mid-mountainous Paddy  

Kang, Ui-Gum (National Institute of Crop Science, RDA)
Shin, Woon-Chul (National Institute of Crop Science, RDA)
Choi, Jong-Seo (National Institute of Crop Science, RDA)
Lee, Yong-Bok (Agricultural and Life Science, Gyeongsang National University)
Lee, Young-Han (Gyeongsangnam-do Agricultural Research and Extension Services)
Publication Information
Korean Journal of Soil Science and Fertilizer / v.49, no.5, 2016 , pp. 480-488 More about this Journal
Abstract
Soil microbes are widely well known to play an important role for sustainable agriculture in terms of crop healthy cultivation and environmental conservation. In this context, the distributional characteristics of soil microbes according to cropping systems were investigated under rice (R)-rice (R), rice (R)-barley (B)-rice (R), and soybean (S)-barley (B)-soybean (S) cropping condition to get basic informations for sustainable agriculture, where barley was grown for winter, in mid-mountainous loam paddy located at the altitude of 285 m above sea level in Sangju area from 2014 to 2015. Estimating from microbial communities by fatty acid methyl ester (FAME) method, a total biomass of bacteria, actinomycetes, and fungi in R-B-R plot was 37% and 40% higher than that in S-B-S and R-R plots, respectively (p < 0.05). In especial, bacteria and fungi were more in R-B-R plot than those in any other ones. B. japonicum, AMF, and mesophilic Bacillus sp. were also greater in S-B-S plot than those. In the community distribution, however, bacteria and actinomycetes showed comparatively high values in S-B-S plot relative to either R-R or R-B-R plot including rice, in which fungi outstanding. In the correlation between microbial biomass and soil properties changed by the cropping, bacteria was positively correlated with C:N ratio; actinomycetes with exchangeable Ca; fungi with available $P_2O_5$ (p < 0.05). While these microbes showed negative response to water stable aggregates of soil.
Keywords
Microbial distribution; Cropping system; Rice; Soybean; Barley;
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1 Kang, U.G., P. Somasegaran, H.J. Hoben, and B.B. Bohlool. 1991. Symbiotic potential, competitiveness, and serological properties of Bradyrhizobium japonicum indigenous to Korean soils. Appl. Environ. Microbiol. 57:1038-1045.
2 Kang, U.G., C.Y. Park, M.T. Youn, S.U. Choi, and H.S. Ha. 1997. Relatedness of naturalized Bradyrhizobium japonicum populations with soil physico-chemical characteristics as affected by paddy-upland rotation. J. Korean Agric. Chem. Biotech. 40(5):438-441.
3 Kieft, T.L., J.K. Fredrickson, J.P. McKinley, B.N. Bjornstad, S.A. Rawson, T.J. Phelps, F.J. Brockman, and S.M. Pfiffner. 1995. Microbiological comparison within and across contiguous lacustrine, paleosol, and fluvial subsurface sediments. Appl. Environ. Microbiol. 61:749-757.
4 Kim, H.S., G.S. Chae, S.E. Yoon, and Y.S. Lee. 2015. A study on improving dry-field farming competitiveness in response to the expansion of market opening(Year 1 of 3). Krei research report R760. ISBN 978-89-6013-821-693520.
5 Kim, S.H. and S.K. Lee. 1992. Role of crops and residues, and fertilization to changes of microbial population, soil chemical properties and plant growth. I. Microbial population in the habitat. J. Korean Soc. Soil Sci. Fert. 25(4):370-377.
6 Nelson, A., B. Frick, J. Clapperton, S. Quideau, and D. Spaner. 2008. Does wheat cultivar choice affect crop quality and soil microbial communities in cropping systems? Available on line at : 16th IFOAM Organic World Congress, Modena, Italy. June 16-20, 2008 Archieved at http://orgprints.org/view/projects/conference.html.
7 NICS (National Institute of Crop Science). 2010. Practical research plan for 2010. National Institute of Crop Science, Suwon, Korea.
8 NICS (National Institute of Crop Science). 2014. An analysis handbook for the environment of staple crop. National Institute of Crop Science, Suwon, Korea.
9 Park, C.Y., U.G. Kang, G.S. Hwang, and Y.T. Jung. 1993. Changes of crop yields according to cropping systems and fertilizing levels in paddy-upland rotation soils. RDA J. Agri. Sci. 35(1)(S & F):281-288.
10 Park, H.M., H.W. Kang, U.G. Kang, K.B. Park, S.S. Lee, and S.D. Song. 1999. Effects of arbuscular mycorrhiza inoculation and phosphorus application on early growth of hot pepper (Capsicum annum L.). Korean J. Soil Sci. Fert. 32(1):68-75.
11 Parr, J.F., R.I. Papendick, S.B. Hornick, and R.E. Meyer. 1992. Soil Quality: attributes and relationship to alternative and sustainable agriculture. Am. J. Altern Agric. 7:5-11.   DOI
12 Casida, Jr, L.E. 1992. Competitive ability and survival in soil of Pseudomonas strain 679-2, a dominant, nonobligate bacterial predator of bacteria. Appl. Environ. Microbiol. 58:32-37.
13 Rengel, Z. and P. Marschner. 2005. Nutrient availability and management in the rhizosphere; exploiting genotypic difference. New Phytol. 168:305-312.   DOI
14 RDA (Rural Deveopment Administration). 2010. Soil microorganism workshop. Rural Deveopment Administration, Suwon, Korea.
15 Schutter, M.E. and R.P. Dick. 2000. Comparison of fatty acid methyl ester (FAME) methods for characterizing microbial communities. Soil Sci. Soc. Am. J. 64:1659-1668.   DOI
16 Antunes, P.M., P. Franken, D. Schwarz, M.C. Rillig, M. Cosme, M. Scott, and M.M. Hart. 2012. Linking soil biodiversity and human health; do arbuscular mycorrhizal fungi contribute to food nutrition? p. 153-172. In D. Wall, R.D. Bardgett, V. Behan-Pelletier, J.E. Herrick, T.H. Jones, K. Ritz et al. (ed.) Soil Ecology and Ecosystem Services. Oxford University Press, Oxford.
17 Baon, J.B., S.E. Smith, and A.M. Alston. 1993. Mycorrhizal responses of barley cultivars differing in P efficiency. Plant and Soil 157(1):97-105.   DOI
18 Beare, M.H., D.C. Coleman, D.A. Crossley Jr., P.F. hendrix, and E.P. Odum. 1995. A hierarchical approach to evaluating the significance of soil biodiversity to biogeochemical cycling. Plant and Soil 170:5-22.   DOI
19 Cameron, K.C., H.J. Di, and J.L. Moir. 2013. Nitrogen losses from the soil/plant system : a review. Ann. Appl. Biol. 162:145-173.   DOI
20 Cosentino, D., C. Chenu, and Y.L. Bissonnais. 2006. Aggregate stability and microbial community dynamics under dryingwetting cycles in a silt loam soil. Soil Biol. Biochem. 38:2053-2062.   DOI
21 Dias, T., A. Dukes, and P.M. Antunes. 2015. Accounting forsoil biotic effects on soil health and crop productivity in the design of crop ratations. J. Sci. Food Agric. 95:447-454.   DOI
22 Ellouze, W., A.E. Taheri, L.D. Bainard, C. Yang, N. Bazghaleh, A. Navarro-Borrell, K. Hanson, and C. Hamel. 2014. Soil fungal resources in annual cropping systems and their potential for management. BioMed Research International 2014, Article ID531824, 15pages.
23 Fontaine, S., S. Barot, P. Bare, N. Bdioui, B. Mary, and C. Rumpel. 2007. Stability of organic carbon in deep soil layers controlled by fresh carbon supply. Nature 450:277-280.   DOI
24 Vincent, J.M. 1970. A manual for the practical study of root nodule-bacteria. Blackwell Scientific Publication, Oxford.
25 Sun, B., Z.X. Dong, X.X. Zhang, Y. Li, H. Cao, and Z.L. Cui. 2011. Rice to vegetables: Short- versus long-term impact of land-use change on the indigenous soil microbial community. Microb. Ecol. 62:474-485.   DOI
26 USDA NRCS. 2011. Carbon to nitrogen ratios in cropping systems. http://www.nrcs.usda.gov/wps/PA_NRCSConsumption/download?cid=nrcs142p2_052823&ext=pdf. Assessed in June 2016.
27 van der Heijden, M.G.A., J.N. Klironomos, M. Ursic, P. Moutoglis, R. Streitwolf-Engel, T. Boller, A. Wiemken, and I.R. Sanders. 1998. Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity. Nature 396:69-72.   DOI
28 Wang, Q., Y. Li., and A. Alva. 2010. Cropping systems to improve carbon sequestration for mitigation of climate change. J. Environ. Protec. 1:207-215.   DOI
29 White, H. 1970. Fallowing, crop rotation and crop yields in Roman times. Agric Hist 44:281-290.
30 Zelles, L. 1999. Fatty acid patterns of phospholipids and lipopolysaccharides in the characterization of microbial communities in soil: a review. Biol. Fertil. Soils 29:111-129.   DOI
31 SAS. 2006. SAS enterprise guide Version 4.1. SAS Inst., Cary, NC.
32 Gupta, V.V.S.R. and J.J. Germida. 1988. Distribution of microbial biomass and its activity in different soil aggregate size classes as affected by cultivation. Soil Biol. Biochem. 20(6):777-786.   DOI
33 Frostegard, A., A. Tunlid, and E. Baath. 1993. Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Appl. Environ. Microbiol. 59(11):3605-3617.
34 Germida, J.J. and S.D. Siciliano. 2001. Taxonomic diversity of bacteria associated with the roots of modern, recent and ancient wheat cultivars. Biol. Fertil. Soils 33:410-415.   DOI
35 Grayston, S.J., S. Wang, C.D. Campbell, and A.C. Edwards. 1998. Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biol. Biochem. 30(3):369-378.   DOI
36 Hamel, C., K. Hanson, F. Selles, A.F. Cruz, R. Lemke, B. McConkey, and R. Zenrner. 2006. Seasonal and long-term resource-related variations in soil microbial communities in wheat-based rotations of the Canadian prairie. Soil Biol. Biochem. 38:2104-2116.   DOI
37 He, X.Y., Y.R. Su, Y.M. Liang, X.B. Chen, H.H. Zhu, and K.L. Wang. 2012. Land reclamation and short-term cultivation change soil microbial communities and bacterial metabolic profiles. J. Sci. Food Agric. 92(5):1103-1111.   DOI
38 Herrick, J.E. and M. Wander. 1997. Relationship between soil organic carbon and soil quality in cropped and rangeland soils;the importance of distribution, composition, and soil biological activity. p. 405-425. In R. Lal, J.M. Kimble, R.F. Follett, B.A. stewart (ed.) Soil Processes and the Carbon Cycle. CRC Press, Boca Raton.
39 Joa, J.H., D.G. Moon, S.W. Koh, and H.N. Hyun. 2012. Effect of temperature condition on nitrogen mineralization and soil microbial community shift in volcanic ash soil. Korean J. Soil Sci. Fert. 45(4):467-474.   DOI
40 Klinkenborg, V. 2012. Did farmers of the past knoe more than we do? New York Times: Sunday Review.
41 Konopka, A. and R. Turco. 1991. Biodegradation of organic compounds in vadose zone and aquifer sediments. Appl. Environ. Microbiol. 57:2260-2268.
42 Kulmatiski, A. and K.H. Beard. 2008. Decoupling plant-growth from land-use legacies in soil microbial communities. Soil Biol. Biochem. 40:1059-1068.   DOI
43 Lawrence, R. Zeph and L.E. Casida, Jr. 1986. Gram-negative versus gram-positive(Actinomycete) nonpbligte bacterial predators of bacteria in soil. Appl. Environ. Microbiol. 52:819-823.
44 Lee, G.S., J.C. Lee, U.G. Kang, C.Y. Park, and C.J. Kim. 2006. Fluctuation of rhizosphere microflora in paddy rice by long-term fertilization. J. Korean Soc. Appl. Biol. Chem. 49(3):175-179.
45 Lee, Y.H., B.K. Ahn, S.T. Lee, M.A. Shin, E.S. Kim W.D. Song, and Y.K. Sonn. 2011. Impacts of soil texture on microbial community from paddy soils in Gyeongnam province. Korean J. Soil Sci. Fert. 44(6):1176-1180.   DOI
46 Lee, Y.H. and S.K. Ha. 2011. Impacts of chemical properties on microbial population from upland soils in Gyeongnam province. Korean J. Soil Sci. Fert. 44(2):242-247.   DOI
47 Leteinturier, B., J.L. Herman; F. de Lonueville, L. Quintin, and R. Oger. 2006. Adaptation of a crop sequence indicator based on a land parcel management system. Agric. Ecosyst. Environ. 112:324-334.   DOI
48 Muthukumarasamy, R., U.G. Kang, K.D. Park, W.T. Jeon, C.Y. Park, Y.S. Cho, S.W. Kwon, J. Song, D.H. Roh, and G. Revathi. 2007. Enumeration, isolation and identification of diazotrophs from wetland rice varieties grown with long-term application of N and compost and their short-term inoculation effect on rice plants. J. Appl. Microbiol. 102:981-991.
49 Kang, U.G., H.M. Park, J.S.Lee, J.Y. Ko, Y.H. Lee, W.T. Jeon, M.T. Kim, and J.H. Joa. 2012. Dual inoculation response of soybean with rhizobium and mycorrhiza. Korean J. Soil Sci. Fert. 45(3):325-331.   DOI
50 Kang, U.G. 2007. Enhancement of soil productivity by soybean cultivation. Korea Soybean Digest 24(1):1-13.
51 Kang, U.G., K.D. Park, C.Y. Park, I.S. Son, and D.W. Lee. 2006. Development of the utilization model of plant growthpromoting rhizobacteria for low input of chemical fertilizer. p. 624-637. In year 2006 research report of Yeongnam Agricultural Research Institute, RDA, Suwon, Korea.