Microbial Diversity and Community Analysis in Lettuce or Cucumber Cultivated Greenhouse Soil in Korea
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Kim, Byung-Yong
(Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration)
Weon, Hang-Yeon (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) Park, In-Cheol (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) Lee, Sang-Yeob (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) Kim, Wan-Gyu (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) Song, Jae-Kyeong (Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration) |
1 | Aciego Pietri, J.C. and P.C. Brookes. 2008. Relationships between soil pH and microbial properties in a UK arable soil. Soil Biol. Biochem. 40:1856-1861. DOI ScienceOn |
2 | Baath, E. 1996. Adaptation of soil bacterial communities to prevailing pH in different soils. FEMS Microbiol. Ecol. 19:227-237. DOI |
3 | Bligh, E.G. and W.J. Dyer. 1959. A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol. 37:911-917. DOI |
4 | Bossio, D.A., K.M. Scow, N. Gunapala, and K.J. Graham. 1998. Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microb. Ecol. 36:1-12. DOI ScienceOn |
5 | Brant, J.B., E.W. Sulzman, and D.D. Myrold. 2006. Microbial community utilization of added carbon substrates in response to long-term carbon input manipulation. Soil Biol. Biochem. 38:2219-2232. DOI ScienceOn |
6 | Casida Jr, L.E. 1977. Microbial metabolic activity in soil as measured by dehydrogenase determinations. Appl. Environ. Microbiol. 34:630-636. |
7 | Cho, K.R., C.S. Kang, T.J. Won, and K.Y. Park. 2006. Effects of compressed expansion rice hull application and drip irrigation on the alleviation of salt accumulation in the plastic film house soil. Korean J. Soil Sci. Fert. 39: 372-379. |
8 | Fauci, M.F. and R.P. Dick. 1994. Soil microbial dynamics: short-and long-term effects of inorganic and organic nitrogen. Soil Sci. Soc. Am. J. 58:801-806. DOI ScienceOn |
9 | Fernandez-Calvino, D., J. Rousk, P.C. Brookes, and E. Baath. 2011. Bacterial pH-optima for growth track soil pH, but are higher than expected at low pH. Soil Biol. Biochem. 43:1569-1575. DOI ScienceOn |
10 | Fernandez‐Calvino, D. and E. Baath. 2006. Growth response of the bacterial community to pH in soils differing in pH. FEMS Microbiol. Ecol. 73:149-156. |
11 | Garbeva, P., J.A. Van Veen, and J.D. Van Elsas. 2003. Predominant Bacillus spp. in agricultural soil under different management regimes detected via PCR-DGGE. Microb. Ecol. 45:302-316. DOI ScienceOn |
12 | Hirsch, P.R., T.H. Mauchline, and I.M. Clark. 2010. Cultureindependent molecular techniques for soil microbial ecology. Soil Biol. Biochem. 42:878-887. DOI ScienceOn |
13 | Kwak, H.K., K.S. Seong, N.J. Lee, S.B. Lee, M.S. Han, and K.A. Roh. 2003. Changes in chemical properties and fauna of plastic film house soil by application of chemical fertilizer and composted pig manure. Korean J. Soil Sci. Fert. 36:304-310. |
14 | Lauber, C.L., M. Hamady, R. Knight, and N. Fierer. 2009. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl. Environ. Microbiol. 75:5111. DOI ScienceOn |
15 | Lee, Y.H. and S.K. Ha. 2011. Impacts of chemical properties on microbial population from upland soils in Gyeongnam province. Korean J. Soil Sci. Fert. 43:572-577. |
16 | McGill, W.B., K.R. Cannon, J.A. Robertson, and F.D. Cook. 1986. Dynamics of soil microbial biomass and water-soluble organic C in Breton L after 50 years of cropping to two rotations. Can. J. Soil Sci. 66:1-19. DOI |
17 | McSpadden Gardener, B.B. 2004. Ecology of Bacillus and Paenibacillus spp. in agricultural systems. Phytopathology 94:1252-1258. DOI |
18 | Nacke, H., A. Thurmer, A. Wollherr, C. Will, L. Hodac, N. Herold, et al. 2011. Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils. PLoS ONE 6:e17000. DOI ScienceOn |
19 | NIAST. 2000. Method of analysis of soil and plant. National Institute of Agricultural Science and Technology, Suwon, Korea. |
20 | Rousk, J., E. Baath, P.C. Brookes, C.L. Lauber, C. Lozupone, J.G. Caporaso, et al. 2010. Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 4:1340-1351. DOI ScienceOn |
21 | Song, J., H.Y. Weon, S.H. Yoon, D.S. Park, S.J. Go, and J.W. Suh. 2001. Phylogenetic diversity of thermophilic actinomycetes and Thermoactinomyces spp. isolated from mushroom composts in Korea based on 16S rRNA gene sequence analysis. FEMS Microbiol. Lett. 202:97-102. DOI ScienceOn |
22 | Suh, J.S., B.G. Jung, and J.S. Kwon. 1998. Soil microbial diversity of the plastic film house fields in Korea. Korean J. Soil Sci. Fert. 31:197-203. |
23 | Zelles, L., Q.Y. Bai, R. Rackwitz, D. Chadwick, and F. Beese. 1995. Determination of phospholipid-and lipopolysaccharidederived fatty acids as an estimate of microbial biomass and community structures in soils. Biol. Fertil. Soils 19:115-123. DOI ScienceOn |
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