Phylogenetic analysis of the genera Azorhizobium, Bradyrhizobium, Mesorhizobium, Rhizobum and Sinorhizobium on the basis of internally transcribed spacer region |
Kwon, Soon-Wo
(Genetic Resources Division, National Institute of Agricultural Biotechnology)
Kim, Chang-Yung (Genetic Resources Division, National Institute of Agricultural Biotechnology) Ryu, Jin-Chang (Molecular Physiology Division, National Institute of Agricultural Biotechnology) Go, Seung-Joo (Molecular Physiology Division, National Institute of Agricultural Biotechnology) |
1 | van Berkum, P. & Fuhrmann, J. J. (2000). Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence. Int J Syst Evol Microbiol 5O,2165-2172 |
2 | Fox, G. E., Wisotzkey, J. D. & Jurtshuk, P., Jr. (1992). How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42, 166-170 DOI ScienceOn |
3 | Jarvis, B. D. W., Downer, H. L. & Young, J. P. W. (1992). Phylogeny of fast-growing soybean-nodulating rhizobia supports synonymy of Sinorhizobium and Rhizobium and assignment to Rhizobium fredtti. Int J Syst Bacteriol 42, 93-96 DOI ScienceOn |
4 | Jarvis, B. D. W., Van Berkum, P., Chen, W. X, Nour, S. M., Fernandez, M. P., Cleyet-Marel, J. C. & Gillis, M. (1997). Transfer of Rhizobium loti, Rhizobium huakuii, Rhizobium ciceri, Rhizobium mediterraneum, and Rhizobium tlanshanense to Mesorhizobium gen. nov. Int J Syst Bacteriol 47,895-898 DOI ScienceOn |
5 | Nick, G., de Lajudie, P., Eardly, B. D., Suomalainen, S., Paulin, L., Zhang, X., Gillis, M. & Lindstrom, K. (1999). Sinorhizobium arboris sp. nov. and Sinorhizobium kostiense sp. nov., isolated from leguminous trees in Sudan and Kenya. Int J Syst Bacteriol 49, 1359-1368 DOI ScienceOn |
6 | Nour, S. M., Fernandez, M. P., Normand, P. & Cleyet-Marel, J. -C. (1994). Rhizobium ciceri sp. nov., consisting of strains that nodulate chickpeas (Cicer arietinum L.). Int J Syst Bacteriol 44, 511-522 DOI ScienceOn |
7 | Rome, S., Fernandes, M. P., Brunel, B., Normand, P. & Cleyet-Marel, J.-C. (1996). Sinorhizobium medicae sp. nov., isolated from annual Medicago spp. Int J Syst Bacteriol 46, 972-980 DOI ScienceOn |
8 | Tan. Z. U., Xu, X. D., Wang, E. T., Gao, J. L., Martinez-Romero, E. & Chen, W. X. (1997). Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related rhizobia. Int J Syst Bacteriol 47, 874-879 DOI ScienceOn |
9 | Sawada, H., leki, H., Oyalzu, H. & Matsumoto, S. (1993). Proposal for rejection of Agratxicterium turnefadens and revlsed descrtptions for the genus Agrobactertum and for Agrabactertum nadiobocter and Agrobactertum rhizqgenes. Int J Syst Bacteriol 43,694-702 DOI ScienceOn |
10 | Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassoclation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849 DOI ScienceOn |
11 | Yokota, A., Sakane, T., Ophel, K. & Sawada, H. (1993). Further studies on the cell fatty acid composition of Rhizobium and Agrobacterlium species. Inst Ferment Res Commun 16.86-94 |
12 | de Lajudie, P., Willems, A., Nlck, G. & 9 other authors. (1998b). Characterization of tropical tree rhizobia and description of Mesorhizobium plurifarium sp. nov. Int J Syst Bacteriol48,369-382 |
13 | Jarvis, B. D. W., Gillis, M. & De Ley, J. (1986). Intra- and intergeeneric similarities between the ribosomal ribonucleic acid cistrons of Rhizobium and Bradyrhizobium species and some related bacteria, Int J Syst Bacteriol 36, 129-138 DOI |
14 | de Lajudie, P., Willems, A., Pot, B. & 7 other authors. (1994). Polyphasic taxonomy of rhizobia: emendation of the genus Sinorhizoblum and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., Sinorhizobium teranga sp. nov. Int J Syst Bacteriol 44, 715- 733 DOI ScienceOn |
15 | Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849 DOI ScienceOn |
16 | Maldak, B. L., Larsen, N., McCaughey, M. J., Overbeek, R., Olsen, G. J., Fogel, K., Blandy, J. & Woese, C. R. (1994). The rhibosomal database project. Nucleic Acids Res 22. 3485-3487 DOI ScienceOn |
17 | Vincent, J. M. (1970). A manual for the practical study of root-nodule bacteria, p. 73-97. In International biological programme handbook. Blackwell Scientific Publications, Ltd., Oxford |
18 | Willems, A & Collins, M. D. (1993). Phylogenetic analysis of rhizobia and agrobacteria based on 16S rRNA gene sequences. Int J Syst Bacteriol 43, 301-313 |
19 | Nakagawa, T., Shimada, M., Mukai, H., Asada, K., Kato, I., Fujino, K. & Sato, T. (1994). Detection of alcohol-tolerant Hiochi bacteria by PCR. Appl Environ Microbiol 60, 637-640 |
20 | Laguerre, G., Fernandez, M. P., Edel, V., Nonnand, P. & Amarger, N. (1993). Genomic heterogeneity among French Rhizobium strains isolated from Phaseolus vulgaris L. Int J Syst Bacteriol 43, 761-767 DOI ScienceOn |
21 | Kerr, A. (1969). Transfer of virulence between isolates of Agrobacterium. Nature(London)223,1175-1176 DOI |
22 | Chen, W. X., Tan, Z. Y., Gao, J. L., Li, Y., & Wang, E. T. (1997). Rhizobium hainanse sp. nov. isolated from tropical legumes. Jnt J Syst Bacteriol 47, 870-873 DOI ScienceOn |
23 | de Lajudie, P., Laurent-Fulele, E., Willems, A., Torck, U., Coopman, R., Collins, M. D., Kersters, K., Dreyfus, B. & Gillis, M. (1998a). Allorhizobium undicola gen. nov., sp. nov., nitrogen-fixing bacteria that efficiently nodulate Neptunia natans in Senegal. Jnt J Syst Bacteriol 48, 1277-1290 DOI ScienceOn |
24 | Jordan. D. C. (1984). Family III Rhizobiaceae. Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 234-244. Edited by N. R. Krieg & J. G. Holt. Baltimore: William & Wilkins |
25 | Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism. Academic Press, NewYork. N. Y |
26 | Lamb, J. W., Hombrecher, G. & Johnston, A. W. B. (1982). Plasmid-determined nodulation and nitrogen fixation abilities in Rhizobium phaseoli. Mol Gen Genet 186, 449-452 DOI |
27 | Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y |
28 | van Berkum, P., Beyene, D., Bao, G., Campbell, T. A. & Eardly, B. D. (1998). Rhizobium mongolense sp. nov. is one of three rhizobial genotypes identified which nodulate and form nitrogen-fixing symbioses with Medicago ruthenica[(L.)Ledebour].Int J Syst Bacteriol 48, 13-22 DOI ScienceOn |
29 | Amarger, N., Macheret, V. & Laguerre, G. (1997). Rhizobturn gallicum sp. nov. and Rhizobium giardinitti sp. nov., from Phaseolus vulgaris nodules. Int J Syst Bacteriol 47, 996-1006 DOI ScienceOn |
30 | Dorado, 0., Chen, W. X. & Martinez-Romero, E. (1998). Rhizobium huautlense sp. nov., a symbiont of Sesbania herbacea that has a close phylogenetic relationship with Rhizoblum galegae.Int J Syst Bacteriol 48, 687-699 DOI ScienceOn |
31 | Saitou, N. and Nel, M. (1987). The neighbor-Joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425 |
32 | Sawada, H., leki, H., Oyaizu, H. & Matsumoto, S. (1993). Proposal for rejection of Agrobacterium turnefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium radiobacter and Agrobacterium rhizogenes. Int J Syst Bacteriol 43, 694-702 DOI ScienceOn |
33 | Chen. W. X., Yan, G. H. & Li, J. L. (1988). Numerical taxonomic study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Stnorhizobtum gen. nov. Int J Syst Bacteriol 38, 392-397 DOI |
34 | Johnston, A. W. B., Beynon, J. L., Buchanan-Wollaston, A. V., Setchel, S. M., Hirsh, P. R. & Beringer, J. E. (1978). High frequency transfer of nodulation ability between strains and species of Rhizobium. Nature (London) 276, 634-636 DOI PUBMED ScienceOn |
35 | Hooykaas, P. J. J., van Brussel, A. A. N., den Dulk-Ras, H., van Slotgeren, G. M. S. & Schilperoort, R. A. (1981). Symplasmid of Rhizobium trifolii expressed in different rhizobial species and in Agrobacterium tumefaciens. Nature(London)291,351-353 DOI |
36 | Pulawska, J., Maes, M., Willems, A. & Sobiczewski, P. (2000). Phylogenetic analysis of 23S rRNA gene sequences of Agrobacterium, Rhizobium and Sinorhizobium strains. Syst Appl Microbiol 23, 238-244 DOI |
37 | Terefework, Z., Nick, G., Suomalainen, S., Paulin, L. & Lindstrom, K. (1998). Phylogeny of Rhizobium galegae with respect to other rhizobia and agrobacteria. Int J Syst Bacteriol 48, 349-356 DOI |
38 | Yanagi. M. and Yamasato, K. (1993). Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiol Lett 107, 115-120 DOI ScienceOn |
39 | Rome, S., Brunel, B., Fernandez, M. P., Normand, P. & Cleyet-Marel, J. C. (1996). Evidence of two genomic species of Rhizobium associated with Medicago truncatula revealed by PCR/RFLP and DNA/DNA hybridizations. Ach Microbiol 165, 285-288 DOI ScienceOn |
40 | Maynard Smith, J. (1995). Do bacteria population genetics? In Population Genetics of Bacteria, pp. 1-12. Edited by S. Baumberg, J. P. W. Young, E. M. H. Wellington & J.R. Saunders. Cambridge: Cambridge University Press |
41 | Dreyfus, B., Garcla, J. L. & Gillis, M. (1988), Characterization of Azorhizobium caulinodans gen. nov., sp. nov., a stem-nodulating nitrogen-fixing bacterium isolated from Sesbania rostrata. Int J Syst Bacteriol 38, 89-98 DOI |
42 | Kumar, S., Tamura, K. & Nel, M. (1993). MEGA: molecular evolutionary genetics analysis, version 1.0. The Pennsylvania State University, University Park |
43 | Larebeke, N. V., Genetello, C., Schell, J., Schiperoort R. A., Hermans, A. K., Hernalsteens, J. P. & Montagu, M. V. (1975). Acquisition of tumor-inducing ability by non-oncogenic agrobacteria as a result of plasmid transfer. Nature(London)255,742-743 DOI ScienceOn |
44 | Young, J. M., Kuykendall, L. D., Martinez-Romero, E., Kerr, A. & Sawada, H. (2001). A revision of Rhizobium Frank 1889, wlth an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizcbium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vittis. Int J Syst Euol Mlcrobiol 51, 89- 103 |
45 | Wang, E. T., van Berkum, P., Sui, X. H., Beyene, D., Chen, W. X. & Martinez-Romero, E. (1999). Diversity of rhizobia associated with Amorpha fruticosa isolated from Chinese soils and description of Mesorhizobium amorphae sp. nov. Int J Syst Bacteriol 49, 51-65 DOI ScienceOn |