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http://dx.doi.org/10.5141/JEFB.2006.29.4.399

Bacterial Diversity in the Rhizosphere of Halophyte Suaeda japonica in Western and Southern Mudflats of Korea  

Park, Suhk-Hwan (Department of Biology, Kunsan National University)
Lee, Geon-Hyoung (Department of Biology, Kunsan National University)
Publication Information
Journal of Ecology and Environment / v.29, no.4, 2006 , pp. 399-404 More about this Journal
Abstract
This study was carried out to investigate the population densities, R/S ratios, and identification of heterotrophic bacteria on the rhizosphere soil of halophyte Suaeda japonica found on the western and southern mudflats of Korea. The population densities of aerobic and anaerobic heterotrophic bacteria on the rhizosphere soil of Suaeda japonica were in the range of $1.3\;{\pm}\;0.3\;{\times}\;10^6\;{\sim}\;6.3\;{\pm}\;3.3\;{\times}\;10^7\;and\;2.8\;{\pm}\;1.3\;{\times}\;10^4\;{\sim}\;1.8\;{\pm}\;0.7\;{\times}\;10^7\;cfu\;g^{-1}\;d.\;wt.$, respectively. In case of physiologically specific bacteria, population densities of amylolytic bacteria on the rhizosphere soil of Suaeda japonica were in the range of $4.4\;{\pm}\;0.6\;{\times}\;10^6\;{\sim}\;2.5\;{\pm}\;1.2\;{\times}\;10^7\;cfu\;g^{-1}\;d.\;wt.$, those of cellulolytic bacteria were from $8.5\;{\pm}\;6.0\;{\times}\;10^4\;{\sim}\;2.3\;{\pm}\;1.6\;{\times}\;10^6\;cfu\;g^{-1}\;d.\;wt.$, and those of proteolytic bacteria were from $3.8\;{\pm}\;1.8\;{\times}\;10^5\;{\sim}\;4.2\;{\pm}\;2.9\;{\times}\;10^6\;cfu\;g^{-1}\;d.\;wt.$, respectively. The R/S ratios were ranged from 2.33 to 2.39. Among eleven isolates from the roots of halophyte Suaeda japonica of Goheung bay by using 16S rDNA analysis, five clones were closely related to ${\gamma}-Proteobacteria$ group and six clones were closely related to ${\alpha}-Proteobacteria$ group. Among four isolates from Suncheon bay, two strains were related to ${\gamma}-Proteobacteria$ group and another two were related to Actinobacteria and Bacilli group, respectively.
Keywords
Halophyte; Population density; Rhizosphere; R/S ratio; Suaeda japonica; 16S rDNA;
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1 Assigbetse K, Gueye M, Thioulouse J, Duponnois R. 2005. Soil bacterial diversity response to root colonization by an ectomycorrhizal fungus are not root-growth-dependent. Microb Eco 50: 350- 359   DOI
2 Gomes NCM, Heuer H, Schonfeld J, Costa R, Mendonca-Hagler L, Smalla K. 2001. Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. Plant Soil 232: 167-180   DOI   ScienceOn
3 Gray TRG, Parkinson D, eds. 1968. The ecology of soil bacteria 681. University of Toronto Press, Toronto, Canada
4 Grayston SJ, Vaughan D, Johnes D. 1996. Rhizosphere carbon flow in tree, in comparison with annual plants: the importance of root exudation and its impact on microbial activity and nutrient availability. Appl Soil Ecol 5: 29-56   DOI   ScienceOn
5 Harley JL, Russell RS. 1968. The soil-root interface. Academic Press, London
6 Holding AJ, Collee JG. 1971. Routine biochemical tests. In: Methods in Microbiology (Norris JR, Ribbons DW, eds) Vol 6A. Academic Press Inc Ltd, London and New York, pp 1-32
7 Ibekwe AM, Kennedy AC. 1998. Fatty acid methyl ester (FAME) profiles as a tool to investigate community structure of two agricultural soils. Plant Soil 206: 151-161   DOI
8 Katznelson H. 1946. The 'Rhizosphere effect' of mangles on certain groups of soil microorganisms. Soil Sci 62: 343-354   DOI
9 Nye PH, Tinker PB. 1977. Solute movement in the soil-root system. Blackwell Scientific Publications, Oxford, England
10 Paul EA, Clark FE. 1988. Soil microbiology and biochemistry. Academic Press, San Diego
11 Rovira AD. 1991. Rhizosphere research - 85 years of progress and frustration. In: Phizosphere and Plant Growth (Keister DI, Cregan PB, eds). Kluwer Academic Publishers, Netherlands, pp 3-13
12 Singh G, Mukerji KG. 2006. Root exudates as determinant of rhizospheric microbial biodiversity. In: Microbial Activity in the Rhizosphere (Mukerji KG, Manoharachary C, Singh J, eds). Springer-Verlag, Berlin, Heidelberg, pp 39-53
13 Timonin MI. 1966. Rhizosphere effect of healthy and diseased lodgepole pine seedlings. Can J Microbiol 12: 531-537   DOI
14 von der Weid I, Paiva E, Nobrega A, van Elsas JD, Seldin L. 2000. Diversity of Paenibacillus polymyxa strains isolated from the rhizosphere of maize planted in Cerrado soil. Res Microbiol 151: 369-381   DOI   ScienceOn
15 Atlas RM, Bartha R. 1992. Microbial ecology: Fundamentals and application. Benjamin/Cummings Publishing Co. pp 69-74
16 Choi GK, Lee GH. 1996. Interaction between saprophytic bacterial distribution and their extracellular enzyme activities in the sediment of the Yellow sea near Seocheon. The Microorganisms and Industry 22: 119-126
17 Curl EA, Truelove B. 1986. The rhizosphere. Springer, Berlin, Heidelberg, New York
18 Wellington EMH, Berry A, Krsek M. 2003. Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing. Curr Opin Microbiol 6: 295-301   DOI   ScienceOn
19 Gelsomino A, Keijzer-Wolters AC, Cacco G, Van Elsas JD. 1999. Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. J Microbiol Methods 38: 1-15   DOI   ScienceOn
20 Giddens JE and Todd RL. 1984. Rhizosphere microorganisms-overview. In: Microbial-plant interaction (Todd RL, Giddens JE, eds). Proc Soil Sci Soc Am, Medison, pp 51-68
21 Kim BS, Oh H-M, Kang H, Chun J. 2005. Archaeal diversity in the tidal flat sediment as revealed by 16S rDNA analysis. J Microbiol 43: 144-151   과학기술학회마을
22 Miethling R, Wieland G, Backhaus H, Tebbe CC. 2000. Variation of microbial rhizosphere communities in response to crop species, soil origin and inoculation with Sinorhizobium meliloti L. 33. Microb Eco 40: 43-56   DOI   ScienceOn
23 Marshner P, Yang CH, Lieberei R, Crowley DE. 2001. Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biol Biochem 33: 1437-1445   DOI   ScienceOn
24 Kim BS, Oh H-M, Kang H, Pack SS, Chun J. 2004. Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis. J Microbiol Biotechnol 14: 205-211
25 Kim SJ, Lee GH. 1992. Distribution of heterotrophic bacteria and extracellular enzyme activities in the sediment of South Sea, Korea. Kor J Microbiol 30: 383-390
26 Lee GH, Choi GG, Back CB. 1996. Distribution of aerobic/anaerobic saprophytic bacteria in the sediments of the Yellow Sea near Kunsan, Korea. Arch Hydrobiol Spec Issues Advanc Limnol 48: 227- 232
27 Woldendorp JW. 1978. The rhizoshere as part of the plant-soil system. In: Structure and functioning of plant population. Verhandeligen der Koninklijke, Nederlandse Akademie van Wetsenschappen, Afdeling Natuukunde, Twede Reeks, deel 70
28 Lee MS, Hong SG, Lee DH, Kim CK, Bae KS. 2001. Bacterial diversity in the mud flat of Suncheon bay, Chun-nam Province, by 16SrRNA gene analysis. Kor J Microbiol 37: 137-144
29 Lee YK, Kim HW, Liu CL, Lee HK. 2003. A simple method for DNA extraction from marine bacteria that produce extracellular materials. J Microbiol Methods 52: 245-250   DOI   ScienceOn
30 Lynch JM. 1982. The rhizosphere. In: Exp Microb Eco (Burns RG, Slater JH, eds), Blackwell, Oxford, England. pp 395-411
31 Wollum AG. 1982. Cultural methods for soil microorganisms. In: Method of Soil Analysis, Part 2: Chemical and Microbiological Properties, 2nd, American Society of Agronomy, Inc., Soil Science Society of America, Inc. ed, Madison, Wisconsin. pp 781-802
32 Gray JP, Herwing RP. 1996. Phylogenetic analysis of the bacterial communities in marine sediments. Appl Environ Microbiol 62: 4049-4059
33 Russell RS. 1977. Plant root systems: Their function and interaction with the soil. McGraw-Hill, London
34 Park SH. 2004. Taxonomical study of heterotrophic bacteria in the rhizosphere of halophytes in western and southern coastal area of Korea. 35. BS thesis. Graduate School, Kunsan National University, Korea
35 Degens BP, Schipper LA, Sparling GP, Vojvodic-Vukovic M. 2000 Decreases in organic C reserves in soils can reduce the catabolic diversity of soil microbial communities. Soil Biol Biochem 32: 189-196   DOI   ScienceOn
36 Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstruction phylogenetic trees. Mol Biol Evol 4: 406-425
37 Johnson LF, Curl EA, Bond JH, Fribourg HA. 1959. Microorganisms in the plant rhizoshere. In: Methods for Studying Soil Microflora - Plant Disease Relationships (Johnson LF and Curl EA eds), Burgess Pulb Minn. pp 29-37