REP-PCR Genotyping of Four Major Gram-negative Foodborne Bacterial Pathogens
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Jung, Hye-Jin
(Department of Food Science and Technology, Chung-Ang University)
Seo, Hyeon-A (Department of Food Science and Technology, Chung-Ang University) Kim, Young-Joon (Department of Food Science and Technology, Chung-Ang University) Cho, Joon-Il (Department of Food Science and Technology, Chung-Ang University) Kim, Keun-Sung (Department of Food Science and Technology, Chung-Ang University) |
1 | Hulton CSJ, Higgins CF, Sharp PM. ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5: 825-834 (1991) DOI ScienceOn |
2 | Rajashekara G. Haverly E, Halvorson DA, Ferris KE, Lauer DC, Nagaraja KY. Multidrug-resistant Salmonella typhimurium DT104 in poultry. J. Food Prot. 63: 155-161 (2000) DOI PUBMED |
3 | Clark CG, Kravetz AN, Dendy C, Wang G, Tyler KD, Johnson WM. Investigation of the 1994-5 Ukrainian Vibrio cholerae epidemic using molecular methods. Epidemiol. Infect. 121: 15-29 (1998) DOI ScienceOn |
4 | Olive DM, Bean P. Principle and application of methods for DNA-based typing of microbial organisms. J. Clin. Microbiol. 37: 1661-1669 (1999) PUBMED |
5 | Li WH, Simple method for constructing phylogenetic trees from distance matrices. Proc. Natl. Acad. Sci. USA 78: 1085-1089 (1981) DOI ScienceOn |
6 | Sander A, Ruess M, Bereswill S, Schuppler M, Steinbrueckner B. Comparision of different DNA fingerprinting technique for molecular typing of Bartonella henselae isolates. J. Clin. Microbiol, 36: 1973-2981 (1998) |
7 | Louws FJ, Fulbright DW, Stephens CT, de Bruijn FJ. Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR. Appl. Environ. Microbiol. 60: 2286-2295 (1994) PUBMED |
8 | Versalovic J, Schneider M, de Bruijn FJ, Lupski JR. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell. BioI. 5: 25-40 (1994) |
9 | Wong HC, Lin CH. Evaluation of typing of Vibrio parahaemolyticus by three PCR methods using specific primers. J. Clin. Microbiol. 39: 4233-4240 (2001) DOI ScienceOn |
10 | Navia MM, Capitano L, Ruiz J, Vargas M, Urassa H, Schellemberg D, Gascon J, Vila J. Typing and characterization of mechanisms of resistance of Shigella spp. isolated from feces of children under 5 years of age from lfakara, Tanzania. J. Clin. Microbiol. 37: 3113-3117 (1999) PUBMED |
11 | Higgins CF, Ames GFL, Barnes WM, Clement JM, Hofnung M. A novel intercistronic regulatory element of prokaryotic operons. Nature 298: 760-762 (1982) DOI ScienceOn |
12 | Lupski JR, Weinstock GM. Short, interspersed repetitive DNA sequences in prokaryotic genomes. J. Bacteriol. 174: 4525-4529 (1992) DOI PUBMED |
13 | Loubinoux J, Lozniewski A, Lion C, Garin D, Weber M, Le Faou AE. Value of enterobacterial repetitive intergenic consensus PCR for study of Pasteurella multocida strains isolated from mouths of dogs. J. Clin. Microbiol. 37: 2488-2492 (1999) PUBMED |
14 | Olsen JE, Aabo S, Hill W, Notermars K, Granum PE, Popovic T, Rasmussen HN, Olsvik O. Probes and polymerase chain reaction for detection of food-borne bacterial pathogens. Int. J. Food Microbiol. 28: 1-78 (1995) DOI ScienceOn |
15 | Martin B, Humbert O, Camara M, Guenzi E, Walker J, Mitchell T, Andrew P, Prudhomme M, Alloing G, Hakenbeck R, Morrison DA, Boulnois GJ, Claverys JP. A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae. Nucleic Acids Res. 20: 3479-3483 (1992) DOI ScienceOn |
16 | Dalla-Costa LM, Irino K, Rodrigues J, Rivera ING, Trabulsi LR. Characterisation of diarrhoeagenic Escherichia coli clones by ribotyping and ERIC-PCR. J. Med. Microbiol. 47: 227-234 (1998) DOI ScienceOn |
17 | McLellan SL, Daniels AD, Salmore AK. Genetic characterization of Escherichia coli populations from host sources of fecal pollution by using DNA fingerprinting. Appl. Environ. Microbiol. 69: 2587-2594 (2003) DOI ScienceOn |
18 | Liu PYF, Lau YJ, Hu BS, Shyr JM, Shi ZY, Tsai WS, Lin YH, Tseng CY. Analysis of clonal relationships among isolates of Shigella sonnei by different molecular typing methods. J. Clin. Microbiol. 33: 1779-1783 (1995) PUBMED |
19 | Dombek PE, Johnson LK, Zimmerley ST, Sadowsky MJ. Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources. Appl. Environ. Microbiol. 66: 2572-2577 (2000) DOI ScienceOn |
20 | Del Vecchio VG, Petroziello JM, Gress MJ, McCleskey FK, Melcher GP, Crouch HK, Lupski JR. Molecular genotyping of methicillin-resistant Staphylococcus aureus via fluorophoreenhanced repetitive-sequence PCR. J. Clin. Microbiol. 33: 21412144 (1995) |
21 | Johnson JR, O'Bryan TT. Improved repetitive-element PCR fingerprinting for resolving pathogenic and nonpathogenic phylogenetic groups within Escherichia coli. Clin. Diag. Lab. Immun. 7: 265-273 (2000) |
22 | de Bruijn FJ. Use of repetitive (repetitive extragenic element and enterobacterial repetitive intergenic consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58: 2180-2187 (1992) PUBMED |
23 | Hahm BK, Maldonado Y, Schreiber E, Bhunia AK, Nakatsu CH. Subtyping of foodborne and environmental isolates of Escherichia coli by multiplex-PCR, rep-PCR, PFGE, ribotyping and AFLP. J. Microbiol. Methods. 53: 387-399 (2003) DOI ScienceOn |
24 | Versalovic J, Koeuth T, Lupski JR. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19: 6823-6831 (1991) DOI ScienceOn |
25 | Johnson JR, Clabots C. Improved repetitive-element PCR fingerprinting of Salmonella enterica with the usc of extremely elevated annealing temperatures. Clin. Diag. Lab. Immun. 7: 258-264 (2000) |
26 | Rivera IG, Chowdhury MAR, Huq A, Jacobs D, Martins MT, Colwell R. Enterobacterial repetitive intergenic consensus sequences and the PCR to generate fingerprints of genomic DNAs from Vibrio cholerae O1, O139, and non-O1 strains. Appl. Environ. Microbiol. 61: 2898-2904 (1995) PUBMED |
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