Proteome analysis of storage roots of two sweet potato cultivars with contrasting low temperature tolerance during storage |
Kim, Yun-Hee
(Department of Biology Education, College of Education, IALS, Gyeongsang National University)
Ji, Chang Yoon (Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology) Kim, Ho Soo (Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology) Chung, Jung-Sung (Department of Agronomy, College of Agriculture and Life Sciences, Gyeongsang National University, IALS) Choi, Sung Hwan (Division of Horticulture Science, College of Agriculture and Life Sciences, Gyeongsang National University, IALS) Kwak, Sang-Soo (Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology) Lee, Jeung Joo (Department of Plant Medicine, College of Agriculture and Life Sciences, IALS, Gyeongsang National University) |
1 | Lee JJ, Park KW, Kwak YS, Ahn JY, Jung YH, Lee BH, Jeng JC, Lee HS, Kwak SS (2012) Comparative proteomic study between tuberous roots of light orange- and purple-fleshed sweetpotato cultivars. Plant Sci. 19:120-129 |
2 | Manaa A, Faurobert M, Valot V, Bouchet JP, Grasselly D, Causse M, Ahmed HB (2013) Effect of salinity and calcium on tomato fruit proteome. OMICS 17:338-352 DOI |
3 | Minamikawa T, Akazawa T, Uritani I (1961) Mechanism of cold injury in sweet potatoes II. Biochemical mechanism of cold injury with special reference to mitochondrial activities. Plant Cell Physiol 2:301-309 DOI |
4 | Odanaka S, Bennett AB, Kanayama Y (2002) Distinct physiological roles of fructokinase isozymes revealed by gene-specific suppression of Frk1 and Frk2 expression in tomato. Plant Physiol. 129:1119-1126 DOI |
5 | Renz A, Stitt M (1993) Substrate specificity and product inhibition of different forms of fructokinases and hexokinases in developing potato tubers. Planta 190:166-175 DOI |
6 | Wu Z, Cheng J, Qin C, Hu Z, Yin C, Hu K (2013) Differential proteomic analysis of anthers between cytoplasmic male sterile and maintainer lines in Capsicum annuum L. Int J Mol Sci 14:22982-22996 DOI |
7 | Xie Z, Zhou Z, Li H, Yu J, Jiang J, Tang Z, Ma D, Zhang B, Han Y, Li Z (2019) High throughput sequencing identifies chilling responsive genes in sweetpotato (Ipomoea batatas Lam.) during storage. Genomics 111:1006-1017 DOI |
8 | Andrade Jde M, Toledo TT, Nogueira SB, Cordenunsi BR, Lajolo FM, do Nascimento JR (2012) 2D-DIGE analysis of mango (Mangifera indica L.) fruit reveals major proteomic changes associated with ripening. J Proteomics 75:3331-3341 DOI |
9 | Bradford MM (1976) A rapid sensitive methods for the quantization of microgram quantities of protein utilizing the principles of protein-dye binding. Anal Biochem 72:248-255 DOI |
10 | Chen S, Harmon AC (2006) Advances in plant proteomics. Proteomics 6:5504-5516 DOI |
11 | Eckert R, Randall D, Burggren WW, French K (2002) Eckert animal physiology: mechanisms and adaptations. New York: W.H. Freeman and CO. |
12 | Grummt I (2006) Actin and myosin as transcription factors. Curr Opin Gene Dev 16:191-196 DOI |
13 | Hattori T, Yoshida N, Nakamura K (1989) Structural relationship among the members of multigene family coding for the sweetpotato tuberous roots storage proteins. Plant Mol Biol 13:563-572 DOI |
14 | Yeh KW, Chen JC, Lin MI, Chen YM, Lin CY (1997) Functional activity of sporamin from sweetpotato (Ipomoea batatas Lam.): a tuber storage protein with trypsin inhibitory activity. Plant Mol Biol 33:565-570 DOI |
15 | Ji CY, Jin R, Xu Z, Kim HS, Lee CJ, Kang L, Kim SE, Lee HU, Lee JS, Kang CH, Chi YH, Lee SY, Xie Y, Li H, Ma D, Kwak SS (2017b) Overexpression of Arabidopsis P3B increases heat and low temperature stress tolerance in transgenic sweetpotato. BMC Plant Biol 17:139 DOI |
16 | Ji CY, Kim HS, Lee CJ, Kim SE, Lee HU, Nam SS, Lie Q, Mae D, Kwak SS (2020) Comparative transcriptome profiling of tuberous roots of two sweetpotato lines with contrasting low temperature tolerance during storage. Gene 727:144244 DOI |
17 | Kwak SS (2019) Biotechnology of the sweetpotato: ensuring global food and nutrition security in the face of climate change. Plant Cell Rep 38:1361-1363 DOI |
18 | Zeng Y, Pan Z, Ding Y, Zhu A, Cao H, Xu Q, Deng X (2011) A proteomic analysis of the chromoplasts isolated from sweet orange fruits [Citrus sinensis (L.) Osbeck]. J Exp Bot 62:5297-5309 DOI |
19 | Maeshima M, Sasaki T, Asahi T (1985) Characterization of major proteins in sweet potato tuberous roots. Phytochemistry 24:1899-1902 DOI |
20 | Lieberman M, Craft CC, Audia W, Wilcox M (1958) Biochemical studies of chilling injury in sweetpotatoes. Plant Physiol 33:307-311 DOI |
21 | German MA, Dai N, Matsevitz T, Hanael R, Petreikov M, Bernstein N, Ioffe M, Shahak Y, Schaffer AA, Granot D (2003) Suppression of fructokinase encoded by LeFRK2 in tomato stem inhibits growth and causes wilting of young leaves. Plant J 34:837-846 DOI |
22 | Lee JJ, Kim YH, Kwak YS, An JY, Kim PJ, Lee BH, Kumar V, Park K, Chang ES, Jeong JC, Lee HS, Kwak SS (2015) A comparative study of proteomic differences between pencil and storage roots of sweetpotato (Ipomoea batatas (L.) Lam.) Plant Physiol Biochem 87:92-101 DOI |
23 | Bovell-Benjamin AC (2007) Sweetpotato: a review of its past, present, and future role in human nutrition. Adv Food Nutr Res 52:1-59 DOI |
24 | Damari-Weissler H, Rachamilevitch S, Aloni R, German MA, Cohen S, Zwieniecki MA, Holbrook NM, Granot D (2009) LeFRK2 is required for phloem and xylem differentiation and the transport of both sugar and water. Planta 230:795-805 DOI |
25 | Dennis D, Blakeley S (2000) Carbohydrate metabolism. Biochem Mol Biol Plant 2000:630-675 |
26 | Edmunds B, Boyette M, Clark C, Ferrin D, Smith T, Holmes G (2008) Postharvest handling of sweetpotato. North Carolina Coop Ext Serv. |
27 | Hurkman WJ, Tanaka CK (1986) Solubilization of plant membrane proteins for analysis by to-dimensional gel electrophoresis. Plant Physiol 81:802-806 DOI |
28 | Gunning PW, Ghoshdastider U, Whitaker S, Popp D, Robinson RC (2015) The evolution of compositionally and functionally distinct actin filaments. J Cell Sci 128:2009-2019 DOI |
29 | Ha J, Won JC, Jung YH, Yang JW, Lee HU, Nam KJ, Park SC, Jeong JC, Lee SW, Lee DW, Chung JS, Lee JJ, Kim YH (2017) Comparative proteomic analysis of the response of fibrous roots of nematode-resistant and -sensitive sweet potato cultivars to root-knot nematode Meloidogyne incognita. Acta Physiol Plant 39:262 DOI |
30 | Higaki T, Sano T, Hasezawa S (2007) Actin microfilament dynamics and actin side-binding proteins in plants. Curr Opin Plant Biol 10:549-556 DOI |
31 | Lodish HF, Berk A, Kaiser C, Krieger M, Bretscher A, Ploegh H, amon A, Martin KC (2016) Cell Organization and Movement I: Microfilaments. Molecular Cell Biology (Eighth ed.). New York: W.H. Freeman |
32 | Wollfe JA (1992) Sweet Potato: an Untapped Food Resource. Cambridge University Press |
33 | Ji CY, Chung WH, Kim HS, Jung WY, Kang L, Jeong JC, Kwak SS (2017a) Transcriptome profiling of sweetpotato tuberous roots during low temperature storage. Plant Physiol Biochem 112:97-108 DOI |
34 | Kim ST, Kim SG, Hwang DH, Kang SY, Kim HJ, Lee BH, Lee JJ, Kang KY (2004) Proteomic analysis of pathogen-responsive proteins from rice leaves induced by rice blast fungus, Magnaporthe grisea. Proteomics 4:3569-3578. DOI |
35 | Sevillano L, Sanchez-Ballesta MT, Romojaro F, Flores FB (2009) Physiological, hormonal and molecular mechanisms regulating chilling injury in horticultural species. Postharvest technologies applied to reduce its impact. Sci Food Agri 89: 555-573 DOI |
36 | Matsui NM, Smith-Beckerman DM, Epstein LB (1999) Staining of preparative 2-D (2-D proteome analysis protocols). Methods Mol Biol 112:370-311 |
37 | Palma MJ, Corpas FJ, del Rio LA (2011) Proteomics as an approach to the understanding of the molecular physiology of fruit development and ripening. J Proteomic 74:1230-1243 DOI |
38 | Yamaki S, Uritani I (1972) Mechanism of chilling injury in sweet potato VII. Changes in mitochondrial structure during chilling storage. Plant Cell Physiol 13:795-805 DOI |