Tracing the footprints of the ABCDE model of flowering in Phalaenopsis equestris (Schauer) Rchb.f. (Orchidaceae) |
Himani, Himani
(Department of Botany, Panjab University)
Ramkumar, Thakku R. (Department of Botany, Panjab University) Tyagi, Shivi (Department of Botany, Panjab University) Sharma, Himanshu (Department of Botany, Panjab University) Upadhyay, Santosh K. (Department of Botany, Panjab University) Sembi, Jaspreet K. (Department of Botany, Panjab University) |
1 | Folter S de, Immink RGH, Kieffer M, et al. (2005) Comprehensive Interaction Map of the Arabidopsis MADS Box Transcription Factors. Plant Cell Online 17:1424-1433 DOI |
2 | Fornara F, Parenicova L, Falasca G, et al. (2004) Functional Characterization of OsMADS18, a Member of the AP1/SQUA Subfamily of MADS Box Genes. Plant Physiol 135:2207-2219 DOI |
3 | Gan Y, Filleur S, Rahman A, Gotensparre S, Forde BG (2005) Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana. Planta 222:730-742 DOI |
4 | Henschel K, Kofuji R, Hasebe M, Saedler H, Munster T, Theissen G (2002) Two ancient classes of MIKC-type MADS-box genes are present in the moss Physcomitrella patens. Mol. Biol. Evol. 19:801-14 DOI |
5 | Hepworth SR, Valverde F, Ravenscroft D, Mouradov A, Coupland G (2002) Antagonistic regulation of flowering-time gene SOC1 by CONSTANS and FLC via separate promoter motifs. The EMBO J. 21:4327-37 DOI |
6 | Hsu HF, Hsieh WP, Chen MK, Chang YY, Yang CH (2010) C/D Class MADS Box Genes from Two Monocots, Orchid (Oncidium Gower Ramsey) and Lily (Lilium longiflorum), Exhibit Different Effects on Floral Transition and Formation in Arabidopsis thaliana. Plant Cell Physiol. 51:102 |
7 | Hsu HF, Hsu WH, Lee YI, et al. (2015) Model for perianth formation in orchids. Nature Plants 1:15046 DOI |
8 | Davies B, Egea-Cortines M, Andrade Silva E de, Saedler H, Sommer H (1996) Multiple interactions amongst floral homeotic MADS box proteins. EMBO J. 15:4330-43 DOI |
9 | Immink RG, Tonaco IA, Folter S de, et al. (2009) SEPALLATA3:the ‘glue’ for MADS box transcription factor complex formation. Genome Biol. 10:R24 DOI |
10 | Hu L, Liu S, Somers DJ (2012) Genome-wide analysis of the MADS-box gene family in cucumber. Genome 55:245-256 DOI |
11 | Irish VF, Litt A (2005) Flower development and evolution: gene duplication, diversification and redeployment. Curr. Opin. Genet. Dev. 15:454-460 DOI |
12 | Irish VF, Sussex IM (1990) Function of the apetala-1 gene during Arabidopsis floral development. Plant cell 2:741-53 DOI |
13 | Lu ZX, Wu M, Loh CS, Yeong CY, Goh CJ (1993) Nucleotide sequence of a flower-specific MADS box cDNA clone from orchid. Plant Mol. Biol. 23:901-904 DOI |
14 | Malcomber ST, Kellogg EA (2005) SEPALLATA gene diversification:brave new whorls. Trends Plant Sci. 10:427-435 DOI |
15 | Masiero S, Colombo L, Grini PE, Schnittger A, Kater MM (2011) The emerging importance of type I MADS box transcription factors for plant reproduction. Plant cell 23:865-72 DOI |
16 | Ohmori S, Kimizu M, Sugita M, et al. (2009) MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice. Plant cell 21: 3008-25 DOI |
17 | Mondragon-Palomino M, Theißen G (2011) Conserved differential expression of paralogous DEFICIENS- and GLOBOSA-like MADS-box genes in the flowers of Orchidaceae: refining the ‘orchid code’. Plant J. 66:1008-1019 DOI |
18 | Nam J, Kim J, Lee S, An G, Ma H, Nei M (2004) Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms. Proc. Natl. Acad. Sci. 101:1910-1915 DOI |
19 | Norman C, Runswick M, Pollock R, Treisman R (1988) Isolation and properties of cDNA clones encoding SRF, a transcription factor that binds to the c-fos serum response element. Cell 55:989-1003 DOI |
20 | Yanofsky MF, Ma H, Bowman JL, Drews GN, Feldmann KA, Meyerowitz EM (1990) The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors. Nature 346:35-39 DOI |
21 | Yu H, Goh CJ (2000) Identification and characterization of three orchid MADS-box genes of the AP1/AGL9 subfamily during floral transition. Plant physiol. 123:1325-36 DOI |
22 | Zhang GQ, Liu KW, Li Z, et al. (2017) The Apostasia genome and the evolution of orchids. Nature Publishing Group 549 |
23 | Zhang GQ, Xu Q, Bian C, et al. (2016) The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution. Scientific Reports 6:19029 DOI |
24 | Zhang H, Forde BG (2000) Regulation of Arabidopsis root development by nitrate availability. J. Exp. Bot. 51:51-59 DOI |
25 | Zhao T, Ni Z, Dai Y, Yao Y, Nie X, Sun Q (2006) Characterization and expression of 42 MADS-box genes in wheat (Triticum aestivum L.). Mol. Genet. Genomics 276:334-350 DOI |
26 | Zhao Y, Li X, Chen W, et al. (2011) Whole-genome survey and characterization of MADS-box gene family in maize and sorghum. Plant Cell, Tissue Organ Cult. 105:159-173 DOI |
27 | Cai J, Liu X, Vanneste K, et al. (2014) The genome sequence of the orchid Phalaenopsis equestris. Nat. Genet. 47:65-72 DOI |
28 | Boss PK, Sensi E, Hua C, Davies C, Thomas MR (2002) Cloning and characterisation of grapevine (Vitis vinifera L.) MADS-box genes expressed during inflorescence and berry development. Plant Sci 162:887-895 DOI |
29 | Bouyer D, Roudier F, Heese M, et al. (2011) Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase Transition. (GP Copenhaver, Ed.). PLoS Genet. 7:e1002014 DOI |
30 | Bowman JL, Smyth DR, Meyerowitzt EM (1991) Genetic interactions among floral homeotic genes of Arabidopsis. Development 112:1-20 DOI |
31 | Chang YY, Chiu YF, Wu JW, Yang CH (2009) Four Orchid (Oncidium Gower Ramsey) AP1/AGL9-like MADS Box Genes Show Novel Expression Patterns and Cause Different Effects on Floral Transition and Formation in Arabidopsis thaliana. Plant Cell Physiol. 50:1425-1438 DOI |
32 | Chang YY, Kao NH, Li JY, et al. (2010) Characterization of the possible roles for B class MADS box genes in regulation of perianth formation in orchid. Plant physiol. 152:837-53 DOI |
33 | Chen YY, Lee PF, Hsiao YY, et al. (2012) C- and D-class MADS-Box Genes from Phalaenopsis equestris (Orchidaceae) Display Functions in Gynostemium and Ovule Development. Plant Cell Physiol. 53:1053-1067 DOI |
34 | Duan W, Song X, Liu T, et al. (2015) Genome-wide analysis of the MADS-box gene family in Brassica rapa (Chinese cabbage). Mol. Genet. Genomics 290:239-255 |
35 |
De Bodt S, Raes J, Van de Peer Y, Thei |
36 | Diaz-Riquelme J, Lijavetzky D, Martinez-Zapater JM, Carmona MJ (2009) Genome-Wide Analysis of MIKCC-Type MADS Box Genes in Grapevine. Plant physiol. 149:354-369 DOI |
37 | Drews GN, Bowman JL, Meyerowitz EM (1991) Negative regulation of the Arabidopsis homeotic gene AGAMOUS by the APETALA2 product. Cell 65:991-1002 DOI |
38 | Eckardt NA (2003) MADS Monsters: Controlling Floral Organ Identity. PLANT CELL ONLINE 15:803-805 DOI |
39 | Egea-Cortines M, Saedler H, Sommer H (1999) Ternary complex formation between the MADS-box proteins SQUAMOSA, DEFICIENS and GLOBOSA is involved in the control of floral architecture in Antirrhinum majus. EMBO J. 18:5370-9 DOI |
40 | Coen ES, Meyerowitz EM (1991) The war of the whorls: genetic interactions controlling flower development. Nature 353:31-37 DOI |
41 | Fan CM, Wang X, Wang YW et al. (2013) Genome-Wide Expression Analysis of Soybean MADS Genes Showing Potential Function in the Seed Development. (T Zhang, Ed.). PLoS ONE 8:e62288 DOI |
42 |
Fischer A, Baum N, Saedler H, Thei |
43 | Tsai WC, Lee PF, Chen HI, Hsiao YY, Wei WJ, et al.(2005) PeMADS6, a GLOBOSA/PISTILLATA-like gene in Phalaenopsis equestris involved in petaloid formation, and correlated with flower longevity and ovary development. Plant Cell Physiol. 46: 1125-1139 DOI |
44 | Shimeld SM (1999) Gene function, gene networks and the fate of duplicated genes. Semin. Cell Dev. Biol. 10:549-553 DOI |
45 | Theissen G, Kim JT, Saedler H (1996) Classification and phylogeny of the MADS-box multigene family suggest defined roles of MADS-box gene subfamilies in the morphological evolution of eukaryotes. J. Mol. Evol. 43:484-516 DOI |
46 | Theissen G, Saedler H (2001) Plant biology. Floral quartets. Nature 409:469-71 DOI |
47 | Tian Y, Dong Q, Ji Z, Chi F, Cong P, Zhou Z (2015) Genome-wide identification and analysis of the MADS-box gene family in apple. Gene 555:277-290 DOI |
48 | Tsai WC, Kuoh CS, Chuang MH, Chen WH, et al. (2004) Four DEF-Like MADS Box Genes Displayed Distinct Floral Morphogenetic Roles in Phalaenopsis Orchid. Plant Cell Physiol. 45:831-844 DOI |
49 | Wang SY, Lee PF, Lee YI, et al. (2011) Duplicated C-Class MADS-Box Genes Reveal Distinct Roles in Gynostemium Development in Cymbidium ensifolium (Orchidaceae). Plant Cell Physiol. 52:563-577 DOI |
50 | Wei B, Zhang RZ, Guo JJ, et al. (2014) Genome-Wide Analysis of the MADS-Box Gene Family in Brachypodium distachyon. (S Lin, Ed.). PLoS ONE 9:e84781 DOI |
51 | Wells CE, Vendramin E, Jimenez Tarodo S, Verde I, Bielenberg DG (2015) A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch]. BMC Plant Biol. 15:41 DOI |
52 | Xu Y, Teo LL, Zhou J, Kumar PP, Yu H (2006) Floral organ identity genes in the orchid Dendrobium crumenatum. Plant J 46:54-68 DOI |
53 | Alvarez-Buylla ER, Pelaz S, Liljegren SJ, et al. (2000a) An ancestral MADS-box gene duplication occurred before the divergence of plants and animals. Proc. Natl. Acad. Sci. U. S. A. 97:5328-33 DOI |
54 | Zobell O, Faigl W, Saedler H, Munster T (2010) MIKC* MADS-Box Proteins: Conserved Regulators of the Gametophytic Generation of Land Plants. Mol. Biol. Evol. 27:1201-1211 DOI |
55 | Aceto S, Gaudio L (2011) The MADS and the Beauty: Genes Involved in the Development of Orchid Flowers. Curr Genomics 12:342-356 DOI |
56 | Acri-Nunes-Miranda R, Mondragon-Palomino M (2014) Expression of paralogous SEP-, FUL-, AG- and STK-like MADS-box genes in wild-type and peloric Phalaenopsis flowers. Front. Plant sci 5:76 DOI |
57 | Adamczyk BJ, Fernandez DE (2009) MIKC* MADS Domain Heterodimers Are Required for Pollen Maturation and Tube Growth in Arabidopsis. PLANT Physiol. 149:1713-1723 DOI |
58 | Alvarez-Buylla ER, Liljegren SJ, Pelaz S, et al. (2000b) MADS-box gene evolution beyond flowers: expression in pollen, endosperm, guard cells, roots and trichomes. Plant J. 24:457-66 DOI |
59 | Angenent GC, Colombo L (1996) Molecular control of ovule development. Trends Plant Sci. 1:228-232 DOI |
60 | Arora R, Agarwal P, Ray S, et al. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8:242 DOI |
61 | Bemer M, Wolters-Arts M, Grossniklaus U, Angenent GC (2008) The MADS Domain Protein DIANA Acts Together with AGAMOUS-LIKE80 to Specify the Central Cell in Arabidopsis Ovules. Plant Cell Online 20:2088-2101 DOI |
62 | Kramer EM, Dorit RL, Irish VF (1998) Molecular evolution of genes controlling petal and stamen development: duplication and divergence within the APETALA3 and PISTILLATA MADS-box gene lineages. Genetics 149:765-83 DOI |
63 | Parenicova L, Folter S de, Kieffer M, et al. (2003) Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant cell 15:1538-51 DOI |
64 |
Passmore S, Maine GT, Elble R, Christ C, Tye B-K (1988) Saccharomyces cerevisiae protein involved in plasmid maintenance is necessary for mating of MAT |
65 | Pelaz S, Ditta GS, Baumann E, Wisman E, Yanofsky MF (2000) B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature 405:200-203 DOI |
66 | Jofuku KD, Boer BG den, Montagu M Van, Okamuro JK (1994) Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. Plant Cell 6:1211-1225 DOI |
67 | Kang IH, Steffen JG, Portereiko MF, Lloyd A, Drews GN (2008) The AGL62 MADS domain protein regulates cellularization during endosperm development in Arabidopsis. Plant cell 20:635-47 DOI |
68 | Li C, Wang Y, Xu L, et al. (2016) Genome-Wide Characterization of the MADS-Box Gene Family in Radish (Raphanus sativus L.) and Assessment of Its Roles in Flowering and Floral Organogenesis. Front. Plant Sci. 07:1390 |
69 | Lin CS, Hsu CT, Liao DC, et al. (2016) Transcriptome-wide analysis of the MADS-box gene family in the orchid Erycina pusilla. Plant Biotechnol. J.14:284-298 DOI |
70 | Liu C, Chen H, Er HL, et al. (2008) Direct interaction of AGL24 and SOC1 integrates flowering signals in Arabidopsis. Development 135:1481-1491 DOI |
71 |
Mondragon-Palomino M, Nter Thei |
72 | Masiero S, Colombo L, Grini PE, Schnittger A, et al. (2011) The emerging importance of type I MADS box transcription factors for plant reproduction. Plant cell 23: 865-872 DOI |
73 | Meyerowitz E, Bowman J, Brockman L (1991) A genetic and molecular model for flower development in Arabidopsis thaliana. Dev. Suppl. I 157-161 |
74 | Michaels SD, Amasino RM (1999) FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering. Plant cell 11:949-56 DOI |
75 |
Mondragon-Palomino M, Thei |
76 | Riechmann JL, Meyerowitz EM (1997) MADS domain proteins in plant development. Biol. Chem. 378:1079-101 |
77 | Pnueli L, Abu-Abeid M, Zamir D, Nacken W, Schwarz-Sommer Z, et al. (1991) The MADS box gene family in tomato: temporal expression during floral development, conserved secondary structures and homology with homeotic genes from Antirrhinum and Arabidopsis. Plant J. 1:255-266 DOI |
78 | Portereiko MF, Lloyd A, Steffen JG, Punwani JA, Otsuga D, Drews GN (2006) AGL80 Is Required for Central Cell and Endosperm Development in Arabidopsis. Plant Cell Online 18:1862-1872 DOI |
79 | Riechmann JL, Krizek BA, Meyerowitz EM (1996) Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS. Proc. Natl. Acad. Sci. U. S. A. 93:4793-8 DOI |
80 | Rouse DT, Sheldon CC, Bagnall DJ, Peacock WJ, Dennis ES (2002) FLC, a repressor of flowering, is regulated by genes in different inductive pathways. The Plant journal: for cell and molecular biology 29:183-91 DOI |
81 | Sharma A, Shumayla, Tyagi S, Alok A, Singh K, Upadhyay SK (2019) Thaumatin-like protein kinases: Molecular characterization and transcriptional profiling in five cereal crops. Plant Science 290 https://doi.org/10.1016/j.plantsci.2019.110317 |
82 | Sommer H, Beltran JP, Huijser P, et al. (1990) Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. EMBO J. 9:605-13 DOI |
83 | Shore P, Sharrocks AD (1995) The MADS-box family of transcription factors. Eur. J. Biochem. 229:1-13 DOI |
84 | Shu Y, Yu D, Wang D, Guo D, Guo C (2013) Genome-wide survey and expression analysis of the MADS-box gene family in soybean. Mol. Biol. Rep. 40:3901-3911 DOI |
85 | Skipper M, Johansen LB, Pedersen KB, Frederiksen S, Johansen BB (2006) Cloning and transcription analysis of an AGAMOUS-and SEEDSTICK ortholog in the orchid Dendrobium thyrsiflorum (Reichb. f.). Gene 366:266-274 DOI |
86 | Song IJ, Nakamura T, Fukuda T, et al. (2006) Spatiotemporal expression of duplicate AGAMOUS orthologues during floral development in Phalaenopsis. Dev. Genes Evol. 216:301-313 DOI |
87 | Southerton SG, Marshall H, Mouradov A, Teasdale RD (1998) Eucalypt MADS-Box Genes Expressed in Developing Flowers. Plant Physiol. 118:365-372 DOI |
88 | Tapia-Lopez R, Garcia-Ponce B, Dubrovsky JG, et al. (2008) An AGAMOUS-Related MADS-Box Gene, XAL1 (AGL12), Regulates Root Meristem Cell Proliferation and Flowering Transition in Arabidopsis. Plant physiol 146:1182-1192 DOI |
89 | Theissen G (2001) Development of floral organ identity: stories from the MADS house. Curr. Opin. Plant Biol. 4:75-85 DOI |
90 | Theissen G, Becker A, Rosa A Di, et al. (2000) A short history of MADS-box genes in plants. Plant Mol. Biol. 42:115-49 DOI |
91 | Yan L, Wang X, Liu H, et al. (2015) The Genome of Dendrobium officinale Illuminates the Biology of the Important Traditional Chinese Orchid Herb. Mol. Plant 8:922-934 DOI |
![]() |