Genome-wide analysis of heterosis-related genes in non-heading Chinese cabbage |
Yi, Hankuil
(Department of Biological Sciences, College of Biological Science and Biotechnology, Chungnam National University)
Lee, Jeongyeo (Department of Biological Sciences, College of Biological Science and Biotechnology, Chungnam National University) Song, Hayong (Department of Biological Sciences, College of Biological Science and Biotechnology, Chungnam National University) Dong, Xiangshu (School of Agriculture, Yunnan University) Hur, Yoonkang (Department of Biological Sciences, College of Biological Science and Biotechnology, Chungnam National University) |
1 | Song H, Yi H, Do c, Han CT, Nou IS, Hur Y (2017) Genome-wide analysis of gene expression to distinguish photoperiod-dependent and -independent flowering in Brassicaceae. Genes Genom 39:207-223 DOI |
2 |
Stupar RM, Springer NM (2006) Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the |
3 | Stupar RM, Gardiner JM, Oldre AG, Haun WJ, Chandler VL, Springer NM (2008) Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis. BMC Plant Biol 8:33 DOI |
4 | Tsaftaris AS (1995) Molecular aspects of heterosis in plants. Physiol Plant 94:362-370 DOI |
5 | Wang L, Wu LM, Greaves IK, Zhu A, Dennis ES, Peacock WJ (2017) PIF4-controlled auxin pathway contributes to hybrid vigor in Arabidopsis thaliana. Proc Natl Acad Sci USA 114:E3555-E3562 DOI |
6 | Wang T, Sui Z, Liu X, Li Y, Li H, Xing J, Song F, Zhang Y, Sun Q, Ni Z (2016) Ectopic expression of a maize hybrid up-regulated gene, ErbB-3 binding Protein 1 (ZmEBP1), increases organ size by promoting cell proliferation in Arabidopsis. Plant Sci 243:23-34 DOI |
7 | Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielser HB, Saxild HH, Nielsen C, Brunak S, Knudsen S (2002) A new non-linear normalization method for reducing variability in DNA microarray experiments. Genome Biol 3:research0048 |
8 | Yang Y, Wu X, Xuan H, Gao Z (2016) Functional analysis of plant NB-LRR gene L3 by using E. coli. Biochem Biophys Res Commun 478:1569-1574 DOI |
9 | Zemach A, Kim MY, Hsieh PH, Coleman-Derr D, Eshed-Williams L, Thao K, Harmer SL, Zilberman D (2013) The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 153:193-205 DOI |
10 | Auger DL, Gray AD, Ream TS, Kato A, Coe EH Jr, Birchler JA (2005) Nonadditive gene expression in diploid and triploid hybrids of maize. Genetics 169:389-397 |
11 | Baranwal VK, Mikkilineni V, Zehr UB, Tyagi AK, Kapoor S (2012) Heterosis: emerging ideas about hybrid vigour. J Exp Bot 63:6309-6314 DOI |
12 | Basunanda P, Radoev M, Ecke W, Friedt W, Becker HC, Snowdon RJ (2010) Comparative mapping of quantitative trait loci involved in heterosis for seedling and yield traits in oilseed rape (Brassica napus L.). Theor Appl Genet 120: 271-281 DOI |
13 | Charlesworth D, Willis JH (2009) The genetics of inbreeding depression. Nat Rev Genet 10:783-96 DOI |
14 | Chen ZF (2013) Genomic and epigenetic insights into the molecular bases of heterosis. Nat Rev Genet 14:471-482 DOI |
15 | Dong X, Feng H, Xu M, Lee J, Kim YK, Lim YP, Piao Z, Park YD, Ma H, Hur Y (2013) Comprehensive analysis of genic male sterility-related genes in Brassica rapa using a newly developed Br300K oligomeric chip. PLoS One 8: e72178 DOI |
16 | Eitas TK, Nimchuk ZL, Dangl JL (2008) Arabidopsis TAO1 is a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB. Proc Natl Acad Sci USA. 105:6475-6480 DOI |
17 | Fu D, Xiao M, Hayward A, Jiang G, Zhu L, Zhou Q, Li J, Zhang M (2015) What is crop heterosis: new insights into an old topic. J Appl Genetics 56:1-13 DOI |
18 | Greaves IK, Gonzalez-Bayon R, Wang L, Zhu A, Liu PC, Groszmann M, Peacock WJ, Dennis ES (2015) Epigenetic changes in hybrids. Plant Physiol 168:1197-1205 DOI |
19 | Groszmann M, Greaves IK, Fujimoto R, Peacock WJ, Dennis ES (2013) The role of epigenetics in hybrid vigour. Trends Genet 29:684-690 DOI |
20 |
Groszmann M, Greaves IK, Albertyn ZI, Scofield GN, Peacock WJ, Dennis ES (2011) Hormone-regulated defense and stress response networks contribute to heterosis in Arabidopsis |
21 | Guo M, Rupe MA, Yang X, Crasta O, Zinselmeier C, Smith OS, Bowen B (2006) Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis. Theor Appl Genet 113:831-845 DOI |
22 |
Hatsugai N, Hillmer R, Yamaoka S, Hara-Nishimura I, Katagiri F (2016) The |
23 | Hochholdinger F, Hoecker N (2007) Towards the molecular basis of heterosis. Trends Plant Sci 12:427-432 DOI |
24 | Hou XL, Cao SC, Zhang SN, Zhang ZC, Wang JJ, Sun HX (2005) Selection of non-heading Chinese cabbage cultivar Shulu with high-quality. J Nanging Agr Univ 28:30-33 |
25 | Irizarry RA, Hobbs B, Collin F, Beazer-barclay YD, Antonellis KJ, Scherf U, Speed TP (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4:249264 |
26 | Kumar S, Kanakachari M, Gurusamy D, Kumar K, Narayanasamy P, Kethireddy Venkata P, Solanke A, Gamanagatti S, Hiremath V, Katageri IS, Leelavathi S, Kumar PA, Reddy VS (2016) Genome-wide transcriptomic and proteomic analyses of bollworm-infested developing cotton bolls revealed the genes and pathways involved in the insect pest defense mechanism. Plant Biotechnol J 14:1438-1455 DOI |
27 | Jeong SY, Ahmed NU, Jung HJ, Kim HT, Park JI, Nou IS (2017) Discovery of candidate genes for heterosis breeding in Brassica oleracea L. Acta Physiol Plant 39:180 DOI |
28 | Kawanabe T, Ishikura S, Miyaji N, Sasaki T, Wu LM, Itabashi E, Takada S, Shimizu M, Takasaki-Yasuda T, Osabe K, Peacock WJ, Dennis ES, Fujimoto R. (2016) Role of DNA methylation in hybrid vigor in Arabidopsis thaliana. Proc Natl Acad Sci USA. 113: E6704-E6711 DOI |
29 | Kim GT, Shoda K, Tsuge T, Cho KH, Uchimiya H, Yokoyama R, Nishitani K, Tsukaya H (2002) The ANGUSTIFOLIA gene of Arabidopsis, a plant CtBP gene, regulates leaf-cell expansion, the arrangement of cortical microtubules in leaf cells and expression of a gene involved in cell-wall formation. EMBO J 21:1267-1279 DOI |
30 | Ko DK, Rohozinski D, Song Q, Taylor SH, Juenger TE, Harmon FG, Chen ZJ (2016) Temporal shift of circadian-mediated gene expression and carbon fixation contributes to biomass heterosis in maize hybirds. PLoS Genet 12:e1006197 DOI |
31 | Lewis JD, Wu R, Guttman DS, Desveaux D (2010) Allele-specific virulence attenuation of the Pseudomonas syringae HopZ1a type III effector via the Arabidopsis ZAR1 resistance protein. PLoS Genet 6:e1000894 DOI |
32 | Li A, Fang MD, SongWQ, Chen CB, Qi LW, Wang CG (2012) Gene expression profiles of two intraspecific Larix lines and their reciprocal hybrids. Mol Biol Rep 39:3773-3784 DOI |
33 | Plotner B, Nurmi M, Fischer A, Watanabe M, Schneeberger K, Holm S, Vaid N, Schottler MA, Walther D, Hoefgen R, Weigel D, Laitinen RAE (2017) Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. Plant J 91:251-262 DOI |
34 | Li D, Huang Z, Song S, Xin Y, Mao D, Lv Q, Zhou M, Tian D, Tang M, Wu Q, Liu X, Chen T, Song X, Fu X, Zhao B, Liang C, Li A, Liu G, Li S, Hu S, Cao X, Yu J, Yuan L, Chen C, Zhu L (2016) Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase. Proc Natl Acad Sci USA 113:E6026-E6035 DOI |
35 | Lippman ZB, Zamir D (2007) Heterosis: revisiting the magic. Trends Genet 23:60-66 DOI |
36 | Meyer S, Pospisil H, Scholten S (2007) Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern. Plant Mol Biol 63:381-391 DOI |
37 | Miller M, Song Q, Shi X, Juenger TE, Chen ZJ (2015) Natural variation in timing of stress-responsive gene expression predicts heterosis in intraspecific hybrids of Arabidopsis. Nat Commun 6:7453 DOI |
38 | Ni Z, Kim ED, Ha M, Lackey E, Liu J, Zhang Y, Sun Q, Chen ZJ (2009) Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature 457:327-331 DOI |
39 | Romagnoli S, Maddaloni M, Livini C, Motto M (1990) Relationship between gene expression and hybrid vigor in primary root tips of young maize (Zea mays L) plantlets. Theor Appl Genet 80:767-775 |
40 | Saeki N, Kawanabe T, Ying H, Shimizu M, Kojima M, Abe H, Okazaki K, Kaji M, Taylor JM, Sakakibara H, Peacock WJ, Dennis ES, Fujimoto R (2016) Molecular and cellular characteristics of hybrid vigour in a commercial hybrid of Chinese cabbage. BMC Plant Biol 16:45 DOI |
41 | Sarazin V, Duclercq J, Mendou B, Aubanelle L, Nicolas V, Aono M, Pilard S, Guerineau F, Sangwan-Norreel B, Sangwan RS (2015) Arabidopsis BNT1, an atypical TIR-NBS-LRR gene, acting as a regulator of the hormonal response to stress. Plant Sci 239:216-229 DOI |
42 | Schnable PS, Springer NM (2013) Progress toward understanding heterosis in crop plants. Annu Rev Plant Biol 64:71-88 DOI |
43 | Shen H, He H, Li J, Chen W, Wang X, Guo L, Peng Z, He G, Zhong S, Qi Y, Terzaghi W, Deng XW (2012) Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell 24:875-892 DOI |
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