Simple sequence repeat marker development from Codonopsis lanceolata and genetic relation analysis |
Kim, Serim
(Department of Industrial Plant Science & Technology, Chungbuk National University)
Jeong, Ji Hee (Seed & Seedling Management Division, Korea Forest Seed and Variety Center) Chung, Hee (Department of Industrial Plant Science & Technology, Chungbuk National University) Kim, Ji Hyeon (Life Sciences Research Institute, Biomedic Co., Ltd.) Gil, Jinsu (Department of Industrial Plant Science & Technology, Chungbuk National University) Yoo, Jemin (Department of Industrial Plant Science & Technology, Chungbuk National University) Um, Yurry (National Institute of Horticultural and Herbal Science, Rural Development Administration) Kim, Ok Tae (National Institute of Horticultural and Herbal Science, Rural Development Administration) Kim, Tae Dong (Seed & Seedling Management Division, Korea Forest Seed and Variety Center) Kim, Yong-Yul (Seed & Seedling Management Division, Korea Forest Seed and Variety Center) Lee, Dong Hoon (Department of Bio-systems Engineering, Chungbuk National University) Kim, Ho Bang (Faculty of Biotechnology, College of Applied Life Sciences, Jeju National University) Lee, Yi (Department of Industrial Plant Science & Technology, Chungbuk National University) |
1 | Badiane FA, Gowda BS, Cisse N, Diouf D, Sadio O, Timko MP (2012) Genetic relationship of cowpea (Vigna unguiculata) varieties from senegal based on SSR markers. Genet Mol Res 11:292-304 DOI |
2 | Bang KH, Jo IH, Chung JW, Kim YC, Lee JW, Seo AY, Park JH, Kim OT, Hyun DY, Kim DH, Cha SW (2011) Analysis of genetic polymorphism of Korean ginseng cultivars and foreign accessions using SSR markers. Korean J Med Crop Sci 19:347-353 DOI |
3 | Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32:314-331 |
4 | Doo HS, Ryu JH, Lee KS, Li HL, Liu XH (2002) Analysis of genetic relationship by RAPD technique for Codonopsis lanceolata Trauty collected from the Baekdoo Mountain and Korea. Korean J Med Crop Sci 10:194-199 |
5 | Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11-15 |
6 | Gao JP, Wang D, Cao LY, Sun HF (2015) Transcriptome sequencing of Codonopsis pilosula and identification of candidate genes involved in polysaccharide biosynthesis. PLoS ONE 10.2:e0117342 DOI |
7 | Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. Methods Enzymol 395:202-222 DOI |
8 | Guo WL, Gong L, Ding ZF, Li YD, Li FX, Zhao SP, Liu B (2006) Genomic instability in phenotypically normal regenerants of medicinal plant Codonopsis lanceolata Benth. et Hook. f., as revealed by ISSR and RAPD markers. Plant Cell Rep 25:896-906 DOI |
9 | He JY, Ma N, Zhu S, Komatsu K, Li ZY, Fu WM (2015) The genus Codonopsis (Campanulaceae): a review of phytochemistry, bioactivity and quality control. J Nat Med 69:1-21 DOI |
10 | He X, Zou Y, Yoon WB, Park SJ, Park DS, Ahn J (2011) Effects of probiotic fermentation on the enhancement of biological and pharmacological activities of Codonopsis lanceolata extracted by high pressure treatment. J Biosci Bioeng 112:188-193 DOI |
11 | Ichikawa M, Ohta S, Komoto N, Ushijima M, Kodera Y, Hayama M, Shirota O, Sekita S, Kuroyanagi M (2009) Simultaneous determination of seven saponins in the roots of Codonopsis lanceolata by liquid chromatography-mass spectrometry. J Nat Med 63:52-57 DOI |
12 | Jung SW, Han AJ, Hong HJ, Choung MG, Kim KS, Park SH (2006) -glucosidase inhibitors from the roots of Codonopsis lanceolata Trautv. Agric Chem Biotechnol 49:162-164 |
13 | Kim HJ, Yeo SS, Han DY, Park YH (2015) Interspecific transferability of watermelon EST-SSRs assessed by genetic relationship analysis of cucurbitaceous crops. Kor J Hort Sci Technol 33:93-105 |
14 | Lee KT, Choi J, Jung WT, Nam JH, Jung HJ, Park HJ (2002) Structure of a new echinocystic acid bisdesmoside isolated from Codonopsis lanceolata roots and the cytotoxic activity of prosapogenins. J Agric Food Chem 50:4190-4193 DOI |
15 | Lee MY, Mo SY, Kim DW, Oh SE, Ko BS (2001) Discrimination and genetic relationship of Adenophorae triphylla (Thunb) A. DC. var. japonica Hara and Codonopsis lanceolata Trauty using RAPD analysis. Korean J Med Crop Sci 9:205-210 |
16 | Li Z, Liu X, Wang X, Fan B, Wang X, Zhao G (2013) Isolation and characterization of novel microsatellite markers in Codonopsis tangshen (Campanulaceae). Conserv Genet Res 5:393-395 DOI |
17 | Li ZH, Wen HY, Chen J, Wu GL, Wang YJ (2009) Development of 10 polymorphic microsatellite loci primers for Codonopsis pilosula Nannf. (Campanulaceae). Conserv Genet 10:747-749 DOI |
18 | Park SH, Choi SR, Lee JS, Nguyen VD, Kim SG, Lim YP (2013) Analysis of the genetic diversity of radish germplasm through SSR markers derived from chinese cabbage. Korean J Hort Sci 31:457-466 |
19 | Liu KJ, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128-2129 DOI |
20 | Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590 |
21 | Reed SM, Rinehart TA (2009) Simple-sequence repeat marker analysis of genetic relationships within Hydrangea paniculata. HortSci 44:27-31 |
22 | Rohlf FJ (1992) NTSYS-pc:numerical taxonomy and multivariate analysis system. Applied Biostatistics |
23 | Roldan-Ruiz I, Dendauw J, Van Bockstaele E, Depicker A, De Loose M (2000) AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.). Mol Breed 6:125-134 DOI |
24 | Sathiyamoorthy S, In JG, Lee OR, Lee BS, Devi SR, Yang DC (2011) In silico gene expression analysis in Codonopsis lanceolata root. Mol Biol Rep 38:3541-3549 DOI |
25 | Ushijima M, Komoto N, Sugizono Y, Mizuno I, Sumihiro M, Ichikawa M, Hayama M, Kawahara N, Nakane T, Shirota O, Sekita S, Kuroyanagi M (2008) Triterpene glycosides from the roots of Codonopsis lanceolata. Chem Pharm Bull 56: 308-314 DOI |
26 | Yap IV, Nelson RJ (1996) Winboot: a program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms. International Rice Research Institute. Manila, Philippines. pp.1-22. |
27 | Yoo KO, Lee WT (1989) A taxonomic study of the genus Codonopsis in Korea. Kor J Plant Tax 19:81-102 DOI |
28 | Zane L, Bargelloni L, Patarnello T (2002) Strategies for microsatellite isolation: a review. Mol Ecol 11:1-6 DOI |