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http://dx.doi.org/10.5010/JPB.2012.39.3.121

Establishment of rapid discrimination system of leguminous plants at metabolic level using FT-IR spectroscopy with multivariate analysis  

Song, Seung-Yeob (Green Bio Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB))
Ha, Tae-Joung (Research Policy Bureau, R&D Performance Evaluation & Management Division, RDA)
Jang, Ki-Chang (Department of Functional Crop, National Institute of Crop Science (NICS), Rural Development Administration (RDA))
Kim, In-Jung (Department of Biotechnology, Jeju National University)
Kim, Suk-Weon (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB))
Publication Information
Journal of Plant Biotechnology / v.39, no.3, 2012 , pp. 121-126 More about this Journal
Abstract
To determine whether FT-IR spectroscopy combined with multivariate analysis for whole cell extracts can be used to discriminate major leguminous plant at metabolic level, seed extracts of six leguminous plants were subjected to Fourier transform infrared spectroscopy (FT-IR). FT-IR spectral data from seed extracts were analyzed by principal component analysis (PCA), partial least square discriminant analysis (PLS-DA) and hierarchical clustering analysis (HCA). The PCA could not fully discriminate six leguminous plants, however PLS-DA could successfully discriminate six leguminous plants. The hierarchical dendrogram based on PLS-DA separated the six leguminous plants into four branches. The first branch was consisted of all three Vigna species including Vigna radiata var. radiate, Vigna angularis var. angularis and Vigna unguiculata subsp. Unguiculata. Whereas Pisum sativum var. sativum, Glycine max L and Phaseolus vulgaris var. vulgaris were clustered into a separate branch respectively. The overall results showed that metabolic discrimination system were in accordance with known phylogenic taxonomy. Thus we suggested that the hierarchical dendrogram based on PLS-DA of FT-IR spectral data from seed extracts represented the most probable chemotaxonomical relationship between six leguminous plants.
Keywords
Fourier transformation - infrared spectroscopy; leguminous plants; metabolic discrimination; Partial least square discriminant analysis (PLS-DA); Principal component analysis (PCA);
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Times Cited By KSCI : 7  (Citation Analysis)
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