Genetic mapping and sequence analysis of Phi class Glutathione S-transferases (BrGSTFs) candidates from Brassica rapa |
Park, Tae-Ho
(Genomics Division, National Academy of Agricultural Science)
Jin, Mi-Na (Genomics Division, National Academy of Agricultural Science) Lee, Sang-Choon (Genomics Division, National Academy of Agricultural Science) Hong, Joon-Ki (Genomics Division, National Academy of Agricultural Science) Kim, Jung-Sun (Genomics Division, National Academy of Agricultural Science) Kim, Jin-A (Genomics Division, National Academy of Agricultural Science) Kwon, Soo-Jin (Genomics Division, National Academy of Agricultural Science) Zang, Yun-Xiang (Genomics Division, National Academy of Agricultural Science) Park, Young-Doo (Department of Horticultural Biotechnology, College of Life Science, Kyung Hee University) Park, Beom-Seok (Genomics Division, National Academy of Agricultural Science) |
1 | Yang K-Y, Kim E-Y, Kim C-S, Guh J-O, Kim K-C and Cho B-H (1998) Characterization of a glutathione S-transferase gene AtGST1 in Arabidopsis thaliana. Plant Cell Rep 17: 700-704 DOI |
2 | Rea PA (1999) MRP subfamily ABC transporters from plants and yeast. J Exp Bot 50: 895-913 DOI |
3 | Reinemer P, Prade L, Hof P, Neuefeind T, Huber R, Zettl R, Palme K, Schell J, Koelln I, Bartunik HD and Bieseler B (1996) Three-dimensional structure of glutathione S-transferase from Arabidopsis thaliana at 2.2 Å resolution: structural characterization of herbicide-conjugation plant glutathione S-transferases and a novel active site architecture. J Mol Biol 255: 289-309 DOI ScienceOn |
4 | Saitou N and Nei M (1987) The neighbor-joining method: a new method for reconstruction Phylogenetic trees. Mol Biol Evol 4: 406-425 |
5 | Dixon DP, Lapthorn A and Edwards R (2002b) Plant glutathione transferases. Genome Biol 3: reviews 3004.1-3004.10 |
6 | Lukashin AV and Borodovsky M (1998) GeneMark.Hmm: new solutions for gene finding. Nucl Acids Res 26: 1107-1115 DOI |
7 | Yang T-J, Kim J-S, Kwon S-J, Lim K-B, Choi B-S, Kim J-A, Jin M, Park JY, Lim M-H, Kim H-I, Lim YP, Kang JJ, Hong J-H, Kim C-B, Bhak J, Bancroft I and Park B-S (2006) Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa. Plant Cell 18: 1339-1347 DOI ScienceOn |
8 | Lee S-C, Lim M-H, Kim JA, Lee S-I, Kim JS, Jin M, Kwon S-J, Mun J-H, Kim Y-K, Kim HU, Hur Y and Park B-S (2008) Transcriptome analysis in Brassica rapa under the abiotic stresses using Brassica 24K oligo microarray. Mol Cells 26: in press |
9 | Gasper AV, Al-janobi A, Smith JA, Bacon JR, Fortun P, Atherton C, Taylor M, Hawkey CJ, Barrett DA and Mithen RF (2005) Glutathione S-transferase M1 polymorphism and metabolism of sulforaphane from standard and high-glucosinolate broccoli. Am J Clin Nutr 82: 1283-1291 DOI |
10 | Hatton PJ, Dixon D, Cole DJ and Edwards R (1996) Glutathione transferase activity and herbicide selectivity in maize and associated weed species. Pestic Sci 46: 267-275 DOI ScienceOn |
11 | Thom R, Cummins I, Dixon DP, Edwards R, Cole DJ and Lapthorn AJ (2002) Structure of a Tau class glutathione S-transferase from wheat active in herbicide detoxification. Biochemistry 41: 7008-7020 DOI ScienceOn |
12 | Nutricati E, Miceli A, Blando F and De Bellis L (2006) Characterization of two Arabidopsis thaliana glutathione S-transferases. Plant Cell Rep 25: 997-1005 DOI |
13 | Lin X, Kaul S, Rounsley S, Shea TP, Benito MI, Town CD, Fujii CY, Mason T, Bowman CL, Barnstead M, Feldblyum TV, Buell CR, Ketchum KA, Lee J, Ronning CM, Koo HL, Moffat KS, Cronin LA, Shen M, Pai G, van Aken S, Umayam L, Tallon LJ, Gill JE, Adams MD, Carrera AJ, Creasy TH, Goodman HM, Somerville CR, Copenhavor GP, Preuss D, Nierman WC, White O, Eisen JA, Salzberg SL, Fraser CM and Venter JC (1999) Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Nature 402: 761-768 DOI ScienceOn |
14 | DeRidder BP, Dixon DP, Beussman DJ, Edwards R and Goldsbrough PB (2002) Induction of glutathione Stransferases in Arabidopsis by herbicide safeners. Plant Physiol 130: 1497-1505 DOI ScienceOn |
15 | Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer G, Bouck J, Gibbs R, Hardison R and Miller W (2000) PipMaker-a web server for aligning two genomic DNA sequences. Genome Res 10: 577-586 DOI |
16 | Dixon DP, Davies BG and Edwards E (2002a) Functional divergence in the glutathione transferase superfamily in plant. J Biol Chem 277: 30859-30869 DOI ScienceOn |
17 | Forva C (2006) Glutathione transferases in the genomics era: new insights and perspectives. Biomol Eng 23: 149-169 DOI ScienceOn |
18 | Kim JS, Chung TY, King GJ, Jin M, Yang T-J, Jin Y-M, Kim H-I and Park B-S (2006) A sequence-tagged linkage map of Brassica rapa. Genetics 174: 29-39 DOI ScienceOn |
19 | Park J, Koo DH, Hong CP, Lee SJ, Jeon JW, Lee SH, Yun PY, Park BS, Kim HR, Bang JW, Plaha P, Bancroft I and Lim YP (2005) Physical mapping and microsynteny of Brassica rapa ssp. pekinensis genome corresponding to a 222 kbp gene-rich region of Arabidopsis chromosome 4 and partially duplicated on chromosome 5. Mol Genet Genomics 274: 579-588 DOI |
20 | Rana D, van den Boogaart T, O'Neill CM, Hynes L, Bent E, Macpherson L, Park JY, Lim YP and Bancroft I (2004) Conservation of the microstructure of genome segments in Brassica rapa and its diploid relatives. Plant J 40: 725-733 DOI ScienceOn |
21 | Neuefeind T, Huber R, Reinemer P, Knäblein J, Prade L, Mann K and Bieseler B (1997b) Cloning, sequencing, crystalization and X-ray structure of glutathione S-transferase-III from Zea mays var. mutin: a leading enzyme in detoxification of maize herbicides. J Mol Biol 274: 577-587 DOI ScienceOn |
22 | Yuan Q, Hill J, Hsiao J, Moffat K, Ouyang S, Cheng Z, Jiang J and Buell CR (2002) Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion. Mol Genet Genomics 267: 713-720 DOI |
23 | Ambrosone CB, McCann SE, Freudenheim JL, Marchall JR, Zhang Y and Shields PG (2004) Breast cancer risk in premenopausal women is inversely associated with consumption of broccoli, a source of isothiocyanates, but is not modified by GST genotype. J Nutr 134: 1134-1138 |
24 | Zettl R, Schell J and Palme K (1994) Photoaffinity labeling of Arabidopsis thaliana plasma membrane vesicles by 5-azido-[7-]indole-3-acetic acid: identification of a glutathione S-transferase. Proc Natl Acad Sci USA 91: 689-693 DOI |
25 | Zhang Y, Munday R, Jobson HE, Munday CM, Lister C, Wilson P, Fahey JW and Mhawech-Fauceglia P (2006) Induction of GST and NQO1 in cultured bladder cells and in the urinary bladders of rats by an extract of broccoli (Brassica oleracea) sprouts. J Agric Food Chem 13: 9370-9376 |
26 | Zhou J and Goldsbrough PB (1993) An Arabidopsis gene with homology to glutathione S-transferases is regulated by ethylene. Plant Mol Biol 22: 517-523 DOI |
27 | Buono DD, Scarponi L and Espen L (2007) Glutathione S-transferases in Festuca arundinacea: identification, characterization and inducible by safeners benoxacor. Phytochemistry 68: 2614-2624 DOI ScienceOn |
28 | O'Neill CM and Bancroft I (2000) Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana. Plant J 23: 233-243 DOI ScienceOn |
29 | Kiyosue T, Yamaguchi-Shinozaki K and Shinozaki K (1993) Characterization of two cDNAs (ERD11) and (ERD13) for dehydration-inducible genes that encode putative glutathione S-transferases in Arabidopsis thaliana L. FEBS Lett 335: 189-192 DOI ScienceOn |
30 | Neuefeind T, Huber R, Dasenbrock H, Prade L and Bieseler B (1997a) Crystal structure of herbicide-detoxifying maize glutathione S-transferase-I in complex with lactoylglutathione: evidence for an induced-fit mechanism. J Mol Biol 274: 446-453 DOI ScienceOn |
31 | Soranzo N, Sari Gorla M, Mizzi L, De Toma G and Frova C (2004) Organization and structural evolution of the rice glutathione S-transferase gene family. Mol Gen Genomics 271: 511-521 DOI ScienceOn |
32 | Yang T-J, Kim J-S, Lim K-B, Kwon S-J, Kim J-A, Jin M, Park JY, Lim M-H, Kim H-I, Kim SH, Lim YP and Park B-S (2005) The Korea Brassica Genome Project: a glimpse of the Brassica genome based on comparative genome analysis with Arabidopsis. Comp Funct Genomics 6: 138-146 DOI ScienceOn |
33 | Farkas M, Berry JO and Aga DS (2007) Chlortetracycline detoxification in maize via induction of glutathione S-transferases after antibiotic stress. Environ Sci Technol 15: 1450-1456 |
34 | Edwards R, Dixon DP and Walbot V (2000) Plant glutathione S-transferases: enzymes with multiple functions in sickness and in health. Trends Plant Sci 5: 193-198 DOI ScienceOn |
35 | Chen WQ, Chao G and Singh KB (1996) The promoter of a -inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding sites. Plant J 10: 955-966 DOI ScienceOn |
36 | Cho H-Y, Lee HJ and Kong K-H (2007) A Phi class glutathione S-transferase from Oryza sativa (OsGSTF5): molecular cloning, expression and biochemical characteristics. J Biochem Mol Biol 40: 511-516 DOI |
37 | DeRidder BP and Goldsbrough PB (2006) Organ-specific expression of glutathione S-transferases and the efficacy of herbicide safeners in Arabidopsis. Plant Physiol 140: 167-175 |
38 | Burge CB and Karlin S (1997) Prediction of complete gene structure in human genomic DNA. J Mol Biol 268: 78-94 DOI ScienceOn |
39 | Frova C (2003) The plant glutathione transferase gene family: genomic structure, functions, expression and evolution. Physiol Plant 46: 469-479 |
40 | Wagner U, Edwards R, Dixon DP and Mauch F (2002) Probing the diversity of the Arabidopsis glutathione S-transferase gene family. Plant Mol Biol 49: 515-532 DOI ScienceOn |