Browse > Article
http://dx.doi.org/10.5352/JLS.2011.21.9.1329

mtDNA Diversity and Phylogenetic Analysis of Korean Native Goats  

Kim, Jae-Hwan (National Institute of Animal Science, R.D.A.)
Cho, Chang-Yeon (National Institute of Animal Science, R.D.A.)
Choi, Seong-Bok (National Institute of Animal Science, R.D.A.)
Cho, Young-Moo (National Institute of Animal Science, R.D.A.)
Yeon, Seung-Hum (National Institute of Animal Science, R.D.A.)
Yang, Boh-Suk (National Institute of Animal Science, R.D.A.)
Publication Information
Journal of Life Science / v.21, no.9, 2011 , pp. 1329-1335 More about this Journal
Abstract
Korean native goats, which are characterized by black coat color, have existed on the Korean peninsula for a long time. Until now, there has been no comprehensive investigation concerning their genetic diversity, phylogenetic analysis or origin. In this study, we investigated the genetic diversity and verified phylogenetic status of the Korean native goat using the 453-bp fragment of the hypervariable fragment I (HVI) of mitochondrial DNA (mtDNA) D-loop region from 60 individuals among 5 populations. The Korean native goat showed less haplotype diversity when compared with goats from other countries. In addition, 6 haplotypes that had not been previously reported were verified in this study. In phylogenetic analyses with other country's goats, 10 haplotypes from Korean native goats were classified into mtDNA lineage A. Moreover, in a phylogenetic tree for goats which contained mtDNA lineage A, 8 of 10 haplotypes could be included in a subgroup with goats from Vietnam and an area of China. However, none of the remaining haplotypes belonged to a major group of Korean native goats and were located on different independent positions. These results suggest that almost Korean native goats aligned more closely to China and Vietnam breeds in mtDNA lineage A and there was no gene flow from other mtDNA lineages. Our results will contribute to conservation strategies and genetic breeding of Korean native goats.
Keywords
Korean native goats; phylogenetic analysis; mtDNA; haplotype; lineage;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
연도 인용수 순위
1 Sultana, S., H. Mannen, and S. Tsuji. 2003. Mitochondrial DNA diversity of Pakistani goats. Anim. Genet. 34, 417-421.   DOI
2 Swofford, D. L. 2003. PAUP*. Phylogenetic analysis using parsimony (*and other methods), Version 4. Sinauer Associates.
3 Thompson, J. D., D. G. Higgins, and T. I. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22, 4673-4680.   DOI
4 Troy, C. S., D. E. MacHugh, J. F. Bailey, D. A. Magee, R. T. Loftus, P. Cunningham, A. T. Chamberlain, B. C. Sykes, and D. G. Bradley. 2001. Genetic evidence for Near-Eastern origins of European cattle. Nature 410, 1088-1091.   DOI
5 Vila, C., J. A. Leonard, A. Götherstrom, S. Marklund, K. Sandberg, K. Liden, R. K. Wayne, and H. Ellegern. 2001. Widespread origins of domestic horse lineages. Science 291, 474-477.   DOI
6 Zeder, M. A. and B. Hesse. 2000. The initial domestication of goats (Capra hircus) in the Zagros Mountain 10,000 years ago. Science 287, 2254-2257.   DOI   ScienceOn
7 Naderi, S., H. R. Rezaei, P. Taberlet, S. Zundel, S. A. Rafat, H. R. Naghash, M. A. A. El-Barody, O. Ertugrul, and F. Pompanon. 2007. Large-scale mitochondrial DNA analysis of the domestic goat reveals six haplogroups with high diversity. PLoS ONE 10, e1012.
8 Nylander, J. A. A. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University. (http://darwin.uvigo.es/software/modeltest.html)
9 Pereira, F., L. Pereira, B. Van Asch, D. Bradley, and A. Amorim. 2005. The mtDNA catalogue of all Portuguese autochthonous goat (Capra hircus) breeds: high diversity of female lineages at the western fringe of European distribution. Mol. Ecol. 14, 2313-2318.   DOI
10 Odahara, S., H. J. Chung, S. H. Choi, S. L. Yu, S. Sasazaki, H. Mannen, C. S. Park, and J. H. Lee. 2005. Mitochondrial DNA diversity of Korean native goats. J. Anim. Science 19, 482-485.   과학기술학회마을   DOI
11 Porter, V. 1996. Goats of the world. Farming Press, Ipswich, UK.
12 Posada, D. and K. A. Crandall. 2001. Selecting the best-fit model of nucleotide substitution. Syst. Biol. 50, 580-601.   DOI
13 Pringle, H. 1998. Neolithic agriculture: reading the signs of ancient animal domestication. Science 282, 1448.   DOI
14 Ronquist, F. and J. P. Huelsenbeck. 2003. Mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.   DOI
15 Sardina, M. T., M. Ballester, J. Marmi, R. Finocchiaro, and J. B. van Kaam. 2006. Phylogenetic analysis of Sicilian goats reveals a new mtDNA lineage. Anim. Genet. 34, 376-378.
16 Savolainen, P., Y. P. Zhang, J. Luo, J. Lundeberg, and T. Leitner. 2002. Genetic evidence for an East Asian origin of domestic dogs. Science 298, 1610-1613.   DOI
17 Hiendleder, S., B. Kaupe, R. Wassmuth, and A. Janke. 2002. Molecular analysis of wild and domestic sheep questions current nomenclature and provides evidence for domestication from two different subspecies. Proc. R. Soc. Lond. B 269, 893-904.   DOI
18 Hasegawa, M., K. Kishino, and T. Yano. 1985. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22, 160-174.   DOI
19 Kim, Y. K., J. W. Lee, S. H. Choi, S. K. Son, K. J. Na, S. J. Moon, and J. H. Kim. 2002. Parameter estimates for genetic effects on growth traits of Korean native goats. J. Anim. Sci. Technol. 44, 171-180.   과학기술학회마을   DOI
20 Joshi, M. B., P. K. Rout, A. K. Mandal, C. Tyler-Smith, L. Singh, and K. Thangaraj. 2004. Phylogeography and origin of Indian domestic goats. Mol. Biol. Evol. 21, 454-462.
21 Luikart, G., L. Giellly, L. Excoffier, J. D. Vigne, J. Bouuvet, and P. Taberlet. 2001. Multiple maternal origins and weak phylogeographic structure in domestic goats. Proc. Natl. Acad. Sci. USA 98, 5927-5932.   DOI
22 MacHugh, D. E. and D. G. Bradley. 2001. Livestock genetic origins: goats buck the trend. Proc. Natl. Acad. Sci. USA 98, 5382-5384.   DOI   ScienceOn
23 Mannen, H., Y. Nagata, and S. Tsuji. 2001. Mitochondrial DNA reveal that domestic goat (Capra hircus) are genetically affected by two subspecies of bezoar (Capra aegagurus). Biochem. Genet. 39, 145-154.   DOI
24 Martin-Burríel, I, C. Rodellar, J. A. Lenstra, A. Sanz, C. Cons, R. Osta, M. Reta, S. D. Argüello, A. Sanz, and P. Zaragoza. 2007. Genetic diversity and relationships of endangered Spanish cattle breeds. J. Hered. 98, 687-691.   DOI   ScienceOn
25 Meadow, R. H. 1993. Animal domestication in the Middle East: a revised view from the eastern margin. In Possehl, G. L. (ed.), pp. 259-320, Harappan Civilization. Oxford and IBH, New Delhi.
26 Amills, M., J. Capote, A. Tomas, L. Kelly, G. Obexer-Ruff, A. Angiolillo, and A. Sanchez. 2004. Strong phylogeographic relationships among three goat breeds from the Canary Islands. J. Dairy Res. 71, 257-262.   DOI
27 Bjornstad, G., N. O. Nilsen, and K. H. Roed. 2003. Genetic relationship between Mongolian and Norwegian horses?. Anim. Genet. 34, 55-58.   DOI
28 Azor, P. J., L. V. Monteagudo, M. Leque, M. T. Tejedor, E. Rodero, I. Sierra, M. Herrera, A. Rodero, and M. V. Arruge. 2005. Phylogenetic relationships among spanish goats breeds. Anim. Genet. 35, 423-425.
29 Beja-Pereira, A., P. R. England, N. Ferrand, S. Jordan, A. O. Bakhiet, M. A. Abdalla, M. Mashkour, J. Jordana, P. Taberlet, and G. Luikart. 2004. African origins of the domestic donkey. Science 304, 1781.   DOI
30 Birren, B., E. D. Green, S. Klapholz, R. M. Myers, and J. Roskams. 1997. Genome analysis: A Laboratory Manual (USA: Cold Spring Harbor Laboratory Press).
31 Chang, W. H., H. P. Chu, Y. N. Jiang, S. H. Li, Y. Wnag, C. H. Chen, K. J. Chen, C. Y. Lin, and Y. T. Ju. 2009. Genetic variation and phylogenetic of Lanyu and exotic pig breeds in Taiwan analyzed by nineteen microsatellite markers. J. Anim. Sci. 87, 1-8.   DOI
32 Chen, S. Y., Y. H. Su, S. F. Wu, T. Sha, and Y. P. Zhang. 2005. Mitochondrial diversity and phylogeographic structure of Chinese domestic goats. Mol. Phylogenet. Evol. 37, 804-814.   DOI
33 Fernandez, H., S. Hughes, J. D. Vigne, D. Helmer, G. Hodgins, C. Miqual, C. Hänni, G. Luikart, and P. Taberlet. 2006. Divergent mtDNA lineages of goats in an Early Neolithic site, far from the initial domestication areas. Proc. Natl. Acad. Sci. USA 103, 15375-15379.   DOI