1 |
Crooijmans, R. P., J. Vrebalov, R. J. Dijkhof, J. J. van der Poel, and M. A. Groenen. 2000. Two-dimensional screening of the Wageningen chicken BAC library. Mamm. Genome 1, 360-363
|
2 |
Davoli, R. and S. Braglia. 2008. Molecular approaches in pig breeding to improve meat quality, pp. 37, Brief Funct. Genomic Proteomics
|
3 |
Fahrenkrug, S. C., G. A. Rohrer, B. A. Freking, T. P. Smith, K. Osoegawa, C. L. Shu, J. J. Catanese and P. J. de Jong. 2001. A porcine BAC library with tenfold genome coverage: a resource for physical and genetic map integration. Mamm. Genome 12, 472-474
DOI
ScienceOn
|
4 |
Fries, R., R. Hediger and G. Stranzinger. 1986. Tentative chromosomal localization of the bovine major histocompatibililty complex by in situ hybridization. Anim. Genet. 17, 287-294
DOI
|
5 |
Fries, R., A. Eggen and J. E. Womack. 1993. The bovine genome map. Mamm. Genome 4, 405-428
DOI
ScienceOn
|
6 |
Bumstead, N. and J. Palyga. 1992. A preliminary linkage map of the chicken genome. Genomics 13, 690-697
DOI
|
7 |
Pitel, F., B. Abasht, M. Morisson, R. P. Crooijmans, F. Vignoles, S. Leroux, K. Feve, S. Bardes, D. Milan, S. Lagarrigue, M. A. Groenen, M. Douaire and A. Vignal. 2004. A high-resolution radiation hybrid map of chicken chromosome 5 and comparison with human chromosomes. BMC Genomics 5, 66
DOI
ScienceOn
|
8 |
Savolainen, P., C. Fitzsimmons, L. Arvestad, L. Andersson and J. Lundeberg. 2005. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Cytogenet Genome Res. 111, 79-87
DOI
ScienceOn
|
9 |
Takasuga, A., S. Hirotsune, R. Itoh, A. Jitohzono, H. Suzuki, H. Aso and Y. Sugimoto. 2001. Establishment of a high throughput EST sequencing system using poly (A) tail-removed cDNA libraries and determination of 36,000 bovine ESTs. Nucleic Acids Res. 29, E108
DOI
ScienceOn
|
10 |
Tirunagaru, V. G., L. Sofer, J. Cui and J. Burnside. 2000. An expressed sequence tag database of T-cell-enriched activated chicken splenocytes: sequence analysis of 5251 clones. Genomics 66, 144-151
DOI
ScienceOn
|
11 |
Rebeiz, M. and H. A. Lewin. 2000. Compass of 47,787 cattle ESTs. Anim Biotechnol. 11, 75-241
DOI
ScienceOn
|
12 |
Rohrer, G. A., P. Vogeli, G. Stranzinger, L.J. Alexander and C.W. Beattie. 1997. Mapping 28 erythrocyte antigen, plasma protein and enzyme polymorphisms using an efficient genomic scan of the porcine genome. Anim. Genet. 28, 323-330
DOI
ScienceOn
|
13 |
Smith, E. J., L. Shi, P. Drummond, L. Rodriguez, R. Hamilton, S. Ramlal, G. Smith, K. Pierce and J. Foster. 2001. Expressed sequence tags for the chicken genome from a normalized 10-day-old White Leghorn whole embryo cDNA library: 1. DNA sequence characterization and linkage analysis. J. Hered. 92, 1-8
DOI
ScienceOn
|
14 |
Burt, D. W. 2004. Chicken genomics charts a path to the genome sequence. Brief Funct. Genomic Proteomic. 3, 60-67
DOI
ScienceOn
|
15 |
Groenen, M. A., R. P. Crooijmans, A. Veenendaal, H. H. Cheng, M. Siwek and J. J. Van der Poel. 1998. A comprehensive microsatellite linkage map of the chicken genome. Genomics 49, 265-274
DOI
ScienceOn
|
16 |
Levin, I., L. B. Crittenden and J. B. Dodgsen. 1993. Genetic map of the chicken Z chromosome using random amplified polymorphic DNA (RAPD) markers. Genomics 16, 224-230
DOI
ScienceOn
|
17 |
Rohrer, G. A., L. J. Alexander and Z. L. Hu. 1996. A comprehensive map of the porcine genome. Genome Research 6, 371-391
DOI
ScienceOn
|
18 |
, A. K., M. Fredholm and W. Davies. 1996. Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. Mamm. Genome 7, 509-517
DOI
ScienceOn
|
19 |
Rogel-Gaillard, C., N. Bourgeaux, A. Billault, M. Vaiman and P. Chardon. 1999. Construction of a swine BAC library: application to the characterization and mapping of porcine type C endoviral elements. Cytogenet Cell Genet. 85, 205-211
DOI
ScienceOn
|
20 |
Rink, A., E. M. Santschi, K. M. Eyer, B. Roelofs, M. Hess, M. Godfrey, E. K. Karajusuf, M. Yerle, D. Milan and C. W. Beattie. 2002. A first-generation EST RH comparative map of the porcine and human genome. Mamm. Genome 13, 578-587
DOI
ScienceOn
|
21 |
Rothschild, M. F., Z. L. Hu and Z. Jiang. 2007. Advances in QTL mapping in pigs. Int. J. Biol. Sci. 3, 192-197
|
22 |
van Kaam, J. B., M. A. Groenen, H. Bovenhuis, A. Veenendaal, A. L. Vereijken and J. A. van Arendonk. 1999. Whole genome scan in chickens for quantitative trait loci affecting growth and feed efficiency. Poult Sci. 78, 15-23
DOI
|
23 |
Weikard, R., C. Kuhn, T. Goldammer, G. Freyer and M. Schwerin. 2005. The bovine PPARGC1A gene: molecular characterization and association of an SNP with variation of milk fat synthesis. Physiol Genomics 21, 1-13
DOI
ScienceOn
|
24 |
Wernersson, R., M. H. Schierup, F. G. Jorgensen, J. Gorodkin, F. Panitz, H. H. Staerfeldt, O. F. Christensen, T. Mailund, H. Hornshoj, A. Klein, J. Wang, B. Liu, S. Hu, W. Dong, W. Li, G. K. Wong, J. Yu, J. Wang, C. Bendixen, M. Fredholm, S. Brunak, H. Yang and L. Bolund. 2005. Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics 10, 6-70
|
25 |
Schook, L. B., J. E. Beever, J. Rogers, S. Humphray, A. Archibald, P. Chardon, D. Milan, G. Rohrer and K. Eversole. Swine genome sequencing consortium (SGSC): A strategic roadmap for sequencing the pig genome. Comparative and Functional Genomics 6, 251-255
DOI
ScienceOn
|
26 |
Snelling, W. M., E. Casas, R. T. Stone, J. W. Keele, G. P. Harhay, G. L. Bennett, T. P. Smith. 2005. Linkage mapping bovine EST-based SNP. BMC Genomics 6, 74
DOI
ScienceOn
|
27 |
Schnabel, R. D., J. J. Kim, M. S. Ashwell, T. S. Sonstegard, C. P. Van Tassell, E. E. Connor and J. F. Taylor. 2005. Fine-mapping milk production quantitative trait loci on BTA6: analysis of the bovine osteopontin gene. Proc. Natl. Acad. Sci. USA 102, 6896-6901
DOI
ScienceOn
|
28 |
Shin, J. H., H. Kim, K. D. Song, B. K Han, T. S. Park, D. K. Kim and J. Y. Han. 2005. A set of testis-specific novel genes collected from a collection of Korean Native Chicken ESTs. Anim. Genet. 36, 346-348
DOI
ScienceOn
|
29 |
Smith, T. P., W. M. Grosse, B. A. Freking, A. J. Roberts, R. T. Stone, E. Casas, J. E. Wray, J. White, J. Cho, S. C. Fahrenkrug, G. L. Bennett, M. P. Heaton, W. W. Laegreid, G. A. Rohrer, C. G. Chitko-McKown, G. Pertea, I. Holt, S. Karamycheva, F. Liang, J. Quackenbush and J. W. Keele. 2001. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Genome Res. 11, 626-630
DOI
ScienceOn
|
30 |
Williams, J. L., A. Eggen, L. Ferretti, C. J. Farr, M. Gautier, M., G. Amati, G. Ball, T. Caramorr, R. Critcher and S. Costa. 2002. A bovine whole-genome radiation hybrid panel and outline map. Mamm. Genome 13, 469-474
DOI
ScienceOn
|
31 |
Womack, J. E. and Y. D. Moll. 1986. Gene map of the cow: Conservation of linkage with mouse and man. J. Hered. 77, 2-7
DOI
|
32 |
Womack, J. E., J. S. Johnson, E. K. Owens, C. E. Rexroad III, J. Schlapfer and Y. P. Yang. 1997. A whole-genome radiation hybrid panel for bovine gene mapping. Mamm. Genome 8, 54-856
|
33 |
Yerle, M., P. Pinton, C. Delcros, N. Arnal, D. Milan and A. Robic. 2002. Generation and characterization of a 12,000-rad radiation hybrid panel for fine mapping in pig. Cytogenet Genome Res. 97, 219-228
DOI
ScienceOn
|
34 |
Tuggle, C. K. and C. B. Schmitz. 1994. Cloning and characterization of pig muscle cDNAs by an expressed sequence tag approach. Animal Biotechnology. 5, 1-13
|
35 |
Yonash, N., L. D. Bacon, R. L. Witter and H. H. Cheng. 1999. High resolution mapping and identification of new quantitative trait loci (QTL) affecting susceptibility to Marek's disease. Animal Genetics 30, 126-135
DOI
ScienceOn
|
36 |
Tiersch, T. R. and S. S. Wachtel. 1991. On the evolution of genome size in birds. J. Hered. 82, 363-368
DOI
|
37 |
Tosser-Klopp, G., F. Benne, A. Bonnet, P. Mulsant, F. Gasser and F. A. Hatey. 1997. First catalog of genes involved in pig ovarian follicular differentiation. Mamm. Genome 8, 250-254
DOI
ScienceOn
|
38 |
Tuggle, C. K., Y. Wang and O. Couture. Advances in Swine Transcriptomics. 2007. Int. J. Biol. Sci. 3, 132-152
|
39 |
Vallejo, R. L., L. D. Bacon, H. C. Liu, R. L. Witter, M. A. Groenen, J. Hillel and H. H. Cheng. 1998. Genetic mapping of quantitative trait loci affecting susceptibility to Marek's disease virus induced tumors in F2 intercross chickens. Genetics 148, 349-360
|
40 |
Morisson, M., S. Leroux, C. Jiguet-Jiglaire, S. Assaf, F. Pitel, S. Lagarrigue, S. Bardes, K. Feve, T. Faraut, D. Milan and A. Vignal. 2005. A gene-based radiation hybrid map of chicken microchromosome 14: comparison to human and alignment to the assembled chicken sequence. Genet. Sel. Evol. 37, 229-251
DOI
ScienceOn
|
41 |
Ma, R. Z., M. J. van Eijk, J. E. Beever, G. Guerin, C. L. Mummery and H. A. Lewin.1998. Comparative analysis of 82 expressed sequence tags from a cattle ovary cDNA library. Mamm. Genome 9, 545-549
DOI
ScienceOn
|
42 |
McElroy, J. P., J. C. Dekkers, J. E. Fulton, N. P. O'Sullivan, M. Soller, E. Lipkin, W. Zhang, K. J. Koehler, S. J. Lamont and H. H. Cheng. 2005. Microsatellite markers associated with resistance to Marek's disease in commercial layer chickens. Poult. Sci. 84, 1678-1688
DOI
|
43 |
Kiuchi, S., Y. Inage, H. Hiraiwa, H. Uenishi and H. Yasue. 2002. Assignment of 280 swine genomic inserts including 31 microsatellites from BAC clones to the swine RH map (IMpRH map). Mamm. Genome 13, 80-88
DOI
ScienceOn
|
44 |
Leonard, S., H. Khatib, V. Schutzkus, Y. M. Chang and C. Maltecca C. 2005. Effects of he osteopontin gene variants on milk production traits in dairy cattle. J. Dairy Sci. 88, 4083-4086
DOI
ScienceOn
|
45 |
Leroux, S., M. Dottax, S. Bardes, F. Vignoles, K. Fève, F. Pitel, M. Morisson and A. Vignal. 2005. Construction of a radiation hybrid map of chicken chromosome 2 and alignment to the chicken draft sequence. BMC Genomics 4, 6-12
|
46 |
Levin, I., L. Santagelo, H. H. Cheng, L. B. Crittenden and J. B. Dodgsen. 1994. An autosomal genetic linkage map of the chicken. J. Hered. 85, 79-85
DOI
|
47 |
Knorr, C., H. H. Cheng and J. B. Dodgson. 1999. Application of AFLP markers to genome mapping in poultry. Anim. Genet. 30, 28-35
DOI
ScienceOn
|
48 |
Lee, M. K., C. W. Ren, B. Yan, B. Cox, H. B. Zhang, M. N. Romanov, F. G. Sizemore, S. P. Suchyta, E. Peters and J. B. Dodgson. 2003. Construction and characterization of three BAC libraries for analysis of the chicken genome. Anim. Genet. 34, 151-152
DOI
ScienceOn
|
49 |
Green, R. D., M. A. Qureshi, J. A. Long, P. J. Burfening and D. L. Hamernik. 2007. Identifying the future needs for long-term USDA efforts in agricultural animal genomics. Int. J. Biol. Sci. 3, 185-189
|
50 |
Groenen, M. A., R. P. Crooijmans, R. J. Dijkhof, R. Acar and J. J. van der Poel. 1999. Extending the chicken-human comparative map by placing 15 genes on the chicken linkage map. Anim. Genet. 30, 418-422
DOI
ScienceOn
|
51 |
Groenen, M. A. and R. P. Crooijmans. 2003. Structural genomics: integrating linkage, physical and sequence maps, pp. 497-536, In Muir, W. M. and S. E. Aggrey (eds.), Poultry Breeding and Biotechnology, Vol. 497, CABI International
|
52 |
Morisson, M., A. Lemiere, S. Bosc, M. Galan, F. Plisson- Petit, P. Pinton, C. Delcros, K. Feve, F. Pitel, V. Fillon, M. Yerle and A. Vignal. 2002. ChickRH6: a chicken whole-genome radiation hybrid panel. Genet. Sel. Evol. 4, 521-533
|
53 |
Meidtner, K., A. K. Wermter, A. Hinney, H. Remschmidt, J. Hebebrand and R. Fries. 2006. Association of the melanocortin 4 receptor with feed intake and daily gain in F2 Mangalitsa Pietrain pigs. Anim. Genet. 37, 245-247
DOI
ScienceOn
|
54 |
Min, W., H. S. Lillehoj, C. M. Ashwell, C. P. van Tassell, R. A. Dalloul, L. K. Matukumalli, J. Y. Han and E. P. Lillehoj. 2005. Expressed sequence tag analysis of Eimeria-stimulated intestinal intraepithelial lymphocytes in chickens. Mol. Biotechnol. 30, 143-150
DOI
ScienceOn
|
55 |
McElroy, J. P., J. C. Dekkers, J. E. Fulton, N. P. O'Sullivan, M. Soller, E. Lipkin, W. Zhang, K. J. Koehler, S. J. Lamont and H. H. Cheng. 2005. Microsatellite markers associated with resistance to Marek's disease in commercial layer chickens. Poult. Sci. 84, 1678-1688
DOI
|
56 |
Morisson, M., C. Jiguet-Jiglaire, S. Leroux, T. Faraut, S. Bardes, K. Feve, C. Genet, F. Pitel, D. Milan and A. Vignal. 2004. Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse. Mamm. Genome. 15, 732-739
DOI
ScienceOn
|
57 |
Houston, R. D., N. D. Cameron and K. A. Rance. 2004. A melanocortin-4 receptor (MC4R) polymorphism is associated with performance traits in divergently selected Large White pig populations. Anim. Genet. 35, 386-390
DOI
ScienceOn
|
58 |
Herbergs, J., M. Siwek, R. P. Crooijmans J. J. van der Poel and M. A. Groenen. 1999. Multicolour fluorescent detection and mapping of AFLP markers in chicken (Gallus domesticus). Anim. Genet. 30, 274-285
DOI
ScienceOn
|
59 |
Hughes, A. L. and M. K. Hughes. 1995. Small genomes for better flyers. Nature 377, 391
|
60 |
Hubbard, S. J., D. V. Grafham, K. J. Beattie, I. M. Overton, S. R. McLaren, M. D. Croning, P. E. Boardman, J. K. Bonfield, J. Burnside, R. M. Davies, E. R. Farrell, M. D. Francis, S. Griffiths-Jones, S. J. Humphray, C. Hyland, C. E. Scott, H. Tang, R. G. Taylor, C. Tickle, W. R. Brown, E. Birney, J. Rogers and S. A. Wilson. 2005. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Genome Res. 15, 174-183
DOI
ScienceOn
|
61 |
Hutt, F. B. 1936. Genetics of the fowl VI. A tentative chromosome map. pp. 105-112, Neue Forschungen in Tierzucht und Abstammungslehre (Duerst Festschrift)
|
62 |
Ihara, N., A., Takasuga, K. Mizoshita, H. Takeda, M. Sugimoto, Y. Mizoguchi, T. Hirano, T. Itoh, T. Watanabe, K. M. Reed, W. M. Snelling, S. M. Kappes, C. W. Beattie, G. L. Bennett and Y. Sugimoto. 2004. A comprehensive genetic map of the cattle genome based on 3802 microsatellites. Genome Res. 14, 1987-1998
DOI
ScienceOn
|
63 |
International Chicken Genome Sequencing Consortium. 2004. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432, 695-716
DOI
ScienceOn
|
64 |
Gibbs, M., D. Dawson, C. Mc Camley and T. Burke. 1995. Ten novel chicken dinucleotide repeat polymorphisms. Anim. Genet. 26, 443-444
DOI
ScienceOn
|
65 |
Gallagher Jr. D. S., D. Threadgill, A. M. Ryan, J. E. Womack and D. M. Irwin. 1993. Physical mapping of the lysozyme gene family in cattle. Mamm. Genome 4, 386-373
|
66 |
Abdrakhmanov, I., D. Lodygin , P. Geroth, H. Arakawa, A. Law, J. Plachy, B. Korn and J. M. Buerstedde. 2000. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Genome Res. 10, 2062-2069
DOI
ScienceOn
|
67 |
Kappes, S. M., J. W. Keele, R. T. Stone, R. A. McGraw, T. S. Sonstegard, T. P. Smith, N. L. Lopez-Corrales and C. W. Beattie. 1997. A second-generation linkage map of the bovine genome. Genome Res. 7, 235-249
DOI
ScienceOn
|
68 |
Anderson, S. I., N. L. Lopez-Corrales, B. Gorick and A. L. Archibald. 2000. A large-fragment porcine genomic library resource in a BAC vector. Mamm. Genome 11, 811-814
DOI
ScienceOn
|
69 |
Appels, R., M. Francki, M. Cakir and M. Bellgard. 2004. Looking through genomics: concepts and technologies for plant and animal genomics Funct. Integr. Genomics 4, 7-13
|
70 |
Itoh, T., T. Watanabe, N. Ihara, P. Mariani, C. W. Beattie, Y. Sugimoto and A. Takasuga. 2005. A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci. Genomics 85, 413-424
DOI
ScienceOn
|
71 |
Kim, K. S., N. Larsen, T. Short, G. Plastow and M. F. Rothschild. 2000. A missense variant of the porcine melanocortin- 4 receptor (MC4R) gene is associated with fatness, growth, and feed intake traits. Mamm. Genome 11, 131-135
DOI
ScienceOn
|
72 |
Hawken, R. J., J. Murtaugh, G. H. Flickinger, M. Yerle, A. Robic, D. Milan, J. Gellin, C. W. Beattie, L. B. Schook and L. J. Alexander. 1999. A first-generation porcine whole-genome radiation hybrid map. Mamm. Genome 10, 824-830
DOI
ScienceOn
|
73 |
Hasler-Rapacz, J., H. Ellegren, A. K. Fridolfsson, B. Kirkpatrick, S. Kirk, L. Andersson and J. Rapacz. 1998. Identification of a mutation in the low density lipoprotein receptor gene associated with recessive familial hypercholesterolemia in swine. Am. J. Med. Genet. 76, 379-386
DOI
ScienceOn
|
74 |
Chen, K., T. Baxter, W. M. Muir, M. A. Groenen and L. B. Schook. 2007. Genetic resources, genome mapping and evolutionary genomics of the pig (Sus scrofa). Int. J. Biol. Sci. 3, 153-165
DOI
|
75 |
Barendse, W., D. Vaiman, S. J. Kemp, Y. Sugimoto, S. M. Armitage, J. L. Williams, H. S. Sun, A. Eggen, M. Agaba, S. A. Aleyasin, M. Band, M. D. Bishop, J. Buitkamp, K. Byrne, F. Collins, L. Cooper, W. Coppettiers, B. Denys, R. D. Drinkwater, K. Easterday, C. Elduque , S. Ennis, G. Erhardt and L. Li. 1997. A medium-density genetic linkage map of the bovine genome. Mamm. Genome 8, 21
DOI
ScienceOn
|
76 |
Cheng, H., H. I. Levin, R. L. Vallejo, H. Khatib, J. B. Dodgson, L. B. Crittenden and J. Hillel. 1995. Development of a genetic map of the chicken with markers of high utility. Poult. Sci. 74, 1855-1874
DOI
ScienceOn
|
77 |
Coppieters, W., J. Riquet, J. J. Arranz, P. Berzi, N. Cambisano, B. Grisart, L. Karim, F. Marcq, L. Moreau, C. Nezer, P. Simon, P. Vanmanshoven, D. Wagenaar and M. Georges. 1998. A QTL with major effect on milk yield and composition maps to bovine chromosome 14. Mamm. Genome 9, 540-544
DOI
ScienceOn
|
78 |
Band, M. R., J. H. Larson, M. Rebeiz, C. A. Green, D. W. Heyen, J. Donovan, R. Windish, C. Steining, P. Mahyuddin and J. E. Womack. 2000. An ordered comparative map of the cattle and human genomes. Genome Res. 10, 1359-1368
DOI
ScienceOn
|
79 |
Boardman, P. E., J. Sanz-Ezquerro, I. M. Overton, D. W. Burt, E. Bosch, W. T. Fong, C. Tickle, W. R. Brown, S. A. Wilson and S. J. Hubbard. 2002. A comprehensive collection of chicken cDNAs. Curr. Biol. 12, 1965-1969
DOI
ScienceOn
|
80 |
Archibald, A. L., C. S. Haley, J. F. Brown, S. Couperwhite, H. A. McQueen, D. Nicholson, W. Coppieters, A. Van de Weghe, A. Stratil, A. K. Wintero. 1995. The PiGMaP consortium linkage map of the pig (Sus scrofa). Mamm Genome 6, 157-175
DOI
ScienceOn
|