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http://dx.doi.org/10.5352/JLS.2008.18.10.1442

Genetic Relationship between Populations and Analysis of Genetic Structure in Hanwoo Proven and Regional Area Populations  

Oh, Jae-Don (Poulrty Science Division, National Institute of Animal Science, RDA)
Jeon, Gwang-Joo (Genomic Informatics Center, Hankyong National University)
Lee, Hak-Kyo (Genomic Informatics Center, Hankyong National University)
Cho, Byung-Wook (School of Bio-Resources and PNU-special Animal Biotechnology Center, Pusan National University)
Lee, Mi-Rang (School of Bio-Resources and PNU-special Animal Biotechnology Center, Pusan National University)
Kon, Hong-Sik (Genomic Informatics Center, Hankyong National University)
Publication Information
Journal of Life Science / v.18, no.10, 2008 , pp. 1442-1446 More about this Journal
Abstract
Seven populations of 586 Hanwoo have been characterized by using 10 microsatellite DNA markers. Size of microsatellite markers decided using GeneMapper Software (v.4.0) after analyze in kinds of ABI machine of name of 3130. Frequencies of microsatellites markers were used to estimate heterozygosities and genetic distances. Genetic distancesbetween populations were obtained using Ne's DA distance method. Expected heterozygosity between each population was estimated very analogously. Genetic distances (0.0413) between Kangwan (KW) and Gyonggi (GG), Jeonpuk (JP) were nearest than distances between other populations by 0.021. Genetic distances between Gyonggi (GG) and Kyongpuk (KP) showed far distance than other populations by 0.032. In the UPGMA tree that is made based on DA distance matrix. Each individuals were not ramified to different group and were spread evenly in phylogenetic dendrogram about all Hanwoo of each regional area populations. But Hanwoo proven population was ramified to different group.
Keywords
Hanwoo; genetic relationship; microsatellite marker;
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  • Reference
1 Ota, T. 1993. DINPAN. Pennsylvania State University, PA. USA.
2 Park, S. D. E. 2000. Microsatellite Toolkit For MS Excel 97 or 2000. (in personnel communication).
3 Han, S. K., H. S. Yoon, E. Y. Chung, Y. C. Shin and H. D. Byun. 1995. Studies on serum and red cell protein polymorphisms for conservation of Korean native cattle. Korean J. Anim. Sci. 37, 43-51.
4 Lee, C. and E. J. Pollak. 2002. Genetic antagonism between body weight and milk production in beef cattle. J. Anim. Sci. 80, 316-321.   DOI
5 Kim, K. S., J. H. Eum and C. B. Choi. 2001. Genetic diversity of Korean cattle using microsatellite analysis. J. Anim. Sci. 43, 599-608.
6 Mannen, H., S. Tsuji, F. Mukai, N. Goto and S. Ohtagaki. 1993. Genetic similarity using DNA fingerprinting in cattle to determine relationship coefficient. J Hered. May-Jun. 84, 166-169.   DOI
7 Nei, M., F. Taima and Y. Tateno. 1983. Accuracy of estimated phylogenetic trees from molecular data. J. Mol. Evol. 19, 153-170.   DOI
8 Martin-Burriel, I., E. Garcia-Muro and P. Zaragoza. 1999. Genetic diversity analysis of six Spanish native cattle breeds using microsatellites. Anim. Genet. 30, 177-182.   DOI   ScienceOn
9 Li, K., Y. Chen, C. Moran, B. Fan, S. Zhao and Z. Peng. 2000. Analysis of diversity and genetic relationships between four Chinese indigenous pig breeds and one Australian commercial pig breed. Anim. Genet. 31, 322-325.   DOI   ScienceOn
10 Saitou, N. and M. Nei. 1987. The neighborjoining method: A new method for reconstruction phylogenetic tree. Mol. Biol. 4, 406-425.
11 Peelman, L, J., F. Mortiaux, A. Van Zeveren, A. Dansercoer, G. Mommens, F. Coopman, Y. Bouquet, A. Burny, R. Renaville and D. Portetelle. 1998. Evaluation of the genetic variability of 23 bovine microsatellite markers in four Belgian cattle breeds. Anim Genet. Jun. 29, 161-167.   DOI   ScienceOn
12 Barker, J. S. F., S. G. Tan, O. S. Selvaraj and T. K. Mukherjee. 1997. Genetic variation within and relationships among populations of Asian water buffalo (Bubalus bubalis). Anim. Genet. 28, 1-13.   DOI   ScienceOn
13 Arranz, J. J., Y. Bayon and F. San Primitivo. 1996. Comparison of protein markers and microsatellites in differentiation of cattle populations. Anim. Genet. 27, 415-419.   DOI   ScienceOn
14 Blott, S. C., J. L. Williams and C. S. Haley. 1999. Discriminating among cattle breeds using genetic markers. Heredity. 82, 613-619.   DOI   ScienceOn
15 Bjornstad, G., N. O. Nilsen and K. H. Roed. 2003. Genetic relationship between Mongolian and Norwegian horses ? Anim. Genet. 34, 55-58.   DOI   ScienceOn
16 Botstein, D., R. L. White, M. Skolnick and R. W. Davis. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J. Hum. Genet. 32, 314-331.
17 Chung, E. R., W. T. Kim, Y. S. Kim and S. K. Han. 2001. Genetic diversity and parentage testing of Korean cattle using VNTR markers. J. Anim. Sci. 43, 35-44.
18 Shin, W. J., X. J. Shen, Z. Y. Zheng, J. W. Kim, J. H. Lee and J. S. Yeo. 1999. Genetic characteristics for Hanwoo, Yanbian yellow cattle and Wagyu using DNA markers. Korean J. Anim. Sci. 41, 405-410.
19 Han, S. K., E. Y. Chung, K. S. Yang and Y. C. Shin. 1991. Studies on the genetic polymorphisms of milk proteins for the genetic improvement of Korean native cattle. Korean J. Anim. Sci. 33, 111-120.
20 Chung, E. R., W. T. Kim, Y. S. Kim and S. K. Han. 2000. DNA fingerprinting of Korean cattle using AFLP markers. J. Anim. Sci. 42, 35-44.
21 Sneath, P. H. A. and R. R. Sokal. 1973. Numerical Taxonomy. Freeman, San Francisco.
22 Yoon, D. H. 2002. Molecular genetic diversity and development of genetic markers in association with meat quality for Hanwoo (Korean Cattle). Graduate School, Korea Univ.
23 Shin, H. D., D. H. Lee, I. S. Yang and U. I. Shin. 1993. Studies on genetic distance between regional groups of Korean native cattle by blood protein polymorphisms. Korean J. Anim. Sci. 35, 347-353.