Detection of Apple Scar Skin Viroid by Reverse Transcription Recombinase Polymerase Amplification Assay |
Kim, Na-Kyeong
(Department of Applied Biology, Institute of Environmentally Friendly Agriculture, Chonnam National University)
Lee, Hyo-Jeong (Department of Applied Biology, Institute of Environmentally Friendly Agriculture, Chonnam National University) Ryu, Tae-Ho (Department of Applied Biology, Institute of Environmentally Friendly Agriculture, Chonnam National University) Cho, In-Sook (Horticultural and Herbal Crop Environment Division, National Institute of Horticultural and Herbal Science, Rural Development Administration) Ju, Ho-Jong (Department of Agricultural Biology, College of Agriculture & Life Sciences, Jeonbuk National University) Jeong, Rae-Dong (Department of Applied Biology, Institute of Environmentally Friendly Agriculture, Chonnam National University) |
1 | Piepenburg, O., Williams, C. H., Stemple, D. L. and Armes, N. A. 2006. DNA detection using recombination proteins. PLoS Biol. 4: e204. DOI |
2 | Kim, H. R., Lee, S. H., Lee, D. H., Kim, J. S. and Park, J. W. 2006. Transmission of apple scar skin viroid by grafting, using contaminated pruning equipment, and planting infected seeds. Plant Pathol. J. 22: 63-67. DOI |
3 | Kim, N.-Y., Lee, H.-J., Kim, N.-K., Oh, J., Lee, S.-H., Kim, H. et al. 2019. Occurrence pattern of viral infection on pear in korea and genetic characterization of apple scar skin viroid isolates. Hortic. Sci. Technol. 37: 767-778. |
4 | Lee, H.-J., Kim, H.-J., Lee, K. and Jeong, R.-D. 2020. Rapid detection of peach latent mosaic viroid by reverse transcription recombinase polymerase amplification. Mol. Cell Probes 53: 101627. DOI |
5 | Lee, S. H., Ahn, G., Kim, M.-S., Jeong, O. C., Lee, J. H., Kwon, H. G. et al. 2018. Poly-adenine-coupled LAMP barcoding to detect apple scar skin viroid. ACS Comb. Sci. 20: 472-481. DOI |
6 | Higgins, M., Ravenhall, M., Ward, D., Phelan, J., Ibrahim, A., Forrest, M. S. et al. 2019. PrimedRPA: primer design for recombinase polymerase amplification assays. Bioinformatics 35: 682-684. DOI |
7 | Khan, S., Mackay, J., Liefting, L. and Ward, L. 2015. Development of a duplex one-step RT-qPCR assay for the simultaneous detection of apple scar skin viroid and plant rna internal control. J. Virol. Methods 221: 100-105. DOI |
8 | Panno, S., Matic, S., Tiberini, A., Caruso, A. G., Bella, P., Torta, L. et al. 2020. Loop mediated isothermal amplification: principles and applications in plant virology. Plants 9: 461. DOI |
9 | Walia, Y., Kumar, Y., Rana, T., Bhardwaj, P., Ram, R., Thakur, P. D. et al. 2009. Molecular characterization and variability analysis of apple scar skin viroid in india. J. Gen. Plant Pathol. 75: 307-311. DOI |
10 | Diener, T. O. 2001. The viroid: biological oddity or evolutionary fossil? Adv. Virus Res. 57: 137-184. DOI |
11 | Hashimoto, J. and Koganezawa, H. 1987. Nucleotide sequence and secondary structure of apple scar skin viroid. Nucleic Acids Res. 15: 7045-7052. DOI |
12 | Heo, S., Kim, H. R. and Lee, H. J. 2019. Development of a quantitative real-time nucleic acid sequence based amplification (NASBA) assay for early detection of apple scar skin viroid. Plant Pathol. J. 35: 164-171. DOI |
13 | Kim, D.-H., Kim, H.-R., Heo, S., Kim, S.-H., Kim, M.-A., Shin, I.-S. et al. 2010. Occurrence of apple scar skin viroid and relative quantity analysis using real-time RT-PCR. Res. Plant Dis. 16: 247-253. (In Korean) DOI |
14 | Kumar, S., Singh, L., Ram, R., Zaidi, A. A. and Hallan, V. 2014. Simultaneous detection of major pome fruit viruses and a viroid. Indian J. Microbiol. 54: 203-210. DOI |
15 | Osaki, H., Kudo, A. and Ohtsu, Y. 1996. Japanese pear fruit dimple disease caused by apple scar skin viroid (ASSVd). Jpn. J. Phytopathol. 62: 379-385. DOI |
16 | Hadidi, A., Huang, C., Hammond, R. W. and Hashimoto, J. 1990. Homology of the agent associated with dapple apple disease to apple scar skin viroid and molecular detection of these viroids. Phytopathology 80: 263-268. DOI |
17 | Hammond, R. W. and Zhang, S. 2016. Development of a rapid diagnostic assay for the detection of tomato chlorotic dwarf viroid based on isothermal reverse-transcription-recombinase polymerase amplification. J. Virol. Methods 236: 62-67. DOI |
18 | Henson, J. M. and French, R. 1993. The polymerase chain reaction and plant disease diagnosis. Annu. Rev. Phytopathol. 31: 81-109. DOI |
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