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http://dx.doi.org/10.11110/kjpt.2018.48.2.129

New polymorphic microsatellite markers for the endangered fern Ceratopteris thalictroides (Parkeriaceae)  

CHO, Won-Bum (Department of Biology Education, Chonnam National University)
HAN, Eun-Kyeong (Department of Biology Education, Chonnam National University)
KWAK, Myounghai (Plant Resources Division, National Institute of Biological Resources)
LEE, Jung-Hyun (Department of Biology Education, Chonnam National University)
Publication Information
Korean Journal of Plant Taxonomy / v.48, no.2, 2018 , pp. 129-133 More about this Journal
Abstract
Ceratopteris thalictroides is a semi-aquatic fern with a circumtropical distribution. Because this species is designated internationally on the IUCN Red List as requiring at least some concern, Korean populations are of great concern for the species' long-term survival, as they are at the northern limit of the species distribution. To establish an effective conservation strategy for those populations at the genetic level, we used the Mi-Seq platform to develop three sets of 25 polymorphic microsatellite markers for C. thalictroides, which is endangered in Korea. In populations sampled from Busan and Gochang, the number of alleles ranged from 2 to 13 (average of 5.64), and plants presented an expected heterozygosity of 0.000 to 0.860. These markers will be useful for evaluating the genetic status and conserving Korean populations of C. thalictroides more effectively.
Keywords
Ceratopteris thalictroides; conservation; microsatellite markers;
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  • Reference
1 Kawecki, T. J. 2008. Adaptation to marginal habitats. Annual Review of Ecology, Evolution, and Systematics 39: 321-342.   DOI
2 Kearse, M., R. Moir, A. Wilson, S. Stones-Havas, M. Cheung, S. Sturrock, S. Buxton, A. Cooper, S. Markowitz, C. Duran, T. Thierer, B. Ashton, P. Meintjes and A. Drummond. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28: 1647-1649.   DOI
3 Lloyd, R. M. 1974. Systematic of the genus Ceratopteris Brongn. (Parkeriaceae) II. Taxonomy. Brittonia 26: 139-160.   DOI
4 Masuyama, S. and Y. Watano. 2005. Cryptic species in the fern Ceratopteris thalictroides (L.) Brongn. (Parkeriaceae). II. Cytological characteristics of three cryptic species. Acta Phytotaxonomica et Geobotanica 56: 231-240.
5 Miller, M. P., B. J. Knaus, T. D. Mullins and S. M. Haig. 2013. SSR_pipeline: a bioinformatic infrastructure for identifying microsatellites from paired-end Illumina high-throughput DNA sequencing data. Journal of Heredity 104: 881-885.   DOI
6 van Puyvelde, K., A. van Geert and L. Triest. 2010. ATETRA, a new software program to analyse tetraploid microsatellite data: comparison with TETRA and TETRASAT. Molecular Ecology Resources 10: 331-334.   DOI
7 Watano, Y. and S. Masuyama. 1994. Genetic differentiation in populations of the polymorphic fern Ceratopteris thalictroides in Japan. Journal of Plant Research 107: 139-146.   DOI
8 Yang, X. Y., Z. C. Long, A. W. Gichira, Y. H. Guo, Q. F. Wang and J. M. Chen. 2016. Development of microsatellite markers in the tetraploid fern Ceratopteris thalictroides (Parkeriaceae) using RAD tag sequencing. Genetics and Molecular Research 15: gmr7550.
9 Yu, Y. F. 1999. A milestone of wild plant conservation in China. Plants 5: 3-11.
10 Cho, W.-B., I.-S. Choi and B.-H. Choi. 2015. Development of microsatellite markers for the endangered Pedicularis ishidoyana (Orobanchaceae) using next-generation sequencing. Applications in Plant Sciences 3: 1500083.
11 Dong, Y.-H., J.-M. Chen, G. W. Robert and Q.-F. Wang. 2008. Genetic variation in the endangered aquatic fern Ceratopteris thalictroides (Parkeriaceae) in China: implications from RAPD and ISSR data. Botanical Journal of the Linnean Society 157: 657-671.   DOI
12 Dufresne, F., M. Stift, R. Vergilino and B. K. Mable. 2014. Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools. Molecular Ecology 23: 40-69.   DOI
13 Hickok, L. G. 1977. Cytological relationships between three diploid species of the ferns genus Ceratopteris. Canadian Journal of Botany 55: 1660-1667.   DOI