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http://dx.doi.org/10.11110/kjpt.2014.44.1.39

Phylogenetic position of Neofinetia and Sedirea (Orchidaceae) and their species identification using the chloroplast matK and the nuclear ITS sequences  

Kim, Young-Kee (Division of Life Sciences, School of Life Sciences, Korea University)
Jo, Sang Jin (Division of Life Sciences, School of Life Sciences, Korea University)
Kim, Ki-Joong (Division of Life Sciences, School of Life Sciences, Korea University)
Publication Information
Korean Journal of Plant Taxonomy / v.44, no.1, 2014 , pp. 39-50 More about this Journal
Abstract
Phylogenetic positions of Sedirea and Neofinetia were addressed using the chloroplast matK and the nuclear ITS sequences. We also evaluate the usefulness of the makers for the identification of species and localities. Sedirea and Neofinetia form an independent monophyletic genus, respectively, in both matK and nuclear ITS trees. The sister genus of the Neofinetia was Vanda in both trees. In addition, our trees support the separate recognition of the Neofinetia from Vanda rather than the inclusion of Neofinetia into Vanda. The sister group of the Sedirea was (Dimorphorchis(Pteroceras(Saccolabiun+Phalaeonopsis))) clade. The Dimorphorchis was one of the most probable sister genus to the Sedirea. The sister group relationship between Sedirea and Aerides was suggested by their similar morphology, but not supported in molecular trees. The identification of species and localities of Neofinetia was possible using our two molecular markers. However, several pseudo-gene sequences are discovered from the public data base. In addition, the horizontal gene transfer of chloroplast genomes is frequent events in orchid hybrids. Therefore, we need a careful evaluation for the data prior to systematic use. Generation of sequence data from multiple accessions of a species may helpful to reduce these types of error.
Keywords
Sedirea japonica; Neofinetia falcata; pseudo-gene; horizontal gene transfer; chloroplast matK tree; nuclear ITS tree;
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