Analysis of Genetic Diversity and Population Structure for Core Set of Waxy and Normal Maize Inbred Lines using SSR Markers |
Sa, Kyu Jin
(Department of Applied Plant Sciences, College of Agriculture and Life Science, Kangwon National University)
Kim, Jin-Ah (Department of Applied Plant Sciences, College of Agriculture and Life Science, Kangwon National University) Park, Ki Jin (Maize Experiment Station, Kangwon Agricultural Research and Extension Services) Park, Jong Yeol (Maize Experiment Station, Kangwon Agricultural Research and Extension Services) Goh, Byeong Dae (Maize Experiment Station, Kangwon Agricultural Research and Extension Services) Lee, Ju Kyong (Department of Applied Plant Sciences, College of Agriculture and Life Science, Kangwon National University) |
1 | Akagi H, Yokozaki Y, Inagaki A, Fujimura T. 1997. Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related cultivars with these microsatellite loci. Theor. Appl. Genet. 94:61-67. DOI ScienceOn |
2 | Blair MW, Diaz LM, Buendia HF, Duque MC. 2009. Genetic diversity, seed size association and population structure of a core collection of common beans(phaseolus vulgaris L.). Theor. Appl. Genet. 119:955-972. DOI ScienceOn |
3 | Bostein D, White RL, Skolnick M, Davis RW. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Genet. 32:314-331. |
4 | D'hoop BB, Paulo MJ, Kowitwanich K, Sengers M, Visser RGF, van Eck HJ, van Eeuwijk FA. 2010. Population structure and linkage disequilibrium unraveled in tetraploid potato. Theor. Appl. Genet. 121:1151-1170. DOI ScienceOn |
5 | Dellaporta SL, Wood J, Hicks JB. 1983. A simple and rapid method for plant DNA preparation. Version II. Plant Mol. Biol. Rep. 1:19-21. DOI ScienceOn |
6 | Dice LR. 1945. Measures of the amount of ecologic association between species. Ecology 26: 297-302. DOI ScienceOn |
7 | Enoki H, Sato H, Koinuma K. 2002. SSR analysis of genetic diversity among maize inbred lines adapted to cold regions of Japan. Theor. Appl. Genet. 104: 1270-1277. DOI ScienceOn |
8 | Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14:2611-2620. DOI ScienceOn |
9 | Hallauer AR, Russell WA, Lamkey KR. 1988. Corn breeding. pp 463-564. In G.F. Sprague and JW Dudley (ed). Corn and Corn Improvement. 3rd ed. Agron., Monogr. 18. Madison, WI, USA. |
10 | van Inghelandt D, Melchinger AE, Lebreton C, Stich B. 2010. Population and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers. Theor. Appl. Genet. 120:1289-1299. DOI ScienceOn |
11 | Jin L, Lu Y, Xiao P, Sun M, Corke H, Bao J. 2010. Genetic diversity and population structure of a rice germplasm for association mapping. Theor. Appl. Genet. 121:475-487. DOI ScienceOn |
12 | Labate JA, Lamkey KR, Mitchell SH, Kresovich S, Sullivan H, Smith JSC. 2003. Molecular and historical aspects of Corn Belt dent diversity. Crop Sci. 43:80-91. DOI |
13 | LI J, Schulz B, Stich B. 2010. Population structure and genetic diversity in elite sugar beet germplasm investigated with SSR markers. Euphytica 175:35-42. DOI ScienceOn |
14 | Liu K, Muse SV. 2005. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128-2129. DOI ScienceOn |
15 | Liu KJ, Goodman M, Muse S, Smith JS, Buckler ES, Doebley J. 2003. Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics 165:2117-2128. |
16 | Lu H, Bernardo R. 2001. Molecular diversity among current and historical maize inbreds. Theor. Appl. Genet. 103:613 -617. DOI ScienceOn |
17 | Matsuoka Y, Mitchell SE, Kresovich S, Goodman M, Doebley J. 2002. Microsatellites in Zea-variability, patterns of mutations, and use for evolutionary studies. Theor. Appl. Genet. 104:436-450. DOI ScienceOn |
18 | Nelson OE, Rines HW. 1962. The enzymatic deficiency in the waxy mutant of maize. Biochem. Biophys. Res. Commun. 9:297-300. DOI ScienceOn |
19 | Pejic I, Ajmone-Marsan P, Morgante M, Kozumplick V, Castiglioni P, Taramino G, Motto M. 1998. Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSR, and AFLPs. Theor. Appl. Genet. 97:1248-1255. DOI ScienceOn |
20 | Pritchard JK, Wen W. 2003. Documentation for STRUCTURE software: Version 2. |
21 | Rohlf FJ. 1998. NTSYS- pc: Numerical taxonomy and multivariate analysis system. Version: 2.02. Exeter Software, Setauket, New York. |
22 | Senior ML, Murphy JP, Goodman MM, Stuber CW. 1998. Utility of SSRs for determining genetic similarities an relationships in maize using an agarose gel system. Crop Sci. 38:1088-1098. DOI ScienceOn |
23 | Smith JSC, Chin ECL, Shu H, Smith OS, Wall SJ, Senior ML, Mitchell SE, Kresovich S, Ziegler J. 1997. An evaluation of the utility of SSR loci as molecular marker in maize (Zea mays L.): comparison with RFLPs and pedigree. Theor. Appl. Genet. 95:163-173. DOI ScienceOn |
24 | Sprague GF, Brimhall B, Hixon RM. 1943. Some effects of the waxy gene in corn on properties of the endosperm starch. J. Am. Soc. Agron. 35:817-822. DOI |
25 | Wang R, Yu Y, Zhao J, Shi Y, Song Y, Wang T, Li Y. 2008. Population structure and linkage disequilibrium of a mini core set of maize inbred lines in China. Theor. Appl. Genet. 117:1141-1153. DOI ScienceOn |
26 | Stich B, Melchinger AE, Frisch M, Maurer HP, Hecknberger M, Reif JC. 2005. Linkage disequilibrium in European elite maize germplasm investigated with SSRs. Theor. Appl. Genet. 111:723-730. DOI ScienceOn |
27 | Tian ML, Tan GX, Liu YJ, Rong TZ, Huang YB. 2009. Origin and evolution of Chinese waxy maize: evidence from the Globulin-1 gene. Genet. Resour. Crop Evol. 56:247-255. DOI ScienceOn |
28 | Wang ML, Zhu C, Barkley NA, Chen Z, Erpelding JE, Murray SC, Tuinstra MR, Tesso T, Pederson GA, Yu J. 2009. Genetic diversity and population structure analysis of accessions in the US historic sweet sorghum collection. Theor. Appl. Genet. 120:13-23. DOI ScienceOn |
29 | Xie CX, Warburton M, Li MS, Li XH, Xiao MJ, Hao ZF, Zhao Q, Zhang SH. 2008. An analysis of population structure and linkage disequilibrium using multilocus data in 187 maize inbred lines. Mol. Breed. 21:407-418. DOI ScienceOn |